Wall clock time and date at job start Tue Mar 31 2020 02:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47237 * 2 1 4 4 C 1.53000 * 109.47068 * 239.99684 * 2 1 3 5 5 N 1.46507 * 109.47122 * 185.00074 * 4 2 1 6 6 C 1.46498 * 120.00022 * 270.00074 * 5 4 2 7 7 C 1.36936 * 119.99936 * 89.99895 * 5 4 2 8 8 H 1.08009 * 119.99933 * 337.61955 * 7 5 4 9 9 C 1.38809 * 120.00211 * 157.89533 * 7 5 4 10 10 N 1.31618 * 120.00509 * 155.45524 * 9 7 5 11 11 Si 1.86802 * 119.99822 * 335.44898 * 9 7 5 12 12 H 1.48503 * 109.47045 * 84.77747 * 11 9 7 13 13 H 1.48497 * 109.47199 * 204.77897 * 11 9 7 14 14 H 1.48503 * 109.47292 * 324.78119 * 11 9 7 15 15 N 1.46502 * 109.47027 * 119.99867 * 2 1 3 16 16 C 1.34775 * 119.99597 * 274.99992 * 15 2 1 17 17 O 1.21504 * 120.00526 * 359.97438 * 16 15 2 18 18 C 1.48163 * 119.99882 * 179.97438 * 16 15 2 19 19 C 1.39892 * 120.90982 * 179.97438 * 18 16 15 20 20 C 1.38040 * 119.06666 * 180.02562 * 19 18 16 21 21 N 1.31879 * 120.93554 * 359.97438 * 20 19 18 22 22 C 1.31960 * 122.01466 * 0.02562 * 21 20 19 23 23 F 1.35097 * 119.58629 * 179.97438 * 22 21 20 24 24 C 1.38525 * 120.82161 * 359.72107 * 22 21 20 25 25 H 1.08991 * 109.47269 * 300.00356 * 1 2 3 26 26 H 1.09005 * 109.46766 * 60.00790 * 1 2 3 27 27 H 1.08997 * 109.47237 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47504 * 65.00163 * 4 2 1 29 29 H 1.09004 * 109.47484 * 304.99750 * 4 2 1 30 30 H 1.08999 * 109.46953 * 274.38457 * 6 5 4 31 31 H 1.09003 * 109.46759 * 34.38880 * 6 5 4 32 32 H 1.09001 * 109.46965 * 154.38076 * 6 5 4 33 33 H 0.96993 * 120.00541 * 180.02562 * 10 9 7 34 34 H 0.96999 * 119.99886 * 95.00025 * 15 2 1 35 35 H 1.07996 * 120.46663 * 0.02883 * 19 18 16 36 36 H 1.08001 * 119.53228 * 179.97438 * 20 19 18 37 37 H 1.08005 * 120.50924 * 180.29043 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.3344 0.2339 -1.7613 7 6 4.0850 -1.9159 -0.6022 8 1 3.5332 -2.5021 0.1179 9 6 5.3890 -2.2636 -0.9268 10 7 6.1169 -2.9557 -0.0762 11 14 6.1109 -1.7493 -2.5712 12 1 6.6510 -0.3701 -2.4651 13 1 7.2045 -2.6818 -2.9451 14 1 5.0510 -1.7872 -3.6107 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0181 2.3571 17 8 1.8585 1.1609 2.4115 18 6 2.6403 -0.7166 3.5670 19 6 2.7817 -0.0371 4.7817 20 6 3.2452 -0.7251 5.8850 21 7 3.5527 -2.0051 5.8059 22 6 3.4346 -2.6847 4.6809 23 9 3.7642 -3.9946 4.6552 24 6 2.9720 -2.0730 3.5274 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.7517 -0.1585 -2.1370 29 1 1.6054 -1.7199 -1.2951 30 1 4.4779 0.0499 -2.8260 31 1 3.8435 1.1971 -1.6219 32 1 5.3025 0.2438 -1.2604 33 1 7.0282 -3.1983 -0.3030 34 1 2.2490 -1.6317 1.1527 35 1 2.5317 1.0109 4.8551 36 1 3.3576 -0.2078 6.8264 37 1 2.8729 -2.6352 2.6105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754301686.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:17 Heat of formation + Delta-G solvation = -10.823578 kcal Electronic energy + Delta-G solvation = -22359.443527 eV Core-core repulsion = 18859.732234 eV Total energy + Delta-G solvation = -3499.711293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.84358 -40.40909 -38.92389 -36.69339 -34.32034 -33.02332 -31.65290 -30.93220 -30.23261 -26.89214 -25.76190 -24.98543 -23.57869 -22.10166 -20.80295 -20.10134 -18.41015 -17.23347 -16.86027 -16.32759 -15.96078 -15.83338 -15.49777 -15.32366 -14.66838 -14.45673 -14.13575 -13.70574 -13.54714 -13.26373 -12.98128 -12.74152 -12.61808 -12.29246 -12.15566 -12.10737 -11.78809 -11.23741 -11.00702 -10.57720 -10.32883 -10.15412 -10.07902 -9.95662 -9.58803 -9.54640 -9.00046 -8.73883 -8.62257 -7.14581 -6.07636 -3.40065 0.67912 0.93278 3.02110 3.29107 3.37517 3.44855 3.46531 3.58807 3.81626 4.44376 4.46469 4.76478 4.83982 4.92075 4.97357 5.24647 5.34202 5.47382 5.57618 5.62680 5.67759 5.73677 5.90251 5.99657 6.02489 6.17926 6.19900 6.30630 6.41002 6.55596 6.61456 6.68652 6.88315 7.57846 7.74297 7.87756 8.13478 8.47394 8.79626 9.60526 9.93584 11.06945 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.006656 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.551904 B = 4205.632449 C = 5482.209844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.081 0.919 4 C 0.140 3.860 5 N -0.609 5.609 6 C 0.104 3.896 7 C -0.270 4.270 8 H 0.083 0.917 9 C 0.028 3.972 10 N -0.898 5.898 11 Si 0.889 3.111 12 H -0.287 1.287 13 H -0.306 1.306 14 H -0.279 1.279 15 N -0.683 5.683 16 C 0.559 3.441 17 O -0.545 6.545 18 C -0.052 4.052 19 C -0.133 4.133 20 C 0.126 3.874 21 N -0.505 5.505 22 C 0.309 3.691 23 F -0.107 7.107 24 C -0.148 4.148 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.008 0.992 31 H 0.032 0.968 32 H 0.060 0.940 33 H 0.264 0.736 34 H 0.407 0.593 35 H 0.154 0.846 36 H 0.172 0.828 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.383 4.337 5.756 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.011 3.989 3 H 0.099 0.901 4 C 0.012 3.988 5 N -0.332 5.332 6 C -0.041 4.041 7 C -0.398 4.398 8 H 0.100 0.900 9 C -0.172 4.172 10 N -0.539 5.539 11 Si 0.720 3.280 12 H -0.215 1.215 13 H -0.234 1.234 14 H -0.205 1.205 15 N -0.334 5.334 16 C 0.344 3.656 17 O -0.424 6.424 18 C -0.063 4.063 19 C -0.154 4.154 20 C -0.030 4.030 21 N -0.221 5.221 22 C 0.155 3.845 23 F -0.086 7.086 24 C -0.170 4.170 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.245 0.755 35 H 0.171 0.829 36 H 0.189 0.811 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.102 4.569 6.481 12.072 hybrid contribution 0.623 -0.139 -1.707 1.823 sum -8.479 4.431 4.774 10.692 Atomic orbital electron populations 1.22130 0.95944 1.01811 1.01979 1.21852 0.92638 0.98304 0.86113 0.90091 1.21130 0.84965 0.99106 0.93594 1.44100 0.99904 1.20565 1.68599 1.21382 0.96237 0.90579 0.95903 1.18671 0.97436 1.05484 1.18221 0.89992 1.25138 0.96465 0.97693 0.97896 1.69869 1.08752 1.41514 1.33799 0.87000 0.77897 0.76612 0.86535 1.21464 1.23391 1.20459 1.45920 1.64222 1.14730 1.08548 1.17955 0.78180 0.86384 0.83105 1.90720 1.51323 1.15189 1.85193 1.20369 0.97878 0.92886 0.95184 1.22291 0.98834 1.02378 0.91880 1.22463 0.93909 0.87782 0.98841 1.66849 1.17315 1.10412 1.27498 1.17947 0.96355 0.80078 0.90082 1.91657 1.89644 1.30733 1.96563 1.22149 1.00124 0.95382 0.99326 0.92609 0.91813 0.92590 0.92449 0.91989 0.97373 0.94905 0.92124 0.92614 0.75452 0.82874 0.81142 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 2 C 0.12 1.88 2.88 -67.93 -0.20 1.69 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 4 C 0.14 2.38 5.34 -4.04 -0.02 2.36 16 5 N -0.61 -13.16 2.63 -181.11 -0.48 -13.64 16 6 C 0.10 2.19 8.32 59.85 0.50 2.69 16 7 C -0.27 -6.75 9.23 -15.06 -0.14 -6.89 16 8 H 0.08 2.06 6.40 -52.48 -0.34 1.72 16 9 C 0.03 0.77 5.15 -17.43 -0.09 0.68 16 10 N -0.90 -25.93 13.97 55.49 0.78 -25.15 16 11 Si 0.89 21.78 24.05 -169.99 -4.09 17.69 16 12 H -0.29 -6.86 6.34 56.52 0.36 -6.50 16 13 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 14 H -0.28 -6.78 6.93 56.52 0.39 -6.39 16 15 N -0.68 -11.51 4.45 -54.65 -0.24 -11.76 16 16 C 0.56 9.72 7.76 -12.18 -0.09 9.62 16 17 O -0.55 -10.55 16.11 5.36 0.09 -10.46 16 18 C -0.05 -0.82 5.91 -104.66 -0.62 -1.43 16 19 C -0.13 -1.76 9.68 -39.04 -0.38 -2.14 16 20 C 0.13 1.55 11.17 -17.60 -0.20 1.35 16 21 N -0.51 -7.68 10.35 -13.65 -0.14 -7.82 16 22 C 0.31 5.00 8.41 -17.39 -0.15 4.86 16 23 F -0.11 -1.81 17.29 2.25 0.04 -1.77 16 24 C -0.15 -2.34 9.59 -38.93 -0.37 -2.71 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 30 H 0.01 0.18 5.84 -51.93 -0.30 -0.12 16 31 H 0.03 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.06 1.40 5.69 -51.93 -0.30 1.11 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.41 6.91 4.64 -40.82 -0.19 6.72 16 35 H 0.15 1.80 7.74 -52.49 -0.41 1.39 16 36 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.16 2.44 6.53 -52.48 -0.34 2.09 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -30.80 311.58 -5.16 -35.96 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.40 Total: 3.88 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: -1.40 Total: 8.37 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.09 Total: -58.36 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.09 Total: 17.69 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.80 -5.16 -35.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754301686.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.132 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds