Wall clock time and date at job start Tue Mar 31 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35356 * 116.99858 * 2 1 4 4 C 1.38994 * 126.40260 * 95.30195 * 3 2 1 5 5 C 1.46919 * 126.49807 * 0.03863 * 4 3 2 6 6 O 1.21666 * 120.00376 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99814 * 180.02562 * 5 4 3 8 8 C 1.47069 * 136.05892 * 359.62491 * 7 5 4 9 9 C 1.53237 * 88.08235 * 207.20488 * 8 7 5 10 10 O 1.42901 * 114.19793 * 87.73222 * 9 8 7 11 11 C 1.50704 * 114.32564 * 220.47114 * 9 8 7 12 12 H 1.07994 * 120.00218 * 93.76424 * 11 9 8 13 13 C 1.37879 * 119.99870 * 273.75748 * 11 9 8 14 14 N 1.31518 * 119.99951 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00044 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47042 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47472 * 120.00364 * 15 13 11 18 18 H 1.48497 * 109.47155 * 240.00477 * 15 13 11 19 19 C 1.47070 * 136.05800 * 179.97438 * 7 5 4 20 20 C 1.41465 * 107.00642 * 180.02562 * 4 3 2 21 21 N 1.30321 * 108.13623 * 359.97438 * 20 4 3 22 22 N 1.34658 * 126.40496 * 275.30496 * 3 2 1 23 23 C 1.46493 * 125.74349 * 359.73524 * 22 3 2 24 24 H 1.08999 * 109.47296 * 304.96010 * 1 2 3 25 25 H 1.08994 * 109.47240 * 64.96651 * 1 2 3 26 26 H 1.09002 * 109.46603 * 184.96785 * 1 2 3 27 27 H 1.08991 * 113.46650 * 321.93828 * 8 7 5 28 28 H 1.09004 * 113.46450 * 92.38267 * 8 7 5 29 29 H 0.96696 * 114.00028 * 86.30146 * 10 9 8 30 30 H 0.96994 * 119.99672 * 179.97438 * 14 13 11 31 31 H 1.09002 * 113.46902 * 267.62824 * 19 7 5 32 32 H 1.09007 * 113.46812 * 38.00505 * 19 7 5 33 33 H 1.07994 * 125.93492 * 180.02562 * 20 4 3 34 34 H 1.09000 * 109.47242 * 84.86033 * 23 22 3 35 35 H 1.09005 * 109.47406 * 204.86387 * 23 22 3 36 36 H 1.09007 * 109.47268 * 324.85872 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5100 1.8941 1.1139 5 6 2.4302 1.4499 2.5121 6 8 1.9145 0.3817 2.7826 7 7 2.9275 2.2263 3.4952 8 6 3.6055 3.5289 3.5753 9 6 4.2747 3.0433 4.8655 10 8 5.5002 2.3378 4.6600 11 6 4.3624 4.0863 5.9498 12 1 3.5915 4.1478 6.7035 13 6 5.4272 4.9618 5.9797 14 7 6.3659 4.8871 5.0616 15 14 5.5364 6.2541 7.3241 16 1 4.3644 6.1287 8.2275 17 1 6.7847 6.0539 8.1029 18 1 5.5469 7.6065 6.7110 19 6 3.0364 2.1408 4.9593 20 6 3.0766 3.1030 0.6462 21 7 2.9565 3.1320 -0.6511 22 7 2.3170 1.9636 -1.0791 23 6 2.0031 1.6195 -2.4681 24 1 -0.3634 0.5888 0.8422 25 1 -0.3633 0.4348 -0.9311 26 1 -0.3632 -1.0239 0.0890 27 1 4.3096 3.7025 2.7617 28 1 2.9228 4.3648 3.7285 29 1 6.2780 2.9093 4.6014 30 1 7.1147 5.5032 5.0824 31 1 2.2008 2.6035 5.4845 32 1 3.2566 1.1362 5.3204 33 1 3.5306 3.8685 1.2578 34 1 0.9780 1.9142 -2.6927 35 1 2.6866 2.1442 -3.1358 36 1 2.1113 0.5441 -2.6094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001447921528.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:29:34 Heat of formation + Delta-G solvation = 12.098737 kcal Electronic energy + Delta-G solvation = -22379.714644 eV Core-core repulsion = 18868.624548 eV Total energy + Delta-G solvation = -3511.090096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.42954 -39.29797 -38.09800 -37.04424 -33.95831 -33.34416 -32.15414 -30.01056 -28.80779 -27.24490 -26.80682 -25.28045 -24.99738 -22.23327 -20.97207 -20.01911 -18.80287 -17.67012 -17.22794 -16.48165 -16.30366 -15.70237 -15.24630 -14.89305 -14.73608 -14.49474 -14.26074 -14.06467 -13.63184 -13.17007 -12.88267 -12.72628 -12.50920 -12.27673 -11.98241 -11.88240 -11.52751 -11.27731 -11.05540 -10.91652 -10.44628 -10.23949 -10.19474 -9.56696 -9.39517 -9.13906 -8.74484 -8.54854 -8.31208 -7.72178 -6.37608 -4.47816 1.33743 2.13895 2.35784 3.15532 3.25251 3.28812 3.48969 3.67141 3.98748 4.20707 4.43668 4.85827 4.89111 4.92538 5.03514 5.15739 5.19147 5.26179 5.39078 5.47997 5.59433 5.74110 5.97645 6.08556 6.25546 6.45318 6.48558 6.55139 6.72278 6.80920 7.15768 7.37003 7.56306 7.65997 7.84300 8.55355 8.61742 8.94004 9.23810 9.54229 10.69030 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.029818 B = 0.004482 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.817783 B = 6245.500469 C = 6796.985688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.295 6.295 3 C 0.308 3.692 4 C -0.274 4.274 5 C 0.614 3.386 6 O -0.562 6.562 7 N -0.631 5.631 8 C 0.067 3.933 9 C 0.240 3.760 10 O -0.571 6.571 11 C -0.532 4.532 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.111 3.889 20 C 0.092 3.908 21 N -0.284 5.284 22 N -0.376 5.376 23 C 0.096 3.904 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.393 0.607 30 H 0.273 0.727 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.202 0.798 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 -2.430 -11.857 14.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.203 6.203 3 C 0.136 3.864 4 C -0.290 4.290 5 C 0.404 3.596 6 O -0.443 6.443 7 N -0.363 5.363 8 C -0.056 4.056 9 C 0.198 3.802 10 O -0.384 6.384 11 C -0.570 4.570 12 H 0.091 0.909 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.735 3.265 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.012 4.012 20 C -0.094 4.094 21 N -0.107 5.107 22 N -0.166 5.166 23 C -0.045 4.045 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.250 0.750 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.218 0.782 34 H 0.093 0.907 35 H 0.115 0.885 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.015 -3.185 -13.099 16.217 hybrid contribution 0.169 0.934 1.055 1.419 sum -8.846 -2.251 -12.044 15.112 Atomic orbital electron populations 1.23085 0.77270 1.04369 1.00752 1.86031 1.21008 1.20405 1.92882 1.19261 0.96035 0.84690 0.86453 1.20111 1.17033 0.98383 0.93447 1.16386 0.77461 0.83254 0.82479 1.90730 1.47073 1.22803 1.83734 1.49399 1.57475 1.21723 1.07728 1.24268 0.94700 0.84758 1.01838 1.19501 0.82350 0.88106 0.90291 1.86060 1.18102 1.39152 1.95038 1.21484 1.08756 1.14446 1.12362 0.90863 1.25073 0.94873 0.97277 0.95806 1.69275 1.11861 1.38719 1.34011 0.86274 0.78378 0.80539 0.81297 1.19429 1.20667 1.20681 1.23307 0.98047 1.00971 0.78840 1.24435 0.96288 0.97066 0.91605 1.77228 1.18686 1.01089 1.13694 1.48915 1.46195 1.14793 1.06732 1.21917 1.02234 1.02357 0.77964 0.92278 0.93791 0.87749 0.91516 0.89922 0.75018 0.91634 0.89735 0.91521 0.78191 0.90721 0.88531 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 11.13 101.05 1.12 1.58 16 2 O -0.29 -4.63 9.83 -25.01 -0.25 -4.87 16 3 C 0.31 5.18 6.99 -16.03 -0.11 5.07 16 4 C -0.27 -5.25 6.15 -104.87 -0.64 -5.89 16 5 C 0.61 13.56 8.05 -12.75 -0.10 13.46 16 6 O -0.56 -13.67 17.16 -2.03 -0.03 -13.70 16 7 N -0.63 -13.79 3.69 -186.83 -0.69 -14.48 16 8 C 0.07 1.43 6.50 -8.64 -0.06 1.37 16 9 C 0.24 5.73 1.57 -91.38 -0.14 5.59 16 10 O -0.57 -14.87 13.54 -35.23 -0.48 -15.35 16 11 C -0.53 -13.16 8.69 -34.44 -0.30 -13.46 16 12 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.07 1.77 5.39 -17.82 -0.10 1.67 16 14 N -0.90 -22.50 11.01 55.43 0.61 -21.89 16 15 Si 0.91 19.20 29.54 -169.99 -5.02 14.18 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 C 0.11 2.44 8.04 -8.50 -0.07 2.38 16 20 C 0.09 1.60 11.13 -16.96 -0.19 1.41 16 21 N -0.28 -4.62 12.48 30.88 0.39 -4.23 16 22 N -0.38 -5.43 3.99 -67.67 -0.27 -5.70 16 23 C 0.10 0.85 11.38 59.84 0.68 1.53 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.39 6.16 -51.93 -0.32 1.07 16 28 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 29 H 0.39 10.30 6.32 45.56 0.29 10.59 16 30 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 32 H 0.07 1.51 8.14 -51.92 -0.42 1.09 16 33 H 0.20 3.27 5.22 -52.49 -0.27 2.99 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -31.27 314.58 -4.56 -35.82 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.65 Total: 10.78 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 0.09 Total: 14.70 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.04 Total: -46.30 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.76 Total: -33.92 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.27 -4.56 -35.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001447921528.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.924 kcal (2) G-P(sol) polarization free energy of solvation -31.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds