Wall clock time and date at job start Tue Mar 31 2020 02:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99780 * 2 1 4 4 C 1.46901 * 110.99918 * 123.94689 * 2 1 3 5 5 C 1.53006 * 109.47023 * 66.04825 * 4 2 1 6 6 H 1.08996 * 109.50459 * 304.91566 * 5 4 2 7 7 C 1.53096 * 109.54293 * 184.80386 * 5 4 2 8 8 N 1.47015 * 109.25535 * 183.19645 * 7 5 4 9 9 C 1.46905 * 110.99712 * 182.39224 * 8 7 5 10 10 C 1.52993 * 109.47028 * 52.45228 * 9 8 7 11 11 H 1.09000 * 109.47295 * 302.20657 * 10 9 8 12 12 C 1.47201 * 109.47271 * 62.20742 * 10 9 8 13 13 N 6.80729 * 67.74295 * 138.57802 * 2 1 3 14 14 C 1.53008 * 109.47045 * 182.20348 * 10 9 8 15 15 C 1.50697 * 109.47151 * 174.99976 * 14 10 9 16 16 H 1.08001 * 119.99739 * 0.02562 * 15 14 10 17 17 C 1.37871 * 119.99855 * 179.72486 * 15 14 10 18 18 N 1.31511 * 120.00375 * 0.28234 * 17 15 14 19 19 Si 1.86799 * 119.99873 * 180.27600 * 17 15 14 20 20 H 1.48503 * 109.47389 * 60.00216 * 19 17 15 21 21 H 1.48506 * 109.47374 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47328 * 299.99907 * 19 17 15 23 23 C 1.47018 * 110.75229 * 58.61712 * 8 7 5 24 24 C 1.53097 * 109.25727 * 301.38152 * 23 8 7 25 25 O 1.43010 * 109.25997 * 56.85136 * 24 23 8 26 26 H 1.09000 * 109.47120 * 296.04599 * 1 2 3 27 27 H 1.09004 * 109.46935 * 56.05060 * 1 2 3 28 28 H 1.09003 * 109.46678 * 176.05227 * 1 2 3 29 29 H 1.08999 * 109.46881 * 183.95411 * 3 2 1 30 30 H 1.08997 * 109.46899 * 303.94929 * 3 2 1 31 31 H 1.09003 * 109.47580 * 63.95188 * 3 2 1 32 32 H 1.08998 * 109.47391 * 306.05010 * 4 2 1 33 33 H 1.08996 * 109.47138 * 186.04439 * 4 2 1 34 34 H 1.08993 * 109.50767 * 63.25968 * 7 5 4 35 35 H 1.08998 * 109.50390 * 303.12993 * 7 5 4 36 36 H 1.09001 * 109.46841 * 292.45312 * 9 8 7 37 37 H 1.08999 * 109.46724 * 172.45554 * 9 8 7 38 38 H 1.09001 * 109.46483 * 55.00227 * 14 10 9 39 39 H 1.08998 * 109.47086 * 295.00152 * 14 10 9 40 40 H 0.96998 * 120.00454 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.50605 * 61.31930 * 23 8 7 42 42 H 1.09004 * 109.50417 * 181.40306 * 23 8 7 43 43 H 1.08994 * 109.50814 * 176.78788 * 24 23 8 44 44 H 1.09003 * 109.50468 * 296.87369 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7658 1.1377 5 6 1.6315 -2.2426 0.9706 6 1 0.5532 -2.3396 0.8449 7 6 2.0739 -3.0227 2.2113 8 7 1.7909 -4.4515 2.0121 9 6 2.1493 -5.2304 3.2050 10 6 1.4825 -4.6136 4.4361 11 1 1.7935 -3.5735 4.5350 12 6 0.0196 -4.6760 4.2849 13 7 -1.1093 -4.7242 4.1681 14 6 1.8996 -5.3917 5.6858 15 6 1.3429 -4.7118 6.9100 16 1 0.7504 -3.8147 6.8071 17 6 1.5847 -5.2385 8.1610 18 7 2.3059 -6.3311 8.2863 19 14 0.8882 -4.4001 9.6780 20 1 -0.5935 -4.3609 9.5856 21 1 1.2880 -5.1587 10.8905 22 1 1.4156 -3.0146 9.7640 23 6 2.4884 -4.9597 0.8219 24 6 2.0418 -4.1601 -0.4049 25 8 2.2959 -2.7708 -0.1806 26 1 -0.3633 0.4512 0.9233 27 1 -0.3633 0.5739 -0.8525 28 1 -0.3633 -1.0253 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8525 31 1 1.7044 1.8724 0.9233 32 1 1.5611 -0.3871 2.0628 33 1 3.0797 -0.6610 1.1757 34 1 1.5275 -2.6614 3.0824 35 1 3.1434 -2.8818 2.3676 36 1 3.2315 -5.2197 3.3343 37 1 1.8080 -6.2584 3.0836 38 1 2.9874 -5.4207 5.7493 39 1 1.5118 -6.4086 5.6268 40 1 2.4757 -6.7019 9.1664 41 1 3.5644 -4.8498 0.9560 42 1 2.2450 -6.0126 0.6793 43 1 2.5983 -4.4952 -1.2801 44 1 0.9754 -4.3136 -0.5709 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106785921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:36 Heat of formation + Delta-G solvation = -10.972378 kcal Electronic energy + Delta-G solvation = -22622.403774 eV Core-core repulsion = 19381.979428 eV Total energy + Delta-G solvation = -3240.424346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.89663 -37.61548 -36.79016 -35.08420 -33.55228 -32.01262 -31.65670 -28.49412 -27.76643 -26.96516 -25.67188 -23.47598 -22.82854 -21.67902 -21.07620 -20.36871 -16.88503 -16.72541 -16.47686 -16.09346 -15.66800 -15.24764 -15.01638 -14.88359 -14.64476 -14.40421 -13.91566 -13.74446 -13.27950 -12.81661 -12.60151 -12.39255 -12.33879 -12.16075 -12.05979 -11.90857 -11.75418 -11.69510 -11.41037 -11.23328 -11.14824 -11.07468 -10.66286 -10.60587 -10.41572 -10.15835 -9.63709 -9.52491 -9.24023 -8.49517 -8.48841 -8.28345 -6.12955 -4.16645 3.28276 3.32962 3.36246 3.58441 3.67213 3.74912 3.77959 3.97726 4.37977 4.77815 4.84148 4.89213 4.96067 5.01225 5.05399 5.18584 5.19773 5.25118 5.28143 5.29453 5.45656 5.49250 5.50678 5.54984 5.61555 5.67491 5.69920 5.76901 5.80148 5.88604 5.94323 6.03688 6.32018 6.42487 6.80333 6.84118 7.01788 7.04360 7.25698 7.37841 7.47927 7.81454 8.18761 8.51888 8.87541 9.49039 10.97904 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018810 B = 0.004016 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.208745 B = 6970.428618 C = 7730.175044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.025 3.975 4 C 0.061 3.939 5 C 0.100 3.900 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.539 5.539 9 C 0.063 3.937 10 C 0.005 3.995 11 H 0.100 0.900 12 C 0.253 3.747 13 N -0.475 5.475 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.018 3.982 24 C 0.064 3.936 25 O -0.367 6.367 26 H 0.026 0.974 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.264 0.736 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 9.251 -16.912 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.262 5.262 3 C -0.123 4.123 4 C -0.067 4.067 5 C 0.041 3.959 6 H 0.084 0.916 7 C -0.112 4.112 8 N -0.264 5.264 9 C -0.065 4.065 10 C -0.017 4.017 11 H 0.118 0.882 12 C -0.064 4.064 13 N -0.152 5.152 14 C -0.006 4.006 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.138 4.138 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.111 4.111 24 C -0.013 4.013 25 O -0.285 6.285 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.286 8.886 -17.590 19.749 hybrid contribution 0.485 0.622 2.140 2.280 sum 1.771 9.508 -15.450 18.227 Atomic orbital electron populations 1.22470 0.87452 1.02556 1.00379 1.61905 1.07857 1.13458 1.42979 1.22379 1.00863 0.88712 1.00358 1.22134 1.01265 0.91608 0.91725 1.22131 0.96789 0.91889 0.85082 0.91617 1.22860 1.00367 0.89039 0.98948 1.62274 1.57885 1.02372 1.03850 1.22278 0.98682 0.97946 0.87628 1.19337 0.81992 1.03125 0.97236 0.88213 1.28820 0.94847 0.92155 0.90544 1.80984 1.13176 1.09742 1.11301 1.19165 0.97750 0.95336 0.88368 1.21082 1.33391 1.11144 0.91017 0.92605 1.24940 0.94930 0.94853 0.99122 1.69921 1.38465 1.20589 1.23982 0.86657 0.79662 0.79610 0.82173 1.20199 1.21134 1.20051 1.22782 0.96883 1.00113 0.91281 1.22609 1.00684 0.81484 0.96501 1.88051 1.71392 1.23284 1.45785 0.95593 0.91439 0.91070 0.91290 0.91432 0.95736 0.92970 0.89771 0.89097 0.93383 0.92735 0.89796 0.94431 0.95477 0.92684 0.93790 0.89707 0.88703 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.33 60.07 0.56 0.75 16 2 N -0.54 -5.84 4.97 -251.25 -1.25 -7.09 16 3 C 0.03 0.22 9.57 60.06 0.57 0.79 16 4 C 0.06 0.67 4.63 -3.82 -0.02 0.65 16 5 C 0.10 1.23 2.76 -26.68 -0.07 1.15 16 6 H 0.07 0.88 6.34 -51.93 -0.33 0.55 16 7 C 0.02 0.21 4.43 -3.71 -0.02 0.20 16 8 N -0.54 -7.39 4.46 -234.31 -1.04 -8.43 16 9 C 0.06 0.94 4.52 -3.83 -0.02 0.92 16 10 C 0.00 0.09 1.76 -93.41 -0.16 -0.07 16 11 H 0.10 1.70 6.13 -51.93 -0.32 1.38 16 12 C 0.25 5.23 13.48 -20.76 -0.28 4.95 16 13 N -0.48 -10.66 18.54 42.15 0.78 -9.88 16 14 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -13.92 8.60 -34.44 -0.30 -14.22 16 16 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 19 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.02 0.20 5.66 -3.71 -0.02 0.18 16 24 C 0.06 0.71 7.01 37.21 0.26 0.97 16 25 O -0.37 -4.76 10.42 -35.23 -0.37 -5.12 16 26 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.07 0.76 6.37 -51.93 -0.33 0.42 16 29 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 30 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 31 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.05 0.55 8.12 -51.93 -0.42 0.12 16 33 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 34 H 0.09 1.23 5.92 -51.93 -0.31 0.92 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -30.54 354.92 -8.10 -38.64 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -7.58 Total: -3.52 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 0.29 Total: -1.46 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.78 Total: -49.98 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.37 Total: -5.12 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.54 -8.10 -38.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106785921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.665 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds