Wall clock time and date at job start Tue Mar 31 2020 02:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30180 * 126.80257 * 2 1 4 4 O 1.20921 * 111.60526 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56906 * 359.76782 * 4 3 2 6 6 C 1.50698 * 126.77910 * 180.28070 * 5 4 3 7 7 C 1.35454 * 106.44380 * 0.37805 * 5 4 3 8 8 C 1.50703 * 128.00554 * 179.91289 * 7 5 4 9 9 C 1.50701 * 109.47064 * 269.67433 * 8 7 5 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46835 * 180.02562 * 12 11 9 14 14 O 1.21286 * 120.00016 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99944 * 180.02562 * 13 12 11 16 16 C 1.37091 * 119.99890 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00358 * 0.02562 * 16 15 13 18 18 C 1.38951 * 119.99923 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00057 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99931 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47371 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46979 * 120.00413 * 20 18 16 23 23 H 1.48504 * 109.47204 * 240.00125 * 20 18 16 24 24 H 1.08998 * 109.47175 * 269.97179 * 1 2 3 25 25 H 1.09001 * 109.47365 * 29.97178 * 1 2 3 26 26 H 1.09004 * 109.47013 * 149.97293 * 1 2 3 27 27 H 1.09003 * 109.47192 * 270.11205 * 6 5 4 28 28 H 1.08998 * 109.47171 * 30.11340 * 6 5 4 29 29 H 1.09004 * 109.47291 * 150.11341 * 6 5 4 30 30 H 1.09002 * 109.47152 * 149.67525 * 8 7 5 31 31 H 1.09001 * 109.46980 * 29.67626 * 8 7 5 32 32 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 33 33 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 34 34 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 35 35 H 0.97000 * 119.99708 * 359.97438 * 15 13 12 36 36 H 0.96998 * 120.00134 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6025 -0.6067 0.0041 6 6 4.9021 -1.3694 0.0110 7 6 2.3539 -1.1320 -0.0007 8 6 1.9591 -2.5864 -0.0003 9 6 1.8261 -3.0712 -1.4210 10 8 2.0322 -2.3107 -2.3430 11 7 1.4792 -4.3501 -1.6669 12 6 1.3505 -4.8215 -3.0480 13 6 0.9556 -6.2759 -3.0476 14 8 0.7967 -6.8608 -1.9971 15 7 0.7789 -6.9265 -4.2147 16 6 0.4201 -8.2496 -4.2143 17 1 0.2786 -8.7705 -3.2789 18 6 0.2374 -8.9202 -5.4175 19 7 0.4090 -8.2863 -6.5557 20 14 -0.2508 -10.7233 -5.4170 21 1 -0.3795 -11.2010 -4.0168 22 1 -1.5512 -10.8843 -6.1159 23 1 0.7895 -11.5181 -6.1179 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 5.2201 -1.5548 -1.0150 28 1 5.6637 -0.7851 0.5274 29 1 4.7628 -2.3202 0.5255 30 1 1.0054 -2.7038 0.5144 31 1 2.7232 -3.1702 0.5128 32 1 1.3148 -4.9584 -0.9295 33 1 0.5863 -4.2380 -3.5615 34 1 2.3043 -4.7038 -3.5625 35 1 0.9055 -6.4585 -5.0548 36 1 0.2818 -8.7545 -7.3956 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323228480.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:07:58 Heat of formation + Delta-G solvation = -50.410640 kcal Electronic energy + Delta-G solvation = -21193.982764 eV Core-core repulsion = 17680.182058 eV Total energy + Delta-G solvation = -3513.800706 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.89251 -40.98197 -39.88186 -36.40541 -36.14445 -35.24367 -34.58421 -33.36805 -31.31918 -29.62277 -29.11115 -27.85903 -26.28631 -23.19435 -21.51162 -21.36263 -20.96933 -20.05203 -18.86905 -18.33061 -17.95680 -17.19411 -16.95390 -16.81812 -16.28011 -15.79908 -15.67574 -15.15614 -14.77129 -14.69501 -14.28778 -13.94530 -13.94058 -13.82196 -13.66323 -13.54282 -13.43059 -13.09322 -12.94051 -12.82350 -12.43574 -12.10325 -11.90254 -11.56927 -11.17705 -10.76555 -10.54485 -10.18393 -10.07935 -10.06950 -8.50584 -6.00626 0.50369 1.16060 1.35847 1.44094 1.57855 1.61589 1.92347 2.10259 2.23905 2.36671 3.15185 3.16998 3.23106 3.53984 3.75430 3.90736 4.04769 4.25965 4.37907 4.43485 4.46732 4.47430 4.62414 4.63952 4.69652 4.77939 4.81425 4.92880 5.14448 5.27479 5.30709 5.39689 5.92834 6.47060 6.57213 7.04511 7.21067 7.31689 7.45848 7.95188 8.66532 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.039684 B = 0.002902 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.411856 B = 9646.645507 C = 9778.171705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.022 3.978 3 N -0.402 5.402 4 O 0.079 5.921 5 C -0.016 4.016 6 C -0.076 4.076 7 C -0.200 4.200 8 C -0.052 4.052 9 C 0.515 3.485 10 O -0.580 6.580 11 N -0.705 5.705 12 C 0.122 3.878 13 C 0.434 3.566 14 O -0.622 6.622 15 N -0.561 5.561 16 C -0.335 4.335 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.996 3.004 21 H -0.268 1.268 22 H -0.273 1.273 23 H -0.272 1.272 24 H 0.103 0.897 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.134 0.866 31 H 0.141 0.859 32 H 0.417 0.583 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.002 11.391 13.128 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 N -0.112 5.112 4 O 0.018 5.982 5 C -0.080 4.080 6 C -0.133 4.133 7 C -0.204 4.204 8 C -0.092 4.092 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.359 5.359 12 C -0.006 4.006 13 C 0.221 3.779 14 O -0.509 6.509 15 N -0.197 5.197 16 C -0.465 4.465 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.558 5.558 20 Si 0.819 3.181 21 H -0.193 1.193 22 H -0.198 1.198 23 H -0.197 1.197 24 H 0.121 0.879 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.151 0.849 31 H 0.159 0.841 32 H 0.256 0.744 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.232 0.768 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.830 12.783 12.948 18.825 hybrid contribution -0.417 -1.458 -0.714 1.676 sum 4.414 11.324 12.234 17.245 Atomic orbital electron populations 1.20274 0.84556 1.04002 1.04567 1.23911 1.00102 0.88603 1.01043 1.73784 0.89822 1.25001 1.22612 1.84726 1.21449 1.23531 1.68478 1.24902 0.99567 0.83269 1.00241 1.20581 0.88736 0.99188 1.04801 1.20498 0.91993 0.96611 1.11333 1.19942 1.07250 0.89427 0.92565 1.21068 0.75566 0.80678 0.92405 1.90709 1.51666 1.55787 1.47793 1.45691 1.69936 1.12007 1.08314 1.20732 1.03053 0.91286 0.85547 1.20432 0.83876 0.89416 0.84164 1.90472 1.58783 1.69736 1.31955 1.41873 1.59648 1.10820 1.07348 1.19779 1.45506 0.86785 0.94393 0.89432 1.26122 0.96497 1.04589 0.93972 1.69685 1.48742 1.39166 0.98174 0.84822 0.78097 0.76603 0.78537 1.19255 1.19802 1.19728 0.87871 0.90748 0.89811 0.89393 0.87843 0.86919 0.84859 0.84117 0.74440 0.89252 0.88989 0.76809 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.39 71.23 0.74 -0.71 16 2 C 0.02 0.56 7.33 43.57 0.32 0.88 16 3 N -0.40 -11.51 12.07 -49.55 -0.60 -12.10 16 4 O 0.08 2.07 11.20 71.66 0.80 2.87 16 5 C -0.02 -0.35 7.49 25.04 0.19 -0.16 16 6 C -0.08 -0.96 10.30 71.24 0.73 -0.23 16 7 C -0.20 -4.48 4.81 -19.73 -0.10 -4.58 16 8 C -0.05 -0.92 6.03 29.10 0.18 -0.74 16 9 C 0.52 13.71 7.82 87.66 0.69 14.39 16 10 O -0.58 -20.29 16.03 -3.03 -0.05 -20.34 16 11 N -0.70 -20.05 5.53 -466.78 -2.58 -22.63 16 12 C 0.12 4.15 6.15 85.63 0.53 4.67 16 13 C 0.43 19.02 7.85 87.66 0.69 19.71 16 14 O -0.62 -30.33 15.24 -3.05 -0.05 -30.38 16 15 N -0.56 -27.33 5.29 -306.99 -1.62 -28.96 16 16 C -0.34 -18.01 9.68 84.04 0.81 -17.20 16 17 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 18 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 19 N -0.92 -48.07 13.05 21.66 0.28 -47.78 16 20 Si 1.00 40.90 29.55 68.60 2.03 42.92 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.11 0.93 7.44 -2.39 -0.02 0.91 16 30 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.14 1.55 7.44 -2.39 -0.02 1.53 16 32 H 0.42 11.21 7.44 -92.71 -0.69 10.52 16 33 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.40 18.75 7.90 -92.71 -0.73 18.02 16 36 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -71.24 323.45 3.18 -68.06 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: -0.28 Total: 32.41 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 5.24 Total: 15.93 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -4.52 Total: -111.47 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: 0.71 Total: -47.85 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.92 kcal Total: -71.24 3.18 -68.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323228480.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.651 kcal (2) G-P(sol) polarization free energy of solvation -71.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds