Wall clock time and date at job start Tue Mar 31 2020 03:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86792 * 119.99951 * 2 1 4 4 H 1.48503 * 109.47350 * 270.00066 * 3 2 1 5 5 H 1.48500 * 109.47443 * 30.00077 * 3 2 1 6 6 H 1.48499 * 109.47291 * 149.99898 * 3 2 1 7 7 C 1.38817 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99730 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00039 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.52350 * 325.08207 * 10 9 7 12 12 C 1.53038 * 109.49782 * 85.16393 * 10 9 7 13 13 C 1.53041 * 109.53855 * 181.31673 * 12 10 9 14 14 C 1.53621 * 109.24223 * 298.51020 * 13 12 10 15 15 N 1.46920 * 108.54262 * 54.85355 * 14 13 12 16 16 C 1.34779 * 120.62943 * 126.37052 * 15 14 13 17 17 O 1.21277 * 120.00392 * 179.72350 * 16 15 14 18 18 C 1.50702 * 119.99910 * 359.71953 * 16 15 14 19 19 H 1.08997 * 115.55250 * 50.15529 * 18 16 15 20 20 C 1.53004 * 117.49996 * 195.86383 * 18 16 15 21 21 C 1.53003 * 60.00162 * 107.48888 * 20 18 16 22 22 H 1.08995 * 117.51668 * 107.47774 * 21 20 18 23 23 C 1.50693 * 117.50003 * 252.51448 * 21 20 18 24 24 N 1.34772 * 120.00360 * 161.72952 * 23 21 20 25 25 O 1.21287 * 119.99906 * 341.45031 * 23 21 20 26 26 C 1.46930 * 118.74233 * 306.09407 * 15 14 13 27 27 H 0.97001 * 120.00223 * 359.97438 * 1 2 3 28 28 H 0.97010 * 119.99927 * 359.97438 * 9 7 2 29 29 H 1.09005 * 109.45689 * 301.33937 * 12 10 9 30 30 H 1.09001 * 109.46527 * 61.30930 * 12 10 9 31 31 H 1.08996 * 109.49715 * 58.58800 * 13 12 10 32 32 H 1.09004 * 109.49546 * 178.64797 * 13 12 10 33 33 H 1.09009 * 109.73743 * 295.11822 * 14 13 12 34 34 H 1.09000 * 109.66146 * 174.55122 * 14 13 12 35 35 H 1.08995 * 117.49335 * 359.97438 * 20 18 16 36 36 H 1.09002 * 117.49881 * 214.98152 * 20 18 16 37 37 H 0.97002 * 120.00098 * 359.97438 * 24 23 21 38 38 H 0.96998 * 120.00584 * 179.97438 * 24 23 21 39 39 H 1.08997 * 109.58746 * 173.64788 * 26 15 14 40 40 H 1.08994 * 109.58684 * 294.07617 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9692 -3.5508 -0.5903 12 6 2.4199 -4.0390 1.4354 13 6 3.2136 -5.3475 1.4326 14 6 2.3436 -6.4661 0.8397 15 7 1.8765 -6.0413 -0.4869 16 6 2.0782 -6.8205 -1.5680 17 8 1.6834 -6.4610 -2.6569 18 6 2.7944 -8.1385 -1.4237 19 1 2.4220 -8.7921 -0.6349 20 6 3.3219 -8.7993 -2.6990 21 6 4.2976 -8.1606 -1.7085 22 1 4.9140 -8.8287 -1.1071 23 6 4.9485 -6.8627 -2.1118 24 7 5.5111 -6.0719 -1.1767 25 8 4.9704 -6.5321 -3.2786 26 6 1.1798 -4.7537 -0.6118 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3881 0.0002 29 1 3.0245 -3.2484 1.8801 30 1 1.5075 -4.1692 2.0173 31 1 4.1140 -5.2256 0.8304 32 1 3.4916 -5.6065 2.4543 33 1 1.4863 -6.6485 1.4878 34 1 2.9331 -7.3780 0.7448 35 1 3.1503 -8.2808 -3.6423 36 1 3.2963 -9.8878 -2.7494 37 1 5.4968 -6.3379 -0.2440 38 1 5.9304 -5.2366 -1.4363 39 1 1.0012 -4.5354 -1.6646 40 1 0.2297 -4.7992 -0.0796 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000208564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:13:27 Heat of formation + Delta-G solvation = -35.914271 kcal Electronic energy + Delta-G solvation = -23049.146247 eV Core-core repulsion = 19671.807245 eV Total energy + Delta-G solvation = -3377.339002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70540 -39.18264 -37.50899 -35.88923 -34.48670 -33.66202 -32.19320 -31.26943 -28.55116 -25.99619 -24.86841 -24.19349 -22.89341 -22.11479 -20.49395 -19.99234 -18.70086 -17.88808 -17.20624 -17.15928 -16.34995 -15.88978 -15.40222 -15.02698 -14.39815 -14.26010 -14.02158 -13.99615 -13.57034 -13.48400 -13.05853 -12.91538 -12.63593 -12.27885 -12.03324 -11.21425 -11.01300 -10.96080 -10.91572 -10.83667 -10.67072 -10.45356 -10.39536 -10.10738 -10.06611 -9.76668 -9.72258 -9.59866 -8.93166 -8.42368 -7.00776 -5.79241 -3.08974 2.29523 2.67191 2.97687 3.27089 3.42593 3.47618 3.49013 3.65774 4.33840 4.43578 4.55128 4.57285 4.76435 4.89326 4.94817 5.06945 5.19814 5.36290 5.47477 5.49316 5.54024 5.64712 5.71244 5.77448 5.96120 5.98173 6.12449 6.20059 6.33152 6.50365 6.66861 6.70248 6.83819 7.00950 7.22017 7.53940 7.67042 8.19047 8.29412 8.38746 9.49820 10.04950 10.39810 11.43258 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022642 B = 0.004660 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.352686 B = 6007.656693 C = 6231.400527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.171 3.829 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.133 4.133 14 C 0.107 3.893 15 N -0.600 5.600 16 C 0.533 3.467 17 O -0.525 6.525 18 C -0.165 4.165 19 H 0.135 0.865 20 C -0.115 4.115 21 C -0.173 4.173 22 H 0.136 0.864 23 C 0.542 3.458 24 N -0.847 5.847 25 O -0.527 6.527 26 C 0.106 3.894 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.399 0.601 38 H 0.405 0.595 39 H 0.092 0.908 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.872 -20.237 4.719 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.060 3.940 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.016 4.016 15 N -0.333 5.333 16 C 0.319 3.681 17 O -0.401 6.401 18 C -0.186 4.186 19 H 0.153 0.847 20 C -0.153 4.153 21 C -0.194 4.194 22 H 0.154 0.846 23 C 0.325 3.675 24 N -0.411 5.411 25 O -0.402 6.402 26 C -0.017 4.017 27 H 0.066 0.934 28 H 0.218 0.782 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.228 0.772 38 H 0.236 0.764 39 H 0.110 0.890 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.678 -19.809 3.307 21.877 hybrid contribution 0.330 1.173 0.777 1.446 sum 9.008 -18.635 4.084 21.097 Atomic orbital electron populations 1.69658 1.05122 1.25757 1.57390 1.24741 0.95507 0.97695 1.02770 0.86195 0.78591 0.83817 0.77593 1.21642 1.21749 1.20787 1.19183 0.90917 0.83888 1.43076 0.91223 1.42306 1.05803 0.99513 1.88549 1.20440 0.94606 0.85966 0.93016 0.93342 1.22285 0.99632 0.95152 1.00714 1.22048 0.98737 0.96169 1.00292 1.21860 0.98442 0.97495 0.83775 1.48001 1.57594 1.20305 1.07388 1.19549 0.79852 0.84583 0.84070 1.90743 1.50476 1.72986 1.25908 1.22324 0.94111 0.98428 1.03776 0.84723 1.23032 0.97151 1.00362 0.94733 1.22311 0.91731 0.98460 1.06912 0.84621 1.19538 0.77783 0.84541 0.85613 1.43801 1.61241 1.25400 1.10693 1.90790 1.57494 1.73511 1.18382 1.22022 0.94997 0.81297 1.03372 0.93434 0.78198 0.91568 0.92438 0.91978 0.91307 0.91279 0.90337 0.86272 0.86912 0.77199 0.76366 0.89008 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.35 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.87 5.12 -53.31 -0.27 -18.15 16 10 C 0.17 3.33 2.92 -67.81 -0.20 3.13 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.14 -2.19 5.46 -26.69 -0.15 -2.33 16 13 C -0.13 -1.44 6.10 -26.39 -0.16 -1.60 16 14 C 0.11 1.07 6.36 -3.49 -0.02 1.05 16 15 N -0.60 -8.48 2.97 -172.50 -0.51 -8.99 16 16 C 0.53 8.12 6.45 -10.98 -0.07 8.05 16 17 O -0.53 -10.63 15.79 5.56 0.09 -10.54 16 18 C -0.16 -1.67 4.45 -91.76 -0.41 -2.07 16 19 H 0.14 0.89 7.63 -51.93 -0.40 0.49 16 20 C -0.12 -1.17 9.55 -26.73 -0.26 -1.43 16 21 C -0.17 -1.59 6.19 -91.77 -0.57 -2.16 16 22 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 23 C 0.54 7.00 6.84 -10.99 -0.08 6.93 16 24 N -0.85 -8.16 8.57 31.22 0.27 -7.89 16 25 O -0.53 -9.59 17.26 5.55 0.10 -9.49 16 26 C 0.11 1.89 5.90 -3.71 -0.02 1.86 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.38 10.15 7.80 -40.82 -0.32 9.83 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.64 6.70 -51.93 -0.35 0.29 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.08 0.54 6.03 -51.93 -0.31 0.22 16 35 H 0.12 1.65 7.41 -51.93 -0.39 1.26 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.40 2.58 7.73 -40.82 -0.32 2.26 16 38 H 0.41 4.01 8.93 -40.82 -0.36 3.65 16 39 H 0.09 1.92 7.01 -51.93 -0.36 1.56 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -36.43 329.76 -7.56 -43.99 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -5.73 Total: 11.80 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -2.17 Total: 4.27 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.21 Total: -62.38 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.18 Total: -20.03 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.43 -7.56 -43.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000208564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.079 kcal (2) G-P(sol) polarization free energy of solvation -36.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds