Wall clock time and date at job start Tue Mar 31 2020 02:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41264 * 126.70410 * 2 1 4 4 C 1.36824 * 103.84589 * 180.13036 * 3 2 1 5 5 C 1.47514 * 126.93986 * 179.91210 * 4 3 2 6 6 O 1.21576 * 120.00427 * 359.70162 * 5 4 3 7 7 N 1.34778 * 119.99378 * 179.70551 * 5 4 3 8 8 C 1.46503 * 119.99428 * 179.97438 * 7 5 4 9 9 H 1.08997 * 110.78403 * 36.78395 * 8 7 5 10 10 C 1.54325 * 110.72047 * 273.54319 * 8 7 5 11 11 N 1.47025 * 107.27124 * 263.83426 * 10 8 7 12 12 C 1.36938 * 125.64661 * 181.02202 * 11 10 8 13 13 H 1.07999 * 120.00291 * 10.38698 * 12 11 10 14 14 C 1.38815 * 119.99697 * 190.10830 * 12 11 10 15 15 N 1.31617 * 120.00027 * 9.60119 * 14 12 11 16 16 Si 1.86797 * 119.99629 * 189.60109 * 14 12 11 17 17 H 1.48503 * 109.47317 * 94.11739 * 16 14 12 18 18 H 1.48504 * 109.47004 * 214.11628 * 16 14 12 19 19 H 1.48504 * 109.47440 * 334.11773 * 16 14 12 20 20 C 1.47422 * 108.70473 * 1.28243 * 11 10 8 21 21 C 1.55135 * 104.72243 * 335.55732 * 20 11 10 22 22 H 1.08995 * 111.22254 * 279.17679 * 21 20 11 23 23 O 1.42900 * 110.90633 * 155.27027 * 21 20 11 24 24 O 1.34645 * 106.11295 * 359.63902 * 4 3 2 25 25 N 1.20881 * 111.46416 * 0.24736 * 24 4 3 26 26 H 1.08996 * 109.47073 * 270.30138 * 1 2 3 27 27 H 1.08997 * 109.47300 * 30.30615 * 1 2 3 28 28 H 1.08999 * 109.46692 * 150.30726 * 1 2 3 29 29 H 1.08002 * 128.07607 * 0.02562 * 3 2 1 30 30 H 0.96994 * 120.00713 * 359.97438 * 7 5 4 31 31 H 1.09002 * 109.88429 * 144.41752 * 10 8 7 32 32 H 1.09003 * 110.01101 * 23.31817 * 10 8 7 33 33 H 0.97001 * 119.99777 * 180.02562 * 15 14 12 34 34 H 1.09005 * 110.36292 * 94.48209 * 20 11 10 35 35 H 1.08994 * 110.37217 * 216.80981 * 20 11 10 36 36 H 0.96703 * 113.99575 * 67.97852 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0030 5 6 4.8870 1.3431 -0.0061 6 8 4.8828 2.5589 -0.0117 7 7 6.0565 0.6733 -0.0029 8 6 7.3227 1.4102 -0.0066 9 1 7.2464 2.3131 0.5992 10 6 7.7496 1.7550 -1.4490 11 7 8.6947 0.7164 -1.8845 12 6 9.3228 0.6680 -3.1004 13 1 9.2734 1.5156 -3.7678 14 6 10.0280 -0.4683 -3.4726 15 7 9.9391 -1.5643 -2.7493 16 14 11.1029 -0.4418 -5.0001 17 1 12.4988 -0.1096 -4.6174 18 1 11.0721 -1.7766 -5.6502 19 1 10.5923 0.5819 -5.9470 20 6 8.8495 -0.2678 -0.7978 21 6 8.4832 0.5100 0.4935 22 1 9.3220 1.1121 0.8428 23 8 8.0354 -0.3819 1.5163 24 8 3.4540 -0.7360 0.0036 25 7 2.2848 -1.0432 0.0051 26 1 -0.3633 0.0054 1.0276 27 1 -0.3634 0.8872 -0.5186 28 1 -0.3633 -0.8927 -0.5091 29 1 2.0678 2.1747 0.0004 30 1 6.0599 -0.2967 0.0018 31 1 8.2358 2.7304 -1.4686 32 1 6.8786 1.7617 -2.1043 33 1 10.4322 -2.3582 -3.0092 34 1 8.1679 -1.1056 -0.9450 35 1 9.8798 -0.6199 -0.7487 36 1 8.7263 -0.9647 1.8601 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083334847.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:11 Heat of formation + Delta-G solvation = -15.717182 kcal Electronic energy + Delta-G solvation = -22116.994356 eV Core-core repulsion = 18604.698071 eV Total energy + Delta-G solvation = -3512.296285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -46.06297 -41.16620 -39.36806 -36.64604 -36.03244 -35.37947 -33.77389 -32.94438 -30.26940 -29.60307 -28.90625 -26.55592 -25.10341 -23.92623 -22.35251 -21.66877 -21.18308 -19.54766 -18.88236 -18.85844 -18.31570 -17.33754 -17.20455 -16.70574 -16.11918 -15.85177 -15.62761 -14.94282 -14.72512 -14.55915 -14.21661 -14.14219 -14.09466 -13.90353 -13.67110 -13.18352 -12.97827 -12.79202 -12.67070 -12.41930 -12.05321 -11.92641 -11.81484 -11.46067 -11.13444 -10.87939 -10.84449 -10.70743 -10.23357 -8.91351 -7.90867 -5.26512 -0.32328 0.99740 1.47390 1.47974 1.49110 1.57345 1.84073 2.10437 2.47262 3.05636 3.08584 3.29189 3.42326 3.63064 3.76866 3.86768 3.96961 3.98438 4.30216 4.34907 4.52038 4.58995 4.70398 4.75114 4.79812 4.81793 4.89513 5.19807 5.31107 5.38197 5.47547 5.66027 6.14461 6.23057 6.77949 6.89892 7.00507 7.05406 7.70153 8.34586 9.20101 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.004292 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.810040 B = 6522.144448 C = 6885.476573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.016 3.984 3 C -0.145 4.145 4 C -0.091 4.091 5 C 0.606 3.394 6 O -0.543 6.543 7 N -0.681 5.681 8 C 0.151 3.849 9 H 0.115 0.885 10 C 0.124 3.876 11 N -0.618 5.618 12 C -0.248 4.248 13 H 0.078 0.922 14 C -0.056 4.056 15 N -0.943 5.943 16 Si 0.977 3.023 17 H -0.284 1.284 18 H -0.295 1.295 19 H -0.271 1.271 20 C 0.155 3.845 21 C 0.088 3.912 22 H 0.096 0.904 23 O -0.562 6.562 24 O 0.098 5.902 25 N -0.371 5.371 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.206 0.794 30 H 0.413 0.587 31 H 0.050 0.950 32 H 0.017 0.983 33 H 0.250 0.750 34 H 0.008 0.992 35 H 0.047 0.953 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 4.077 9.273 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.142 4.142 3 C -0.167 4.167 4 C -0.157 4.157 5 C 0.390 3.610 6 O -0.422 6.422 7 N -0.330 5.330 8 C 0.046 3.954 9 H 0.133 0.867 10 C -0.002 4.002 11 N -0.345 5.345 12 C -0.376 4.376 13 H 0.096 0.904 14 C -0.250 4.250 15 N -0.591 5.591 16 Si 0.805 3.195 17 H -0.210 1.210 18 H -0.222 1.222 19 H -0.196 1.196 20 C 0.029 3.971 21 C 0.027 3.973 22 H 0.113 0.887 23 O -0.369 6.369 24 O 0.029 5.971 25 N -0.077 5.077 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.100 0.900 29 H 0.223 0.777 30 H 0.250 0.750 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.065 0.935 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -14.086 3.798 9.063 17.175 hybrid contribution 1.309 -0.354 -1.005 1.688 sum -12.776 3.445 8.058 15.493 Atomic orbital electron populations 1.20429 0.82184 1.05435 1.05154 1.24352 1.01119 0.87402 1.01326 1.23235 0.88958 1.02891 1.01613 1.24186 0.97450 0.84224 1.09850 1.16646 0.81510 0.86009 0.76831 1.90821 1.86544 1.12556 1.52244 1.45624 1.04545 1.11354 1.71473 1.22027 0.81858 0.95656 0.95906 0.86730 1.21867 0.92278 0.93063 0.92991 1.44569 1.49858 1.26404 1.13706 1.19382 1.25191 0.99293 0.93781 0.90377 1.25595 1.02640 0.94902 1.01870 1.70108 1.45595 1.01722 1.41704 0.85099 0.78806 0.76611 0.79000 1.21025 1.22202 1.19627 1.21923 0.99346 0.90493 0.85341 1.23357 0.94911 0.91229 0.87772 0.88656 1.86333 1.41917 1.54054 1.54635 1.84996 1.21865 1.22323 1.67871 1.73744 0.89428 1.25631 1.18871 0.88129 0.87333 0.89987 0.77672 0.75034 0.93170 0.96509 0.94119 0.97431 0.93455 0.75064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.47 71.24 0.75 -0.16 16 2 C 0.02 0.35 7.31 43.56 0.32 0.67 16 3 C -0.15 -3.34 10.91 22.68 0.25 -3.09 16 4 C -0.09 -2.65 7.29 24.39 0.18 -2.47 16 5 C 0.61 19.87 7.81 86.69 0.68 20.55 16 6 O -0.54 -19.63 16.64 -3.95 -0.07 -19.70 16 7 N -0.68 -22.84 4.78 -440.10 -2.10 -24.95 16 8 C 0.15 5.19 3.13 46.18 0.14 5.34 16 9 H 0.11 3.61 7.70 -2.39 -0.02 3.59 16 10 C 0.12 5.15 6.98 86.73 0.61 5.75 16 11 N -0.62 -30.65 3.39 -691.52 -2.35 -33.00 16 12 C -0.25 -13.62 10.24 84.03 0.86 -12.76 16 13 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 14 C -0.06 -3.10 5.40 84.86 0.46 -2.64 16 15 N -0.94 -54.48 10.68 21.65 0.23 -54.25 16 16 Si 0.98 44.75 29.56 68.60 2.03 46.78 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.15 7.00 5.14 86.93 0.45 7.44 16 21 C 0.09 2.94 4.23 32.07 0.14 3.08 16 22 H 0.10 2.86 8.14 -2.39 -0.02 2.85 16 23 O -0.56 -16.12 12.63 -148.98 -1.88 -18.00 16 24 O 0.10 2.98 11.04 65.80 0.73 3.70 16 25 N -0.37 -10.50 12.04 -48.86 -0.59 -11.09 16 26 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.21 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.41 13.97 8.02 -92.71 -0.74 13.23 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.02 0.75 8.05 -2.39 -0.02 0.74 16 33 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 34 H 0.01 0.39 8.08 -2.38 -0.02 0.37 16 35 H 0.05 2.38 6.92 -2.39 -0.02 2.36 16 36 H 0.40 8.32 9.12 -74.06 -0.68 7.65 16 Total: -1.00 -69.11 313.83 0.53 -68.58 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.29 Total: 20.20 kcal Atomic # 6 Polarization: 16.90 SS G_CDS: 4.82 Total: 21.72 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -4.81 Total: -123.29 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -1.22 Total: -33.99 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -69.11 0.53 -68.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083334847.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.860 kcal (2) G-P(sol) polarization free energy of solvation -69.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds