Wall clock time and date at job start Tue Mar 31 2020 02:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29945 * 126.28668 * 2 1 4 4 O 1.21304 * 110.24740 * 180.02562 * 3 2 1 5 5 C 1.33643 * 109.81233 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.54883 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46904 * 270.02381 * 6 5 4 8 8 C 1.50696 * 109.47129 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99958 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00331 * 179.97438 * 8 7 6 11 11 C 1.47579 * 134.49442 * 179.97438 * 10 8 7 12 12 C 1.53953 * 86.11613 * 155.35662 * 11 10 8 13 13 O 1.42891 * 113.74249 * 269.15295 * 12 11 10 14 14 C 1.50704 * 113.73748 * 137.95211 * 12 11 10 15 15 H 1.07998 * 120.00120 * 3.90458 * 14 12 11 16 16 C 1.37883 * 119.99782 * 183.91187 * 14 12 11 17 17 N 1.31513 * 120.00053 * 185.23007 * 16 14 12 18 18 Si 1.86796 * 119.99938 * 5.22387 * 16 14 12 19 19 H 1.48495 * 109.47550 * 270.00395 * 18 16 14 20 20 H 1.48511 * 109.47116 * 30.00543 * 18 16 14 21 21 H 1.48499 * 109.47060 * 149.99973 * 18 16 14 22 22 C 1.47582 * 134.49131 * 359.97438 * 10 8 7 23 23 N 1.31122 * 106.89679 * 0.22614 * 5 4 3 24 24 H 1.08995 * 109.46887 * 89.97510 * 1 2 3 25 25 H 1.08997 * 109.47036 * 209.97685 * 1 2 3 26 26 H 1.08996 * 109.46987 * 329.97242 * 1 2 3 27 27 H 1.08998 * 109.46875 * 150.01973 * 6 5 4 28 28 H 1.08999 * 109.47108 * 30.02040 * 6 5 4 29 29 H 1.08998 * 109.47688 * 60.00090 * 7 6 5 30 30 H 1.09008 * 109.46992 * 299.99931 * 7 6 5 31 31 H 1.08998 * 113.77112 * 41.06103 * 11 10 8 32 32 H 1.09000 * 113.87384 * 269.66796 * 11 10 8 33 33 H 0.96707 * 113.99791 * 172.50486 * 13 12 11 34 34 H 0.97008 * 119.99681 * 354.94910 * 17 16 14 35 35 H 1.09003 * 113.77322 * 90.33860 * 22 10 8 36 36 H 1.09009 * 113.76717 * 318.93870 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4420 0.7123 -0.0005 5 6 3.5299 -0.6212 -0.0015 6 6 4.7970 -1.4371 -0.0029 7 6 5.2251 -1.7117 -1.4458 8 6 6.4918 -2.5280 -1.4473 9 8 7.0022 -2.8573 -0.3976 10 7 7.0575 -2.8922 -2.6151 11 6 8.2586 -3.6655 -2.9858 12 6 7.5322 -3.9594 -4.3110 13 8 6.7475 -5.1533 -4.2845 14 6 8.4221 -3.8680 -5.5238 15 1 9.4785 -3.6776 -5.4053 16 6 7.8875 -4.0274 -6.7847 17 7 8.6775 -4.0505 -7.8358 18 14 6.0410 -4.2108 -6.9999 19 1 5.6752 -5.6484 -6.9337 20 1 5.3408 -3.4715 -5.9189 21 1 5.6390 -3.6579 -8.3182 22 6 6.7247 -2.6777 -4.0368 23 7 2.3031 -1.0841 -0.0064 24 1 -0.3633 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5142 27 1 4.6209 -2.3825 0.5101 28 1 5.5845 -0.8860 0.5111 29 1 5.4012 -0.7662 -1.9588 30 1 4.4375 -2.2628 -1.9599 31 1 8.4202 -4.5489 -2.3682 32 1 9.1560 -3.0579 -3.1021 33 1 6.2006 -5.2820 -5.0716 34 1 9.6273 -3.8824 -7.7325 35 1 7.1704 -1.7783 -4.4616 36 1 5.6616 -2.7726 -4.2583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324257130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:35 Heat of formation + Delta-G solvation = 22.974427 kcal Electronic energy + Delta-G solvation = -21593.554276 eV Core-core repulsion = 18082.935786 eV Total energy + Delta-G solvation = -3510.618491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.77659 -39.91814 -37.95846 -36.31175 -34.77388 -34.44967 -32.66951 -31.75701 -29.48499 -28.97018 -26.32293 -25.43703 -24.45974 -23.51320 -21.43480 -20.11469 -18.77317 -18.24269 -18.04239 -17.61878 -16.76088 -16.06396 -15.79993 -15.32201 -14.87948 -14.53254 -14.21341 -13.88609 -13.60483 -13.45003 -13.03950 -12.97790 -12.82782 -12.49007 -12.40049 -12.16539 -12.04006 -11.53130 -11.44542 -11.36647 -11.20716 -10.85770 -10.45329 -10.13519 -10.00126 -9.59191 -9.50653 -9.06677 -8.62481 -8.13368 -6.76393 -4.53092 0.91808 1.99417 2.56073 2.90622 3.04607 3.08226 3.25053 3.27633 3.47243 3.82436 4.12284 4.50502 4.64727 4.71930 4.80773 4.91338 5.06713 5.10087 5.13988 5.24128 5.39597 5.51313 5.57602 5.62885 5.75023 5.81656 5.92295 5.98936 6.17287 6.25697 6.33103 6.54195 7.43392 7.95984 8.01558 8.16943 8.40821 8.43658 8.54553 9.22766 10.59563 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.003923 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.800817 B = 7136.045469 C = 7868.853345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.389 5.389 4 O 0.076 5.924 5 C 0.192 3.808 6 C -0.011 4.011 7 C -0.133 4.133 8 C 0.534 3.466 9 O -0.559 6.559 10 N -0.632 5.632 11 C 0.128 3.872 12 C 0.197 3.803 13 O -0.554 6.554 14 C -0.611 4.611 15 H 0.072 0.928 16 C 0.035 3.965 17 N -0.891 5.891 18 Si 1.032 2.968 19 H -0.275 1.275 20 H -0.268 1.268 21 H -0.280 1.280 22 C 0.057 3.943 23 N -0.482 5.482 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.355 0.645 34 H 0.274 0.726 35 H 0.094 0.906 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.397 7.422 11.200 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.098 5.098 4 O 0.019 5.981 5 C -0.028 4.028 6 C -0.051 4.051 7 C -0.174 4.174 8 C 0.323 3.677 9 O -0.439 6.439 10 N -0.365 5.365 11 C 0.006 3.994 12 C 0.156 3.844 13 O -0.364 6.364 14 C -0.649 4.649 15 H 0.090 0.910 16 C -0.173 4.173 17 N -0.523 5.523 18 Si 0.860 3.140 19 H -0.202 1.202 20 H -0.194 1.194 21 H -0.206 1.206 22 C -0.065 4.065 23 N -0.216 5.216 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.205 0.795 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.737 7.487 11.358 19.333 hybrid contribution 1.088 0.433 0.427 1.246 sum -12.649 7.920 11.785 19.016 Atomic orbital electron populations 1.20136 0.82945 1.04594 1.04365 1.25943 1.00647 0.83581 1.00482 1.74637 0.89435 1.23974 1.21784 1.85300 1.22316 1.24890 1.65640 1.28888 0.97034 0.82049 0.94844 1.19995 0.87625 0.98989 0.98457 1.21540 0.97402 1.01978 0.96524 1.19824 0.85443 0.79802 0.82597 1.90673 1.65448 1.57230 1.30593 1.50132 1.27751 1.53132 1.05500 1.23272 0.88394 0.94004 0.93738 1.20504 0.88519 0.81036 0.94363 1.86459 1.61362 1.43856 1.44699 1.22272 0.96351 1.55654 0.90630 0.90977 1.25817 1.06689 0.92689 0.92116 1.70766 1.07044 1.42649 1.31854 0.84290 0.74799 0.77702 0.77188 1.20186 1.19399 1.20571 1.24801 1.01301 1.02866 0.77569 1.71940 0.99755 1.29336 1.20584 0.89266 0.89005 0.89573 0.86217 0.87038 0.88339 0.88158 0.90637 0.89030 0.79492 0.91524 0.88763 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 36.01 0.38 -0.09 16 2 C 0.17 1.96 8.22 -156.37 -1.28 0.67 16 3 N -0.39 -5.03 12.16 30.90 0.38 -4.65 16 4 O 0.08 0.95 11.31 18.10 0.20 1.15 16 5 C 0.19 2.28 7.77 -13.06 -0.10 2.18 16 6 C -0.01 -0.12 5.13 -27.88 -0.14 -0.27 16 7 C -0.13 -1.66 5.43 -27.89 -0.15 -1.81 16 8 C 0.53 9.06 8.06 -10.99 -0.09 8.97 16 9 O -0.56 -10.88 16.71 5.56 0.09 -10.79 16 10 N -0.63 -11.68 3.61 -178.30 -0.64 -12.32 16 11 C 0.13 2.55 8.23 -2.97 -0.02 2.53 16 12 C 0.20 4.29 1.06 -90.84 -0.10 4.19 16 13 O -0.55 -12.40 13.42 -35.23 -0.47 -12.87 16 14 C -0.61 -15.30 9.04 -34.44 -0.31 -15.61 16 15 H 0.07 1.93 8.04 -52.49 -0.42 1.51 16 16 C 0.03 0.89 5.47 -17.82 -0.10 0.79 16 17 N -0.89 -24.84 13.70 55.43 0.76 -24.08 16 18 Si 1.03 21.38 24.79 -169.99 -4.21 17.17 16 19 H -0.27 -5.43 6.95 56.52 0.39 -5.04 16 20 H -0.27 -4.85 4.86 56.52 0.27 -4.57 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 C 0.06 1.07 6.78 -2.97 -0.02 1.05 16 23 N -0.48 -6.21 11.55 -9.87 -0.11 -6.32 16 24 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.12 1.34 8.10 -51.93 -0.42 0.91 16 28 H 0.11 1.10 8.10 -51.93 -0.42 0.68 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.23 8.14 -51.92 -0.42 0.80 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.09 1.73 8.09 -51.93 -0.42 1.31 16 33 H 0.35 7.35 4.23 45.56 0.19 7.54 16 34 H 0.27 7.62 8.72 -40.82 -0.36 7.26 16 35 H 0.09 1.67 8.09 -51.93 -0.42 1.25 16 36 H 0.07 1.27 6.54 -51.92 -0.34 0.93 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -30.86 310.60 -5.35 -36.21 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -4.07 Total: 9.23 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.94 Total: 2.60 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.38 Total: -47.38 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.18 Total: -22.51 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.21 Total: 17.17 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.86 -5.35 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324257130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.183 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds