Wall clock time and date at job start Tue Mar 31 2020 02:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42898 * 114.00151 * 2 1 4 4 C 1.52994 * 109.47038 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47128 * 65.00513 * 4 3 2 6 6 C 1.34793 * 119.79067 * 269.72480 * 5 4 3 7 7 C 1.38744 * 118.94153 * 179.74066 * 6 5 4 8 8 C 1.47392 * 120.69242 * 180.26290 * 7 6 5 9 9 O 1.21630 * 120.00482 * 100.79829 * 8 7 6 10 10 N 1.34783 * 119.99679 * 280.79434 * 8 7 6 11 11 C 1.46503 * 120.00152 * 5.60354 * 10 8 7 12 12 C 1.36943 * 119.99831 * 185.60371 * 10 8 7 13 13 H 1.08002 * 120.00239 * 22.13977 * 12 10 8 14 14 C 1.38994 * 119.99873 * 202.15002 * 12 10 8 15 15 N 1.31398 * 120.00526 * 18.78007 * 14 12 10 16 16 Si 1.86806 * 119.99982 * 198.77657 * 14 12 10 17 17 H 1.48500 * 109.46802 * 94.98671 * 16 14 12 18 18 H 1.48493 * 109.47437 * 214.98646 * 16 14 12 19 19 H 1.48500 * 109.47082 * 334.98912 * 16 14 12 20 20 C 1.41281 * 118.61198 * 0.50557 * 7 6 5 21 21 N 1.31438 * 119.50194 * 359.75580 * 20 7 6 22 22 C 1.33657 * 121.03951 * 0.02562 * 21 20 7 23 23 O 1.21874 * 119.24849 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.47290 * 59.99650 * 1 2 3 25 25 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46895 * 300.00029 * 1 2 3 27 27 H 1.09002 * 109.47073 * 300.00118 * 3 2 1 28 28 H 1.08999 * 109.46903 * 60.00481 * 3 2 1 29 29 H 1.09006 * 109.47355 * 185.00189 * 4 3 2 30 30 H 1.08999 * 109.47799 * 305.00294 * 4 3 2 31 31 H 1.07997 * 120.53368 * 359.97438 * 6 5 4 32 32 H 1.08999 * 109.46998 * 91.40339 * 11 10 8 33 33 H 1.09004 * 109.46701 * 211.40249 * 11 10 8 34 34 H 1.09000 * 109.46926 * 331.39855 * 11 10 8 35 35 H 0.96993 * 120.00276 * 180.02562 * 15 14 12 36 36 H 1.07995 * 120.24499 * 179.78117 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0987 -0.7757 -1.3294 7 6 4.5117 -1.3448 -2.5255 8 6 4.6536 -2.8062 -2.6539 9 8 3.7837 -3.4560 -3.2021 10 7 5.7475 -3.4226 -2.1638 11 6 6.7359 -2.6605 -1.3967 12 6 5.9350 -4.7613 -2.3830 13 1 5.4400 -5.2476 -3.2107 14 6 6.7622 -5.4944 -1.5402 15 7 7.0666 -5.0283 -0.3500 16 14 7.4411 -7.1424 -2.0996 17 1 8.7949 -6.9492 -2.6784 18 1 7.5263 -8.0629 -0.9375 19 1 6.5417 -7.7250 -3.1276 20 6 4.7983 -0.4938 -3.6162 21 7 4.6637 0.8061 -3.4758 22 6 4.2603 1.3360 -2.3169 23 8 4.1470 2.5458 -2.2227 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8464 -0.8900 28 1 1.6887 1.8463 0.8900 29 1 3.9786 2.1764 0.0890 30 1 3.8516 0.5681 0.8409 31 1 3.8757 -1.3969 -0.4746 32 1 6.4863 -2.7055 -0.3366 33 1 7.7264 -3.0871 -1.5552 34 1 6.7304 -1.6219 -1.7276 35 1 7.6441 -5.5397 0.2379 36 1 5.1251 -0.9083 -4.5584 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197706204.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:26 Heat of formation + Delta-G solvation = -72.454245 kcal Electronic energy + Delta-G solvation = -22361.101427 eV Core-core repulsion = 18846.344839 eV Total energy + Delta-G solvation = -3514.756588 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.96843 -40.33653 -39.03323 -38.10224 -36.82839 -36.57798 -33.76098 -32.40334 -31.17970 -28.19790 -27.54926 -26.71864 -26.18298 -25.26744 -23.76821 -21.40230 -19.64231 -18.99037 -18.67374 -18.24453 -17.56899 -17.52916 -17.37782 -16.71355 -16.28046 -16.01366 -15.70221 -15.54410 -15.38890 -14.76209 -14.33580 -13.89374 -13.77512 -13.44711 -13.27179 -13.25355 -13.10657 -12.96436 -12.61276 -12.39018 -12.29373 -12.21116 -12.08968 -11.92527 -11.02638 -11.01449 -10.74957 -10.44208 -9.70210 -9.54360 -8.35925 -5.95524 -0.50488 0.33438 1.18435 1.42326 1.48720 1.59747 1.94980 2.29680 2.50424 2.72462 2.97466 3.05499 3.18022 3.41790 3.50919 3.78557 3.89913 3.98782 4.16517 4.36700 4.39296 4.44964 4.50095 4.57829 4.62801 4.76624 4.82018 4.98963 5.03594 5.19420 5.32436 5.50179 6.04728 6.09244 6.46369 6.53857 6.90362 7.15690 7.42371 7.98953 8.67505 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.004869 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.044663 B = 5748.777447 C = 6209.713409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.046 3.954 4 C 0.085 3.915 5 N -0.491 5.491 6 C 0.250 3.750 7 C -0.278 4.278 8 C 0.499 3.501 9 O -0.622 6.622 10 N -0.439 5.439 11 C 0.121 3.879 12 C -0.345 4.345 13 H 0.078 0.922 14 C 0.007 3.993 15 N -0.885 5.885 16 Si 0.985 3.015 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.274 1.274 20 C 0.286 3.714 21 N -0.577 5.577 22 C 0.621 3.379 23 O -0.573 6.573 24 H 0.038 0.962 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.107 0.893 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.196 0.804 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.275 0.725 36 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 9.164 6.113 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.334 6.334 3 C -0.031 4.031 4 C -0.036 4.036 5 N -0.202 5.202 6 C 0.108 3.892 7 C -0.290 4.290 8 C 0.287 3.713 9 O -0.509 6.509 10 N -0.155 5.155 11 C -0.022 4.022 12 C -0.473 4.473 13 H 0.096 0.904 14 C -0.197 4.197 15 N -0.523 5.523 16 Si 0.809 3.191 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.198 1.198 20 C 0.107 3.893 21 N -0.311 5.311 22 C 0.324 3.676 23 O -0.452 6.452 24 H 0.057 0.943 25 H 0.109 0.891 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.124 0.876 29 H 0.146 0.854 30 H 0.154 0.846 31 H 0.213 0.787 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.148 10.292 5.643 12.817 hybrid contribution -0.084 -1.280 0.306 1.319 sum -5.232 9.013 5.949 12.000 Atomic orbital electron populations 1.22884 0.79141 1.03694 1.00919 1.87847 1.21852 1.28077 1.95666 1.22940 0.92194 0.85377 1.02594 1.22595 0.94444 1.02892 0.83624 1.46226 1.51666 1.06552 1.15709 1.23033 0.84267 0.83612 0.98242 1.20402 1.16852 0.95487 0.96209 1.17639 0.82221 0.85974 0.85467 1.90625 1.42443 1.67223 1.50609 1.43749 1.17632 1.08362 1.45799 1.21417 0.92295 0.92848 0.95643 1.19627 1.29818 0.85071 1.12755 0.90399 1.26012 0.97272 1.02538 0.93886 1.70045 1.34982 1.40960 1.06293 0.85037 0.78736 0.77354 0.77985 1.19190 1.20239 1.19823 1.23939 0.80496 0.87192 0.97677 1.69816 1.25323 1.14165 1.21759 1.18321 0.80074 0.87652 0.81530 1.90893 1.58479 1.12792 1.83048 0.94318 0.89109 0.91598 0.94200 0.87558 0.85373 0.84581 0.78706 0.92622 0.92781 0.92541 0.91479 0.79011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -9.32 10.16 -148.98 -1.51 -10.84 16 3 C 0.05 0.85 6.28 71.98 0.45 1.30 16 4 C 0.09 1.62 5.76 86.38 0.50 2.12 16 5 N -0.49 -13.60 2.54 -655.81 -1.67 -15.26 16 6 C 0.25 7.36 9.35 84.36 0.79 8.15 16 7 C -0.28 -9.84 3.82 -20.00 -0.08 -9.91 16 8 C 0.50 22.70 7.06 86.65 0.61 23.31 16 9 O -0.62 -33.64 16.84 -4.12 -0.07 -33.71 16 10 N -0.44 -20.77 3.01 -662.65 -1.99 -22.76 16 11 C 0.12 4.86 8.44 127.77 1.08 5.94 16 12 C -0.34 -18.18 9.22 84.08 0.77 -17.40 16 13 H 0.08 4.41 7.50 -2.91 -0.02 4.39 16 14 C 0.01 0.32 4.94 84.94 0.42 0.74 16 15 N -0.89 -43.48 11.04 21.67 0.24 -43.24 16 16 Si 0.99 39.64 29.59 68.60 2.03 41.67 16 17 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 18 H -0.28 -10.80 7.11 99.48 0.71 -10.10 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 C 0.29 9.46 11.10 85.50 0.95 10.41 16 21 N -0.58 -20.66 10.46 -324.24 -3.39 -24.05 16 22 C 0.62 21.72 8.33 179.49 1.49 23.21 16 23 O -0.57 -22.47 16.68 -4.91 -0.08 -22.56 16 24 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.13 2.30 7.37 -2.38 -0.02 2.29 16 30 H 0.14 1.80 8.02 -2.39 -0.02 1.78 16 31 H 0.20 5.10 8.05 -2.91 -0.02 5.08 16 32 H 0.06 2.26 7.58 -2.39 -0.02 2.24 16 33 H 0.05 2.30 7.19 -2.38 -0.02 2.29 16 34 H 0.06 1.90 6.68 -2.39 -0.02 1.89 16 35 H 0.28 12.68 8.31 -92.71 -0.77 11.91 16 36 H 0.19 5.49 8.06 -2.91 -0.02 5.46 16 Total: -1.00 -71.79 316.40 2.89 -68.90 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.10 Total: 12.22 kcal Atomic # 6 Polarization: 41.39 SS G_CDS: 8.24 Total: 49.63 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -6.81 Total: -105.32 kcal Atomic # 8 Polarization: -65.43 SS G_CDS: -1.67 Total: -67.10 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -71.79 2.89 -68.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197706204.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.558 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds