Wall clock time and date at job start Tue Mar 31 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.54106 * 2 1 4 4 C 1.53041 * 109.50491 * 239.89915 * 2 1 3 5 5 N 1.46847 * 109.51486 * 180.87832 * 4 2 1 6 6 C 1.46899 * 110.99299 * 185.84807 * 5 4 2 7 7 C 1.50696 * 109.47180 * 301.84381 * 6 5 4 8 8 H 1.08004 * 120.00207 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00335 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99896 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00163 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47086 * 60.00019 * 11 9 7 13 13 H 1.48499 * 109.46896 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47363 * 299.99762 * 11 9 7 15 15 C 1.46847 * 111.20163 * 61.75514 * 5 4 2 16 16 C 1.53044 * 109.51335 * 298.24410 * 15 5 4 17 17 C 1.53119 * 109.27589 * 59.18419 * 16 15 5 18 18 H 1.08993 * 109.52284 * 62.25342 * 17 16 15 19 19 N 1.46906 * 109.51848 * 182.44058 * 17 16 15 20 20 C 1.46951 * 110.99854 * 58.79654 * 19 17 16 21 21 C 1.53054 * 109.36151 * 176.80996 * 20 19 17 22 22 N 1.46961 * 109.36193 * 58.40490 * 21 20 19 23 23 C 1.46906 * 110.99815 * 176.80948 * 22 21 20 24 24 C 1.46951 * 110.88023 * 300.67396 * 22 21 20 25 25 C 1.46961 * 110.99815 * 294.99961 * 19 17 16 26 26 H 1.08995 * 109.46970 * 299.90520 * 1 2 3 27 27 H 1.08998 * 109.46590 * 59.90698 * 1 2 3 28 28 H 1.09004 * 109.46555 * 179.90119 * 1 2 3 29 29 H 1.09005 * 109.45785 * 300.89336 * 4 2 1 30 30 H 1.08994 * 109.46278 * 60.86644 * 4 2 1 31 31 H 1.09004 * 109.46859 * 61.84029 * 6 5 4 32 32 H 1.08996 * 109.47621 * 181.83654 * 6 5 4 33 33 H 0.96997 * 120.00157 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46448 * 178.23132 * 15 5 4 35 35 H 1.08994 * 109.45958 * 58.25497 * 15 5 4 36 36 H 1.09000 * 109.49745 * 179.12223 * 16 15 5 37 37 H 1.08996 * 109.50070 * 299.23917 * 16 15 5 38 38 H 1.09000 * 109.49598 * 296.77899 * 20 19 17 39 39 H 1.08996 * 109.49239 * 56.84604 * 20 19 17 40 40 H 1.08997 * 109.48967 * 298.43667 * 21 20 19 41 41 H 1.09009 * 109.50781 * 178.37663 * 21 20 19 42 42 H 1.09001 * 109.47128 * 183.79998 * 23 22 21 43 43 H 1.08996 * 109.47236 * 303.79714 * 23 22 21 44 44 H 1.09003 * 109.47150 * 63.79849 * 23 22 21 45 45 H 1.09000 * 109.49073 * 299.35654 * 24 22 21 46 46 H 1.08998 * 109.48993 * 179.28498 * 24 22 21 47 47 H 1.09001 * 109.48643 * 303.15404 * 25 19 17 48 48 H 1.08997 * 109.49151 * 63.19798 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0410 -0.7235 -1.2480 5 7 3.5093 -0.7420 -1.2377 6 6 4.0374 -1.3056 -2.4872 7 6 3.5011 -2.7014 -2.6748 8 1 2.8350 -3.1274 -1.9391 9 6 3.8617 -3.4350 -3.7851 10 7 4.6732 -2.9165 -4.6808 11 14 3.1976 -5.1655 -4.0173 12 1 1.7146 -5.1220 -4.0821 13 1 3.7313 -5.7351 -5.2805 14 1 3.6183 -6.0147 -2.8741 15 6 4.0230 -1.4730 -0.0723 16 6 3.5712 -0.7719 1.2109 17 6 2.0412 -0.7238 1.2487 18 1 1.6453 -1.7391 1.2691 19 7 1.6024 -0.0003 2.4496 20 6 2.1402 1.3672 2.4664 21 6 1.5971 2.1111 3.6888 22 7 1.9754 1.3845 4.9090 23 6 1.5366 2.1080 6.1099 24 6 1.4376 0.0170 4.8922 25 6 1.9807 -0.7268 3.6698 26 1 -0.3633 0.5123 0.8908 27 1 -0.3632 0.5153 -0.8892 28 1 -0.3632 -1.0277 -0.0018 29 1 1.6648 -1.7466 -1.2543 30 1 1.6906 -0.2024 -2.1389 31 1 3.7284 -0.6819 -3.3262 32 1 5.1258 -1.3378 -2.4400 33 1 4.9266 -3.4324 -5.4621 34 1 5.1121 -1.4963 -0.1092 35 1 3.6374 -2.4924 -0.0842 36 1 3.9395 -1.3234 2.0759 37 1 3.9678 0.2432 1.2298 38 1 3.2283 1.3296 2.5174 39 1 1.8362 1.8887 1.5588 40 1 0.5108 2.1725 3.6241 41 1 2.0172 3.1165 3.7194 42 1 1.8876 1.5836 6.9986 43 1 1.9487 3.1170 6.0970 44 1 0.4479 2.1603 6.1251 45 1 0.3495 0.0547 4.8412 46 1 1.7417 -0.5045 5.7998 47 1 1.5603 -1.7321 3.6395 48 1 3.0670 -0.7887 3.7342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343981872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:23 Heat of formation + Delta-G solvation = 12.038773 kcal Electronic energy + Delta-G solvation = -23801.912433 eV Core-core repulsion = 20698.319021 eV Total energy + Delta-G solvation = -3103.593413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.02668 -38.04328 -35.51692 -33.16716 -32.21518 -30.96920 -30.79068 -28.10616 -26.54368 -25.52204 -24.18931 -23.79274 -22.81285 -21.85624 -20.38903 -19.83618 -18.61692 -16.45568 -16.35996 -15.29913 -15.05299 -14.93643 -14.90607 -14.58421 -14.49439 -14.07741 -13.75456 -13.35239 -13.12708 -12.80676 -12.60481 -12.30826 -12.11606 -11.96917 -11.78855 -11.69761 -11.40119 -11.32730 -11.09790 -10.99915 -10.90525 -10.86190 -10.42781 -10.34614 -10.17294 -10.06116 -9.93694 -9.70387 -9.42027 -8.54837 -8.42023 -8.05098 -7.13320 -6.01423 -4.10866 3.28528 3.33625 3.35799 3.76672 3.97514 4.40919 4.78857 4.84853 4.93351 5.04452 5.16232 5.18055 5.27329 5.29747 5.31890 5.38893 5.40680 5.46766 5.56801 5.61392 5.67902 5.69935 5.83821 5.88932 5.91366 5.97427 6.00834 6.14329 6.21319 6.25401 6.33380 6.46568 6.56469 6.61336 6.68387 6.80066 6.82219 6.84729 6.93803 7.22190 7.24989 7.32914 7.53533 7.91215 8.09990 8.31014 8.35494 8.99724 9.55917 11.03378 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.003786 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.062307 B = 7393.128357 C = 7451.360995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 H 0.071 0.929 4 C 0.071 3.929 5 N -0.542 5.542 6 C 0.188 3.812 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.069 3.931 16 C -0.147 4.147 17 C 0.093 3.907 18 H 0.077 0.923 19 N -0.530 5.530 20 C 0.051 3.949 21 C 0.058 3.942 22 N -0.546 5.546 23 C 0.026 3.974 24 C 0.059 3.941 25 C 0.054 3.946 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.029 0.971 33 H 0.263 0.737 34 H 0.062 0.938 35 H 0.035 0.965 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.024 0.976 45 H 0.040 0.960 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.145 8.314 18.182 21.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.058 4.058 5 N -0.266 5.266 6 C 0.063 3.937 7 C -0.588 4.588 8 H 0.074 0.926 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.716 3.284 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.203 1.203 15 C -0.060 4.060 16 C -0.186 4.186 17 C -0.015 4.015 18 H 0.095 0.905 19 N -0.254 5.254 20 C -0.077 4.077 21 C -0.070 4.070 22 N -0.271 5.271 23 C -0.122 4.122 24 C -0.069 4.069 25 C -0.075 4.075 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.058 0.942 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.892 8.769 18.044 21.213 hybrid contribution -0.540 -1.969 -0.305 2.065 sum -7.431 6.799 17.739 20.399 Atomic orbital electron populations 1.21662 0.95168 1.01405 1.01010 1.21270 0.95183 0.99805 0.93756 0.91030 1.21892 0.89353 0.98780 0.95771 1.62435 1.06762 1.53300 1.04124 1.19718 0.95531 0.92757 0.85737 1.21729 1.29307 1.00860 1.06919 0.92585 1.24961 0.94903 0.98042 0.95866 1.69934 1.34350 1.37475 1.11241 0.86722 0.79347 0.84906 0.77444 1.20244 1.21197 1.20309 1.21756 0.99297 0.95446 0.89542 1.22277 0.96737 1.01522 0.98073 1.21782 0.93269 0.97381 0.89071 0.90504 1.62422 1.58906 1.02239 1.01809 1.22221 0.98243 0.89816 0.97424 1.22196 0.98601 0.96988 0.89233 1.62157 1.59717 1.02752 1.02442 1.22332 0.97982 0.99033 0.92887 1.22156 0.97519 0.89120 0.98117 1.22138 0.99137 0.97033 0.89166 0.92186 0.93445 0.93322 0.94379 0.91621 0.95128 0.95287 0.92772 0.91937 0.94684 0.92601 0.91436 0.93464 0.89755 0.94238 0.90625 0.91531 0.91484 0.95772 0.94202 0.90689 0.90561 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.07 37.16 0.34 -1.52 16 2 C -0.08 -1.25 2.12 -90.54 -0.19 -1.44 16 3 H 0.07 1.12 6.24 -51.93 -0.32 0.80 16 4 C 0.07 1.38 4.29 -3.83 -0.02 1.37 16 5 N -0.54 -11.64 4.86 -236.11 -1.15 -12.79 16 6 C 0.19 4.88 5.13 -4.98 -0.03 4.85 16 7 C -0.55 -15.11 7.74 -34.44 -0.27 -15.37 16 8 H 0.06 1.53 5.84 -52.48 -0.31 1.22 16 9 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 11 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 C 0.07 1.35 5.14 -3.83 -0.02 1.33 16 16 C -0.15 -2.30 4.68 -26.65 -0.12 -2.42 16 17 C 0.09 1.36 1.72 -67.59 -0.12 1.25 16 18 H 0.08 1.21 8.12 -51.93 -0.42 0.79 16 19 N -0.53 -6.72 4.05 -226.34 -0.92 -7.63 16 20 C 0.05 0.61 4.82 -3.77 -0.02 0.60 16 21 C 0.06 0.61 5.62 -3.76 -0.02 0.59 16 22 N -0.55 -5.72 4.97 -242.74 -1.21 -6.93 16 23 C 0.03 0.21 9.60 60.07 0.58 0.79 16 24 C 0.06 0.60 5.62 -3.77 -0.02 0.58 16 25 C 0.05 0.62 5.25 -3.76 -0.02 0.60 16 26 H 0.06 0.78 7.68 -51.93 -0.40 0.38 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.04 0.81 6.57 -51.93 -0.34 0.47 16 30 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 35 H 0.03 0.74 7.03 -51.93 -0.37 0.38 16 36 H 0.06 0.82 6.73 -51.93 -0.35 0.47 16 37 H 0.07 1.08 6.34 -51.93 -0.33 0.75 16 38 H 0.05 0.63 6.42 -51.93 -0.33 0.29 16 39 H 0.08 1.03 6.12 -51.93 -0.32 0.71 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.71 8.13 -51.92 -0.42 0.29 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 44 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 48 H 0.05 0.57 6.66 -51.93 -0.35 0.22 16 LS Contribution 350.09 15.07 5.28 5.28 Total: -1.00 -28.64 350.09 -11.18 -39.81 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -8.87 Total: -1.53 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -0.02 Total: -7.08 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -2.53 Total: -52.96 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.64 -11.18 -39.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343981872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.852 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds