Wall clock time and date at job start Tue Mar 31 2020 02:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.54106 * 2 1 4 4 C 1.53041 * 109.50491 * 239.89915 * 2 1 3 5 5 N 1.46847 * 109.51486 * 180.87832 * 4 2 1 6 6 C 1.46899 * 110.99299 * 185.84807 * 5 4 2 7 7 C 1.50696 * 109.47180 * 301.84381 * 6 5 4 8 8 H 1.08004 * 120.00207 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00335 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99896 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00163 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47086 * 60.00019 * 11 9 7 13 13 H 1.48499 * 109.46896 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47363 * 299.99762 * 11 9 7 15 15 C 1.46847 * 111.20163 * 61.75514 * 5 4 2 16 16 C 1.53044 * 109.51335 * 298.24410 * 15 5 4 17 17 C 1.53119 * 109.27589 * 59.18419 * 16 15 5 18 18 H 1.08993 * 109.52284 * 62.25342 * 17 16 15 19 19 N 1.46906 * 109.51848 * 182.44058 * 17 16 15 20 20 C 1.46951 * 110.99854 * 58.79654 * 19 17 16 21 21 C 1.53054 * 109.36151 * 176.80996 * 20 19 17 22 22 N 1.46961 * 109.36193 * 58.40490 * 21 20 19 23 23 C 1.46906 * 110.99815 * 176.80948 * 22 21 20 24 24 C 1.46951 * 110.88023 * 300.67396 * 22 21 20 25 25 C 1.46961 * 110.99815 * 294.99961 * 19 17 16 26 26 H 1.08995 * 109.46970 * 299.90520 * 1 2 3 27 27 H 1.08998 * 109.46590 * 59.90698 * 1 2 3 28 28 H 1.09004 * 109.46555 * 179.90119 * 1 2 3 29 29 H 1.09005 * 109.45785 * 300.89336 * 4 2 1 30 30 H 1.08994 * 109.46278 * 60.86644 * 4 2 1 31 31 H 1.09004 * 109.46859 * 61.84029 * 6 5 4 32 32 H 1.08996 * 109.47621 * 181.83654 * 6 5 4 33 33 H 0.96997 * 120.00157 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46448 * 178.23132 * 15 5 4 35 35 H 1.08994 * 109.45958 * 58.25497 * 15 5 4 36 36 H 1.09000 * 109.49745 * 179.12223 * 16 15 5 37 37 H 1.08996 * 109.50070 * 299.23917 * 16 15 5 38 38 H 1.09000 * 109.49598 * 296.77899 * 20 19 17 39 39 H 1.08996 * 109.49239 * 56.84604 * 20 19 17 40 40 H 1.08997 * 109.48967 * 298.43667 * 21 20 19 41 41 H 1.09009 * 109.50781 * 178.37663 * 21 20 19 42 42 H 1.09001 * 109.47128 * 183.79998 * 23 22 21 43 43 H 1.08996 * 109.47236 * 303.79714 * 23 22 21 44 44 H 1.09003 * 109.47150 * 63.79849 * 23 22 21 45 45 H 1.09000 * 109.49073 * 299.35654 * 24 22 21 46 46 H 1.08998 * 109.48993 * 179.28498 * 24 22 21 47 47 H 1.09001 * 109.48643 * 303.15404 * 25 19 17 48 48 H 1.08997 * 109.49151 * 63.19798 * 25 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0410 -0.7235 -1.2480 5 7 3.5093 -0.7420 -1.2377 6 6 4.0374 -1.3056 -2.4872 7 6 3.5011 -2.7014 -2.6748 8 1 2.8350 -3.1274 -1.9391 9 6 3.8617 -3.4350 -3.7851 10 7 4.6732 -2.9165 -4.6808 11 14 3.1976 -5.1655 -4.0173 12 1 1.7146 -5.1220 -4.0821 13 1 3.7313 -5.7351 -5.2805 14 1 3.6183 -6.0147 -2.8741 15 6 4.0230 -1.4730 -0.0723 16 6 3.5712 -0.7719 1.2109 17 6 2.0412 -0.7238 1.2487 18 1 1.6453 -1.7391 1.2691 19 7 1.6024 -0.0003 2.4496 20 6 2.1402 1.3672 2.4664 21 6 1.5971 2.1111 3.6888 22 7 1.9754 1.3845 4.9090 23 6 1.5366 2.1080 6.1099 24 6 1.4376 0.0170 4.8922 25 6 1.9807 -0.7268 3.6698 26 1 -0.3633 0.5123 0.8908 27 1 -0.3632 0.5153 -0.8892 28 1 -0.3632 -1.0277 -0.0018 29 1 1.6648 -1.7466 -1.2543 30 1 1.6906 -0.2024 -2.1389 31 1 3.7284 -0.6819 -3.3262 32 1 5.1258 -1.3378 -2.4400 33 1 4.9266 -3.4324 -5.4621 34 1 5.1121 -1.4963 -0.1092 35 1 3.6374 -2.4924 -0.0842 36 1 3.9395 -1.3234 2.0759 37 1 3.9678 0.2432 1.2298 38 1 3.2283 1.3296 2.5174 39 1 1.8362 1.8887 1.5588 40 1 0.5108 2.1725 3.6241 41 1 2.0172 3.1165 3.7194 42 1 1.8876 1.5836 6.9986 43 1 1.9487 3.1170 6.0970 44 1 0.4479 2.1603 6.1251 45 1 0.3495 0.0547 4.8412 46 1 1.7417 -0.5045 5.7998 47 1 1.5603 -1.7321 3.6395 48 1 3.0670 -0.7887 3.7342 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343981872.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:23:22 Heat of formation + Delta-G solvation = -8.034635 kcal Electronic energy + Delta-G solvation = -23802.782882 eV Core-core repulsion = 20698.319021 eV Total energy + Delta-G solvation = -3104.463861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.216 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18420 -39.27026 -36.83678 -34.84967 -33.84772 -32.25215 -31.83771 -29.29907 -28.22843 -26.95370 -25.46836 -24.69822 -24.29146 -23.11954 -22.00710 -21.00584 -19.88317 -18.44794 -17.47420 -16.80374 -16.25600 -16.13566 -15.91933 -15.79685 -15.61948 -15.42103 -15.17865 -14.84337 -14.47241 -14.24525 -13.83354 -13.42302 -13.37695 -13.26833 -13.09116 -12.91144 -12.79229 -12.67744 -12.55319 -12.41995 -12.26126 -12.09957 -11.97110 -11.86651 -11.76062 -11.60755 -11.41854 -11.32963 -10.90657 -10.61724 -9.33563 -9.11238 -9.01238 -8.16184 -6.36784 1.35549 1.37051 1.45249 2.35885 2.91096 3.03553 3.07918 3.35756 3.75342 3.86853 4.02585 4.12677 4.17361 4.25014 4.30307 4.39661 4.42945 4.54155 4.55560 4.63268 4.66586 4.69618 4.72380 4.82044 4.86683 4.89138 4.93123 4.96250 5.02981 5.04012 5.04478 5.11531 5.14410 5.25817 5.27654 5.30294 5.32758 5.43231 5.54616 5.72858 6.00012 6.03886 6.05931 6.20816 6.23729 6.28419 6.56185 6.84452 7.34911 8.85768 Molecular weight = 281.22amu Principal moments of inertia in cm(-1) A = 0.033283 B = 0.003786 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.062307 B = 7393.128357 C = 7451.360995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.070 4.070 3 H 0.075 0.925 4 C 0.075 3.925 5 N -0.542 5.542 6 C 0.201 3.799 7 C -0.558 4.558 8 H 0.056 0.944 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.957 3.043 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.270 1.270 15 C 0.071 3.929 16 C -0.132 4.132 17 C 0.101 3.899 18 H 0.069 0.931 19 N -0.525 5.525 20 C 0.052 3.948 21 C 0.063 3.937 22 N -0.560 5.560 23 C 0.027 3.973 24 C 0.064 3.936 25 C 0.052 3.948 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.004 0.996 32 H 0.002 0.998 33 H 0.265 0.735 34 H 0.051 0.949 35 H 0.017 0.983 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.038 0.962 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 8.294 20.281 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 H 0.093 0.907 4 C -0.054 4.054 5 N -0.265 5.265 6 C 0.074 3.926 7 C -0.596 4.596 8 H 0.074 0.926 9 C -0.188 4.188 10 N -0.566 5.566 11 Si 0.782 3.218 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.195 1.195 15 C -0.058 4.058 16 C -0.171 4.171 17 C -0.007 4.007 18 H 0.087 0.913 19 N -0.248 5.248 20 C -0.076 4.076 21 C -0.065 4.065 22 N -0.285 5.285 23 C -0.121 4.121 24 C -0.064 4.064 25 C -0.076 4.076 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.022 0.978 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.035 0.965 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.289 8.762 20.175 23.506 hybrid contribution -0.070 -1.912 -0.935 2.130 sum -8.359 6.850 19.240 22.068 Atomic orbital electron populations 1.21585 0.93361 1.01459 1.01931 1.21153 0.96505 0.99257 0.92034 0.90701 1.21906 0.87769 0.98053 0.97664 1.62379 1.08179 1.52953 1.03018 1.19375 0.93895 0.92173 0.87110 1.21952 1.29176 1.01505 1.07006 0.92569 1.25832 0.95100 1.02347 0.95524 1.70060 1.35542 1.39222 1.11813 0.85627 0.78925 0.79668 0.77618 1.19384 1.20608 1.19506 1.21768 0.98625 0.94847 0.90549 1.22154 0.97734 1.01125 0.96117 1.21598 0.92149 0.97164 0.89826 0.91284 1.62427 1.58595 1.02464 1.01363 1.22236 0.97532 0.89476 0.98376 1.22140 0.98474 0.97271 0.88605 1.62174 1.60176 1.03041 1.03112 1.22368 0.98255 0.99300 0.92153 1.22121 0.97287 0.89140 0.97863 1.22208 0.98728 0.97511 0.89149 0.90780 0.92964 0.93684 0.96355 0.92796 0.97799 0.97980 0.92564 0.93005 0.96499 0.91070 0.91321 0.94643 0.89950 0.94278 0.89439 0.90660 0.90751 0.95421 0.94334 0.89233 0.90067 0.94473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.07 71.98 0.65 -2.59 16 2 C -0.07 -2.12 2.12 -10.74 -0.02 -2.14 16 3 H 0.07 2.25 6.24 -2.39 -0.01 2.23 16 4 C 0.07 2.96 4.29 86.33 0.37 3.33 16 5 N -0.54 -23.95 4.86 -900.92 -4.38 -28.33 16 6 C 0.20 10.91 5.13 85.56 0.44 11.34 16 7 C -0.56 -31.46 7.74 25.60 0.20 -31.26 16 8 H 0.06 3.12 5.84 -2.91 -0.02 3.10 16 9 C 0.01 0.65 5.46 84.65 0.46 1.11 16 10 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 11 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 C 0.07 2.83 5.14 86.33 0.44 3.28 16 16 C -0.13 -4.04 4.68 30.65 0.14 -3.89 16 17 C 0.10 2.85 1.72 44.99 0.08 2.92 16 18 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 19 N -0.53 -12.26 4.05 -870.00 -3.53 -15.78 16 20 C 0.05 1.14 4.82 86.31 0.42 1.56 16 21 C 0.06 1.17 5.62 86.31 0.49 1.65 16 22 N -0.56 -10.25 4.97 -921.91 -4.58 -14.82 16 23 C 0.03 0.37 9.60 127.69 1.23 1.59 16 24 C 0.06 1.14 5.62 86.31 0.49 1.62 16 25 C 0.05 1.09 5.25 86.31 0.45 1.55 16 26 H 0.07 1.73 7.68 -2.39 -0.02 1.72 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.02 0.79 6.57 -2.38 -0.02 0.78 16 30 H 0.05 2.22 8.12 -2.39 -0.02 2.20 16 31 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 32 H 0.00 0.12 8.06 -2.39 -0.02 0.10 16 33 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.05 2.13 8.06 -2.39 -0.02 2.12 16 35 H 0.02 0.73 7.03 -2.39 -0.02 0.71 16 36 H 0.07 1.98 6.73 -2.39 -0.02 1.97 16 37 H 0.07 2.12 6.34 -2.39 -0.02 2.10 16 38 H 0.04 0.88 6.42 -2.39 -0.02 0.86 16 39 H 0.08 1.85 6.12 -2.39 -0.01 1.84 16 40 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 1.41 8.13 -2.38 -0.02 1.39 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 44 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.08 1.62 8.12 -2.39 -0.02 1.60 16 48 H 0.04 0.85 6.66 -2.39 -0.02 0.83 16 Total: -1.00 -62.06 350.09 -3.44 -65.50 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 0.90 Total: 12.70 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.83 Total: -9.92 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -12.20 Total: -114.63 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -62.06 -3.44 -65.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343981872.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.465 kcal (2) G-P(sol) polarization free energy of solvation -62.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds