Wall clock time and date at job start Tue Mar 31 2020 03:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31266 * 1 3 3 Si 1.86801 * 119.99695 * 2 1 4 4 H 1.48496 * 109.47197 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47130 * 299.99615 * 3 2 1 6 6 H 1.48497 * 109.47324 * 60.00011 * 3 2 1 7 7 C 1.39046 * 120.00440 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00102 * 162.57498 * 7 2 1 9 9 N 1.37176 * 120.00031 * 342.57964 * 7 2 1 10 10 C 1.36076 * 119.88014 * 330.82840 * 9 7 2 11 11 N 1.30102 * 122.98578 * 180.02562 * 10 9 7 12 12 C 1.34147 * 121.88941 * 359.95489 * 11 10 9 13 13 C 1.40445 * 119.23044 * 0.04267 * 12 11 10 14 14 C 1.40750 * 107.27372 * 180.02562 * 13 12 11 15 15 N 1.30515 * 108.38921 * 359.97438 * 14 13 12 16 16 N 1.36178 * 134.21567 * 180.02562 * 12 11 10 17 17 C 1.40017 * 125.87141 * 359.97438 * 16 12 11 18 18 C 1.38884 * 120.07089 * 324.73185 * 17 16 12 19 19 C 1.38108 * 119.92570 * 179.72124 * 18 17 16 20 20 C 1.38285 * 120.07441 * 0.55240 * 19 18 17 21 21 C 1.38285 * 120.13906 * 359.71966 * 20 19 18 22 22 C 1.38100 * 120.07260 * 0.02562 * 21 20 19 23 23 C 1.35364 * 119.88680 * 150.80662 * 9 7 2 24 24 O 1.21811 * 121.23403 * 359.97438 * 23 9 7 25 25 H 0.96997 * 120.00856 * 359.97438 * 1 2 3 26 26 H 1.08001 * 118.50545 * 359.97422 * 10 9 7 27 27 H 1.08001 * 125.80071 * 179.73933 * 14 13 12 28 28 H 1.07997 * 120.03517 * 359.97438 * 18 17 16 29 29 H 1.08005 * 119.96469 * 180.27521 * 19 18 17 30 30 H 1.08004 * 119.93175 * 179.75190 * 20 19 18 31 31 H 1.08000 * 119.96620 * 180.02562 * 21 20 19 32 32 H 1.08006 * 120.03658 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.7066 1.3465 -0.0006 5 1 1.8879 2.3964 -1.2125 6 1 1.8878 2.3965 1.2125 7 6 2.0080 -1.2041 0.0005 8 1 3.0509 -1.2256 -0.2795 9 7 1.3694 -2.3648 0.3567 10 6 0.3311 -2.3251 1.2354 11 7 -0.3165 -3.3876 1.6151 12 6 -0.0018 -4.6097 1.1601 13 6 1.0571 -4.7504 0.2483 14 6 1.1662 -6.1199 -0.0576 15 7 0.2503 -6.7655 0.6117 16 7 -0.4940 -5.8604 1.3791 17 6 -1.5606 -6.1858 2.2258 18 6 -1.7499 -5.4824 3.4084 19 6 -2.8063 -5.8020 4.2385 20 6 -3.6684 -6.8286 3.8991 21 6 -3.4793 -7.5346 2.7252 22 6 -2.4280 -7.2165 1.8881 23 6 1.7739 -3.5454 -0.1674 24 8 2.7006 -3.6019 -0.9561 25 1 -0.4851 0.8399 0.0004 26 1 0.0316 -1.3681 1.6365 27 1 1.8831 -6.5610 -0.7342 28 1 -1.0741 -4.6837 3.6764 29 1 -2.9567 -5.2525 5.1561 30 1 -4.4914 -7.0792 4.5520 31 1 -4.1545 -8.3355 2.4627 32 1 -2.2810 -7.7680 0.9712 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000158833.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:19 Heat of formation + Delta-G solvation = 101.103115 kcal Electronic energy + Delta-G solvation = -20932.371178 eV Core-core repulsion = 17667.023610 eV Total energy + Delta-G solvation = -3265.347568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33604 -39.51596 -38.44624 -36.33527 -34.36090 -33.12449 -31.91583 -30.85990 -28.89309 -28.74097 -26.02573 -23.72346 -23.08715 -22.78560 -21.71610 -20.07144 -18.90594 -18.16369 -16.86469 -16.45870 -15.90333 -15.55584 -15.26108 -14.69987 -14.52240 -14.00733 -13.87483 -13.50548 -13.43776 -13.29349 -12.96665 -12.51758 -12.23557 -11.78464 -11.56362 -11.47188 -11.25220 -11.05651 -10.69356 -10.60166 -10.02927 -9.72288 -9.17485 -9.14700 -8.88669 -8.86069 -7.91008 -7.52372 -7.06301 -4.73280 1.07119 1.47356 1.88818 2.55171 2.59972 2.91064 2.95347 3.03004 3.21955 3.61654 3.88192 4.15064 4.23969 4.77608 4.86526 4.95164 5.02141 5.12688 5.22609 5.48602 5.55629 5.60733 5.82472 5.85451 6.04791 6.11910 6.42509 6.51730 6.54930 6.58005 6.88916 6.91970 6.97490 7.28127 7.54506 7.80887 8.01751 8.18654 8.47583 8.96322 9.15152 9.94941 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.004992 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.654357 B = 5608.036482 C = 6547.881502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.047 3.953 3 Si 0.946 3.054 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.340 4.340 8 H 0.122 0.878 9 N -0.354 5.354 10 C 0.401 3.599 11 N -0.579 5.579 12 C 0.350 3.650 13 C -0.367 4.367 14 C 0.137 3.863 15 N -0.298 5.298 16 N -0.337 5.337 17 C 0.177 3.823 18 C -0.116 4.116 19 C -0.101 4.101 20 C -0.135 4.135 21 C -0.107 4.107 22 C -0.122 4.122 23 C 0.538 3.462 24 O -0.546 6.546 25 H 0.290 0.710 26 H 0.210 0.790 27 H 0.191 0.809 28 H 0.137 0.863 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 -5.487 7.050 10.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.163 4.163 3 Si 0.769 3.231 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.139 0.861 9 N -0.053 5.053 10 C 0.119 3.881 11 N -0.312 5.312 12 C 0.112 3.888 13 C -0.384 4.384 14 C -0.055 4.055 15 N -0.114 5.114 16 N -0.118 5.118 17 C 0.085 3.915 18 C -0.137 4.137 19 C -0.120 4.120 20 C -0.154 4.154 21 C -0.126 4.126 22 C -0.142 4.142 23 C 0.335 3.665 24 O -0.425 6.425 25 H 0.101 0.899 26 H 0.226 0.774 27 H 0.207 0.793 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.265 -6.542 7.264 11.611 hybrid contribution 1.059 1.459 -0.957 2.041 sum -5.207 -5.084 6.306 9.629 Atomic orbital electron populations 1.69740 1.06516 1.30258 1.41424 1.25715 0.95692 1.01251 0.93690 0.85550 0.80085 0.78767 0.78696 1.18289 1.19788 1.19411 1.20214 0.97234 0.81870 1.47457 0.86082 1.42780 1.24823 1.08455 1.29269 1.24861 0.83277 0.96600 0.83399 1.67337 1.34047 0.95064 1.34728 1.19174 0.90499 0.86675 0.92402 1.21072 1.08005 0.95455 1.13825 1.23425 0.95383 0.90752 0.95927 1.77156 1.08847 1.14077 1.11320 1.45158 1.27128 1.02249 1.37301 1.17472 0.87012 0.97477 0.89587 1.21152 0.99696 1.00755 0.92085 1.20962 0.94271 0.97333 0.99406 1.21137 1.00010 0.96842 0.97440 1.20948 0.97274 0.99867 0.94462 1.20967 0.94232 0.98187 1.00821 1.17643 0.84879 0.82457 0.81507 1.90703 1.30396 1.86075 1.35322 0.89932 0.77420 0.79268 0.84490 0.85416 0.85955 0.85650 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.65 11.20 55.50 0.62 -19.02 16 2 C 0.05 1.06 4.98 -17.49 -0.09 0.97 16 3 Si 0.95 17.34 29.59 -169.99 -5.03 12.31 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 6 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 7 C -0.34 -8.39 9.12 -14.86 -0.14 -8.53 16 8 H 0.12 3.04 7.62 -52.48 -0.40 2.65 16 9 N -0.35 -8.83 2.75 -64.02 -0.18 -9.00 16 10 C 0.40 9.20 10.25 -89.75 -0.92 8.28 16 11 N -0.58 -12.97 9.50 -13.28 -0.13 -13.09 16 12 C 0.35 7.93 7.52 -155.69 -1.17 6.76 16 13 C -0.37 -8.59 6.39 -104.90 -0.67 -9.26 16 14 C 0.14 2.76 12.04 -17.16 -0.21 2.55 16 15 N -0.30 -5.99 12.23 30.76 0.38 -5.61 16 16 N -0.34 -6.97 3.75 -9.92 -0.04 -7.00 16 17 C 0.18 3.17 6.40 -83.64 -0.54 2.64 16 18 C -0.12 -1.87 9.38 -39.39 -0.37 -2.24 16 19 C -0.10 -1.29 10.04 -39.61 -0.40 -1.68 16 20 C -0.14 -1.55 10.04 -39.55 -0.40 -1.95 16 21 C -0.11 -1.30 10.04 -39.61 -0.40 -1.70 16 22 C -0.12 -1.86 9.76 -39.39 -0.38 -2.25 16 23 C 0.54 13.87 7.61 -12.78 -0.10 13.77 16 24 O -0.55 -15.09 17.04 5.09 0.09 -15.00 16 25 H 0.29 6.12 8.31 -40.82 -0.34 5.78 16 26 H 0.21 4.55 6.14 -52.49 -0.32 4.23 16 27 H 0.19 3.16 8.06 -52.49 -0.42 2.73 16 28 H 0.14 2.33 7.21 -52.49 -0.38 1.95 16 29 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.94 8.06 -52.48 -0.42 1.51 16 LS Contribution 290.51 15.07 4.38 4.38 Total: -1.00 -28.94 290.51 -8.02 -36.97 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -2.35 Total: 7.71 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: -5.77 Total: 7.37 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.66 Total: -53.74 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.09 Total: -15.00 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.94 -8.02 -36.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000158833.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.072 kcal (2) G-P(sol) polarization free energy of solvation -28.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds