Wall clock time and date at job start Tue Mar 31 2020 02:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47518 * 2 1 4 4 C 1.52999 * 109.47281 * 120.00167 * 2 1 3 5 5 N 1.46500 * 109.47319 * 175.00314 * 4 2 1 6 6 C 1.46504 * 119.99794 * 269.99894 * 5 4 2 7 7 C 1.36934 * 120.00354 * 89.99829 * 5 4 2 8 8 H 1.08008 * 119.99574 * 23.66566 * 7 5 4 9 9 C 1.38814 * 119.99974 * 203.66698 * 7 5 4 10 10 N 1.31612 * 119.99995 * 11.23092 * 9 7 5 11 11 Si 1.86797 * 119.99693 * 191.23076 * 9 7 5 12 12 H 1.48501 * 109.47471 * 90.00237 * 11 9 7 13 13 H 1.48499 * 109.46906 * 209.99882 * 11 9 7 14 14 H 1.48502 * 109.47376 * 329.99959 * 11 9 7 15 15 N 1.46498 * 109.47200 * 240.00077 * 2 1 3 16 16 C 1.34778 * 119.99939 * 85.00149 * 15 2 1 17 17 O 1.21514 * 120.00377 * 359.97438 * 16 15 2 18 18 C 1.48155 * 119.99863 * 180.27653 * 16 15 2 19 19 C 1.39900 * 120.90887 * 179.72438 * 18 16 15 20 20 C 1.38044 * 119.06753 * 179.97438 * 19 18 16 21 21 N 1.31880 * 120.93833 * 0.02641 * 20 19 18 22 22 C 1.31964 * 122.00594 * 359.97359 * 21 20 19 23 23 F 1.35101 * 119.58335 * 179.97438 * 22 21 20 24 24 C 1.38520 * 120.83225 * 359.73719 * 22 21 20 25 25 H 1.09003 * 109.47337 * 299.99874 * 1 2 3 26 26 H 1.09001 * 109.47092 * 59.99862 * 1 2 3 27 27 H 1.09000 * 109.47410 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46683 * 294.99822 * 4 2 1 29 29 H 1.08997 * 109.47130 * 55.00064 * 4 2 1 30 30 H 1.08993 * 109.47185 * 94.61584 * 6 5 4 31 31 H 1.08993 * 109.47053 * 214.61978 * 6 5 4 32 32 H 1.09002 * 109.46910 * 334.61772 * 6 5 4 33 33 H 0.97001 * 120.00167 * 179.97438 * 10 9 7 34 34 H 0.96998 * 120.00352 * 264.99662 * 15 2 1 35 35 H 1.08002 * 120.46447 * 359.95189 * 19 18 16 36 36 H 1.08000 * 119.52700 * 179.97438 * 20 19 18 37 37 H 1.08002 * 120.51697 * 180.28817 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1258 -1.9919 0.5612 7 6 4.2798 0.1648 1.7240 8 1 3.8835 0.8065 2.4972 9 6 5.5796 0.3449 1.2711 10 7 5.9915 -0.2793 0.1881 11 14 6.7440 1.4731 2.1988 12 1 7.4753 0.6916 3.2281 13 1 7.7157 2.0711 1.2484 14 1 5.9666 2.5536 2.8573 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3571 17 8 1.8576 1.1607 -2.4118 18 6 2.6351 -0.7181 -3.5683 19 6 2.7705 -0.0401 -4.7845 20 6 3.2292 -0.7294 -5.8891 21 7 3.5378 -2.0091 -5.8098 22 6 3.4252 -2.6872 -4.6833 23 9 3.7546 -3.9972 -4.6575 24 6 2.9782 -2.0715 -3.5257 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7516 -0.1583 2.1370 29 1 1.6054 -1.7198 1.2951 30 1 4.3546 -1.7637 -0.4798 31 1 5.0463 -2.2397 1.0896 32 1 3.4420 -2.8396 0.6054 33 1 6.8996 -0.1532 -0.1287 34 1 2.2490 -1.6317 -1.1527 35 1 2.5193 1.0077 -4.8583 36 1 3.3362 -0.2134 -6.8318 37 1 2.8924 -2.6302 -2.6054 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754301687.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:20 Heat of formation + Delta-G solvation = -15.497320 kcal Electronic energy + Delta-G solvation = -22360.189397 eV Core-core repulsion = 18860.275435 eV Total energy + Delta-G solvation = -3499.913961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.128 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.02120 -40.44897 -38.89123 -36.45329 -34.17049 -33.06467 -31.32379 -30.86818 -30.07734 -26.26306 -25.71177 -24.98681 -23.65443 -21.94924 -20.72978 -20.11757 -18.36055 -17.34790 -16.81110 -16.49333 -16.10507 -15.77462 -15.42680 -14.92068 -14.64184 -14.42510 -13.81109 -13.71933 -13.40991 -13.24712 -13.08354 -12.91719 -12.24101 -12.20884 -12.04472 -11.51574 -11.19236 -10.89932 -10.84253 -10.61793 -10.31098 -10.13739 -10.02306 -9.99071 -9.91348 -9.54959 -9.11092 -8.70083 -8.50523 -6.81900 -5.78209 -3.25154 0.61848 0.82843 3.01916 3.35976 3.36934 3.42815 3.43896 3.48944 3.79128 4.35872 4.46368 4.68443 4.84265 4.88906 5.26388 5.32755 5.42126 5.49481 5.59994 5.65832 5.75681 5.90461 5.96530 6.02388 6.14955 6.39263 6.43963 6.45388 6.54912 6.77533 6.98854 7.24004 7.48272 7.57607 7.75763 7.87501 8.33495 8.52785 9.17119 9.79195 10.27022 11.26913 Molecular weight = 281.13amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.005833 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.437354 B = 4799.521664 C = 5427.393004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 H 0.089 0.911 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.159 3.841 7 C -0.258 4.258 8 H 0.069 0.931 9 C 0.006 3.994 10 N -0.904 5.904 11 Si 0.904 3.096 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.279 1.279 15 N -0.685 5.685 16 C 0.560 3.440 17 O -0.535 6.535 18 C -0.045 4.045 19 C -0.130 4.130 20 C 0.130 3.870 21 N -0.505 5.505 22 C 0.305 3.695 23 F -0.111 7.111 24 C -0.157 4.157 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.031 0.969 31 H 0.044 0.956 32 H -0.005 1.005 33 H 0.252 0.748 34 H 0.396 0.604 35 H 0.156 0.844 36 H 0.173 0.827 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -3.871 -7.502 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.008 3.992 3 H 0.107 0.893 4 C 0.013 3.987 5 N -0.319 5.319 6 C 0.014 3.986 7 C -0.388 4.388 8 H 0.086 0.914 9 C -0.193 4.193 10 N -0.549 5.549 11 Si 0.735 3.265 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.334 5.334 16 C 0.345 3.655 17 O -0.413 6.413 18 C -0.056 4.056 19 C -0.151 4.151 20 C -0.026 4.026 21 N -0.221 5.221 22 C 0.151 3.849 23 F -0.090 7.090 24 C -0.179 4.179 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.013 0.987 33 H 0.062 0.938 34 H 0.231 0.769 35 H 0.173 0.827 36 H 0.190 0.810 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.752 -3.531 -8.268 12.547 hybrid contribution 0.833 0.309 1.097 1.411 sum -7.919 -3.221 -7.171 11.159 Atomic orbital electron populations 1.22155 0.96526 1.01270 1.01911 1.21988 0.91870 0.99319 0.85987 0.89276 1.21222 0.85850 0.97306 0.94283 1.43888 0.99018 1.20874 1.68136 1.20877 0.94732 0.85072 0.97872 1.19174 0.94618 1.10634 1.14330 0.91357 1.25029 0.98904 0.99016 0.96303 1.70020 1.17283 1.45598 1.22000 0.86257 0.80927 0.80438 0.78909 1.21511 1.21791 1.20464 1.45735 1.64823 1.13766 1.09121 1.17867 0.78279 0.86435 0.82948 1.90741 1.50576 1.15010 1.84996 1.20449 0.97041 0.92788 0.95352 1.22348 0.98395 1.02517 0.91802 1.22497 0.93538 0.87679 0.98923 1.66852 1.17240 1.10528 1.27441 1.17930 0.96856 0.79915 0.90180 1.91637 1.89786 1.30920 1.96621 1.22030 1.01350 0.95478 0.99015 0.91798 0.92886 0.93069 0.92002 0.93905 0.95126 0.93692 0.98656 0.93790 0.76895 0.82677 0.80996 0.83110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.48 37.15 0.35 -1.89 16 2 C 0.12 2.04 2.88 -67.94 -0.20 1.85 16 3 H 0.09 1.92 7.58 -51.93 -0.39 1.52 16 4 C 0.14 2.60 5.33 -4.04 -0.02 2.58 16 5 N -0.60 -13.82 2.78 -181.12 -0.50 -14.32 16 6 C 0.16 3.56 7.60 59.85 0.46 4.02 16 7 C -0.26 -6.80 9.66 -15.06 -0.15 -6.95 16 8 H 0.07 1.78 7.85 -52.48 -0.41 1.37 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.90 -25.58 10.66 55.49 0.59 -24.99 16 11 Si 0.90 21.77 29.57 -169.99 -5.03 16.74 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 N -0.69 -11.86 4.37 -54.66 -0.24 -12.10 16 16 C 0.56 10.21 7.76 -12.19 -0.09 10.12 16 17 O -0.54 -11.25 16.11 5.35 0.09 -11.16 16 18 C -0.05 -0.70 5.91 -104.66 -0.62 -1.32 16 19 C -0.13 -1.73 9.68 -39.03 -0.38 -2.11 16 20 C 0.13 1.54 11.17 -17.60 -0.20 1.34 16 21 N -0.51 -7.20 10.35 -13.64 -0.14 -7.34 16 22 C 0.30 4.44 8.41 -17.39 -0.15 4.29 16 23 F -0.11 -1.60 17.29 2.25 0.04 -1.56 16 24 C -0.16 -2.24 9.59 -38.93 -0.37 -2.61 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.11 8.03 -51.92 -0.42 0.69 16 29 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 30 H 0.03 0.73 6.90 -51.93 -0.36 0.37 16 31 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 32 H -0.01 -0.09 7.84 -51.93 -0.41 -0.50 16 33 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.40 6.26 5.31 -40.82 -0.22 6.04 16 35 H 0.16 1.91 7.74 -52.49 -0.41 1.50 16 36 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.15 1.93 6.53 -52.49 -0.34 1.59 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -31.38 318.79 -6.41 -37.79 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -4.57 Total: 2.72 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.45 Total: 9.41 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.29 Total: -58.75 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.38 -6.41 -37.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754301687.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.288 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds