Wall clock time and date at job start Tue Mar 31 2020 02:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35317 * 128.03771 * 2 1 4 4 O 1.34019 * 106.66601 * 180.22491 * 3 2 1 5 5 N 1.20900 * 111.84840 * 359.76043 * 4 3 2 6 6 C 1.30986 * 111.44220 * 359.97438 * 5 4 3 7 7 C 1.48326 * 126.94112 * 179.97438 * 6 5 4 8 8 O 1.21497 * 120.00007 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00047 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99898 * 179.97438 * 9 7 6 11 11 H 1.08999 * 110.64096 * 31.86783 * 10 9 7 12 12 C 1.54337 * 110.85233 * 268.69760 * 10 9 7 13 13 N 1.47023 * 107.26492 * 219.67747 * 12 10 9 14 14 C 1.36935 * 125.65068 * 178.84914 * 13 12 10 15 15 H 1.08000 * 119.99645 * 347.82143 * 14 13 12 16 16 C 1.38811 * 120.00555 * 167.81573 * 14 13 12 17 17 N 1.31622 * 119.99755 * 325.96110 * 16 14 13 18 18 Si 1.86792 * 120.00250 * 145.96005 * 16 14 13 19 19 H 1.48504 * 109.47130 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47082 * 240.00419 * 18 16 14 21 21 H 1.48502 * 109.47416 * 120.00461 * 18 16 14 22 22 C 1.47426 * 108.70179 * 358.58014 * 13 12 10 23 23 C 1.54910 * 104.83255 * 24.36139 * 22 13 12 24 24 H 1.08999 * 111.00313 * 81.06476 * 23 22 13 25 25 O 1.42902 * 111.00355 * 204.87386 * 23 22 13 26 26 H 1.09001 * 109.47105 * 270.15095 * 1 2 3 27 27 H 1.08998 * 109.47388 * 30.15466 * 1 2 3 28 28 H 1.09003 * 109.46724 * 150.15176 * 1 2 3 29 29 H 1.07999 * 126.66624 * 359.95990 * 3 2 1 30 30 H 0.97001 * 120.00026 * 0.02562 * 9 7 6 31 31 H 1.08989 * 109.99225 * 100.20134 * 12 10 9 32 32 H 1.08999 * 109.77459 * 339.02811 * 12 10 9 33 33 H 0.97003 * 119.99992 * 354.25370 * 17 16 14 34 34 H 1.09004 * 110.36418 * 143.19977 * 22 13 12 35 35 H 1.08997 * 110.37233 * 265.40799 * 22 13 12 36 36 H 0.96694 * 113.99918 * 298.54628 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0050 5 7 3.5989 -0.6316 -0.0033 6 6 2.3837 -1.1205 0.0036 7 6 1.9993 -2.5531 0.0071 8 8 0.8256 -2.8671 0.0131 9 7 2.9519 -3.5065 0.0037 10 6 2.5722 -4.9214 0.0077 11 1 1.6332 -5.0688 -0.5258 12 6 2.4688 -5.4583 1.4510 13 7 3.0329 -6.8161 1.4529 14 6 3.1486 -7.6307 2.5474 15 1 2.9970 -7.2286 3.5383 16 6 3.4605 -8.9734 2.3836 17 7 3.0174 -9.6283 1.3314 18 14 4.5092 -9.8507 3.6564 19 1 4.8770 -8.8992 4.7356 20 1 5.7421 -10.3679 3.0104 21 1 3.7415 -10.9825 4.2352 22 6 3.4473 -7.1577 0.0799 23 6 3.6971 -5.7934 -0.6100 24 1 4.6811 -5.4006 -0.3540 25 8 3.5440 -5.9002 -2.0268 26 1 -0.3633 0.0027 1.0277 27 1 -0.3634 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5115 29 1 2.0559 2.1075 -0.0006 30 1 3.8890 -3.2558 -0.0008 31 1 1.4250 -5.4902 1.7629 32 1 3.0398 -4.8188 2.1241 33 1 2.4054 -9.1975 0.7143 34 1 4.3635 -7.7481 0.0961 35 1 2.6542 -7.7035 -0.4311 36 1 4.1650 -6.5125 -2.4444 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077956540.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:22 Heat of formation + Delta-G solvation = 6.298672 kcal Electronic energy + Delta-G solvation = -21993.231784 eV Core-core repulsion = 18481.890178 eV Total energy + Delta-G solvation = -3511.341606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.30996 -39.84172 -38.08990 -35.34552 -34.89676 -34.38381 -32.66123 -31.69856 -28.63622 -28.26321 -27.42495 -24.97304 -23.89808 -21.88926 -21.01545 -20.76290 -20.17577 -18.51964 -17.99684 -17.60096 -17.14502 -16.57480 -15.89039 -14.91857 -14.79146 -14.39258 -14.13952 -13.85292 -13.58168 -13.50976 -13.43759 -13.16971 -12.69341 -12.58558 -12.25012 -11.74635 -11.65319 -11.58049 -10.78983 -10.56957 -10.48771 -10.29186 -10.19715 -10.08676 -9.88019 -9.69345 -9.58051 -9.00889 -8.40531 -7.08184 -6.22738 -3.17635 0.95421 1.45275 2.78981 2.98443 3.11169 3.50067 3.51452 3.66683 3.78270 4.25917 4.38140 4.57266 4.62184 4.84089 4.97904 5.16420 5.21020 5.37148 5.40698 5.43055 5.48936 5.51330 5.58883 5.85023 5.88657 6.03513 6.25207 6.51401 6.64920 6.74118 6.82583 7.39369 7.67092 7.80067 7.86549 8.09425 8.40108 8.90593 9.72518 10.23953 11.11420 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.003861 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.050447 B = 7249.352239 C = 7432.921811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.149 4.149 3 C -0.071 4.071 4 O 0.123 5.877 5 N -0.330 5.330 6 C -0.025 4.025 7 C 0.598 3.402 8 O -0.518 6.518 9 N -0.698 5.698 10 C 0.142 3.858 11 H 0.107 0.893 12 C 0.130 3.870 13 N -0.597 5.597 14 C -0.346 4.346 15 H 0.071 0.929 16 C -0.021 4.021 17 N -0.907 5.907 18 Si 1.063 2.937 19 H -0.291 1.291 20 H -0.289 1.289 21 H -0.294 1.294 22 C 0.120 3.880 23 C 0.078 3.922 24 H 0.068 0.932 25 O -0.562 6.562 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.223 0.777 30 H 0.405 0.595 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.269 0.731 34 H 0.060 0.940 35 H 0.038 0.962 36 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 20.397 -5.149 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.154 4.154 3 C -0.151 4.151 4 O 0.048 5.952 5 N -0.031 5.031 6 C -0.184 4.184 7 C 0.382 3.618 8 O -0.393 6.393 9 N -0.348 5.348 10 C 0.037 3.963 11 H 0.125 0.875 12 C 0.003 3.997 13 N -0.325 5.325 14 C -0.473 4.473 15 H 0.089 0.911 16 C -0.223 4.223 17 N -0.547 5.547 18 Si 0.892 3.108 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.221 1.221 22 C -0.007 4.007 23 C 0.017 3.983 24 H 0.086 0.914 25 O -0.367 6.367 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.240 0.760 30 H 0.240 0.760 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.911 18.467 -4.581 19.049 hybrid contribution -0.674 1.410 -0.365 1.604 sum 0.237 19.877 -4.946 20.485 Atomic orbital electron populations 1.20237 0.86496 1.03918 1.03345 1.21398 0.99211 0.90063 1.04743 1.25777 0.82401 1.01280 1.05675 1.84769 1.29491 1.15223 1.65749 1.74172 1.21661 0.91631 1.15624 1.23530 0.89515 0.97238 1.08120 1.16839 0.85745 0.82224 0.77031 1.90790 1.17347 1.81493 1.49620 1.45807 1.09583 1.06086 1.73336 1.22092 0.99091 0.77537 0.97558 0.87501 1.21662 0.97619 0.88156 0.92265 1.44420 1.70787 1.12673 1.04669 1.19756 1.50273 0.92032 0.85238 0.91149 1.25719 1.01481 0.92613 1.02487 1.70745 1.30521 1.37031 1.16366 0.83591 0.76898 0.75222 0.75045 1.21737 1.21592 1.22136 1.22140 0.99456 0.92705 0.86360 1.23353 0.96891 0.97450 0.80573 0.91398 1.86446 1.62547 1.68049 1.19690 0.90426 0.91030 0.89319 0.76029 0.76007 0.94548 0.94827 0.91980 0.92208 0.94428 0.77312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.15 -1.61 6.34 -104.11 -0.66 -2.28 16 3 C -0.07 -0.54 12.24 29.69 0.36 -0.18 16 4 O 0.12 1.26 11.18 17.24 0.19 1.46 16 5 N -0.33 -4.30 11.84 33.29 0.39 -3.91 16 6 C -0.02 -0.34 7.19 -82.53 -0.59 -0.94 16 7 C 0.60 10.00 7.85 -12.11 -0.10 9.90 16 8 O -0.52 -9.87 14.99 5.37 0.08 -9.79 16 9 N -0.70 -11.48 5.11 -52.81 -0.27 -11.75 16 10 C 0.14 2.70 3.05 -66.09 -0.20 2.50 16 11 H 0.11 2.21 7.55 -51.93 -0.39 1.82 16 12 C 0.13 2.86 7.01 -3.06 -0.02 2.84 16 13 N -0.60 -15.23 3.33 -170.07 -0.57 -15.79 16 14 C -0.35 -9.81 9.97 -15.06 -0.15 -9.96 16 15 H 0.07 2.01 8.02 -52.49 -0.42 1.59 16 16 C -0.02 -0.58 4.95 -17.43 -0.09 -0.67 16 17 N -0.91 -27.09 12.87 55.49 0.71 -26.38 16 18 Si 1.06 25.18 30.03 -169.99 -5.10 20.07 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.12 2.74 5.07 -2.53 -0.01 2.72 16 23 C 0.08 1.42 4.06 -24.58 -0.10 1.32 16 24 H 0.07 1.15 8.01 -51.93 -0.42 0.73 16 25 O -0.56 -9.33 13.47 -35.23 -0.47 -9.80 16 26 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 1.03 6.89 -51.93 -0.36 0.67 16 29 H 0.22 0.56 8.06 -52.49 -0.42 0.14 16 30 H 0.40 5.97 8.32 -40.82 -0.34 5.63 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.73 8.03 -51.93 -0.42 0.32 16 33 H 0.27 8.13 6.45 -40.82 -0.26 7.86 16 34 H 0.06 1.44 7.82 -51.93 -0.41 1.04 16 35 H 0.04 0.93 7.02 -51.93 -0.36 0.56 16 36 H 0.38 4.68 9.11 45.56 0.42 5.09 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -34.26 311.57 -4.98 -39.25 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.45 Total: 7.09 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.20 Total: 4.86 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.27 Total: -57.83 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.20 Total: -18.14 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.10 Total: 20.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.26 -4.98 -39.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077956540.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds