Wall clock time and date at job start Tue Mar 31 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48497 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47050 * 299.99765 * 3 2 1 6 6 H 1.48498 * 109.47220 * 59.99342 * 3 2 1 7 7 C 1.38948 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00143 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99686 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00129 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99575 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.46871 * 180.02562 * 12 10 9 14 14 C 1.34784 * 119.99741 * 180.02562 * 13 12 10 15 15 O 1.21281 * 120.00093 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99865 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47110 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.96998 * 119.99866 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99997 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.47308 * 59.99472 * 12 10 9 26 26 H 1.09000 * 109.46976 * 299.99617 * 12 10 9 27 27 H 0.96998 * 120.00681 * 359.97438 * 13 12 10 28 28 H 1.09000 * 109.47543 * 59.99570 * 16 14 13 29 29 H 1.09008 * 109.47338 * 300.00084 * 16 14 13 30 30 H 1.09000 * 109.46884 * 60.00335 * 17 16 14 31 31 H 1.09000 * 109.46955 * 299.99651 * 17 16 14 32 32 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 33 33 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 34 34 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1957 -5.9764 0.0016 14 6 1.7464 -7.2472 0.0017 15 8 0.5540 -7.4688 0.0018 16 6 2.7257 -8.3926 0.0016 17 6 1.9607 -9.7176 0.0023 18 6 2.9400 -10.8631 0.0016 19 6 3.4405 -11.4475 1.0913 20 6 4.3250 -12.4831 0.8436 21 6 4.5423 -12.7401 -0.4471 22 16 3.5919 -11.6389 -1.4359 23 1 -0.4850 0.8400 -0.0004 24 1 0.3533 -2.3907 0.0005 25 1 0.6167 -4.9209 -0.8885 26 1 0.6175 -4.9205 0.8914 27 1 3.1494 -5.7993 0.0012 28 1 3.3525 -8.3349 0.8915 29 1 3.3523 -8.3349 -0.8885 30 1 1.3337 -9.7756 -0.8874 31 1 1.3345 -9.7751 0.8926 32 1 3.1760 -11.1360 2.0909 33 1 4.8023 -13.0413 1.6355 34 1 5.1983 -13.5093 -0.8269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344120551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:16 Heat of formation + Delta-G solvation = -54.764134 kcal Electronic energy + Delta-G solvation = -18329.879636 eV Core-core repulsion = 15160.924358 eV Total energy + Delta-G solvation = -3168.955279 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69925 -38.31394 -37.95281 -34.51007 -33.81287 -33.67305 -31.40432 -29.40737 -27.55262 -25.24878 -24.23243 -22.58631 -20.13127 -19.57090 -19.44698 -18.12822 -17.59645 -16.78987 -15.87780 -15.67986 -15.57283 -15.27430 -14.52630 -14.49092 -14.06387 -13.52224 -13.46558 -13.30519 -12.92577 -12.42955 -12.29390 -12.23503 -12.04140 -11.85835 -11.65022 -11.22080 -11.15489 -10.86794 -10.42382 -10.34366 -9.78891 -9.66752 -8.86413 -8.82489 -8.70135 -8.65556 -8.12244 -6.53444 -3.95514 0.76272 1.41006 1.78692 2.51119 2.79146 3.08967 3.21001 3.26798 3.37826 3.71801 4.09830 4.54043 4.81465 4.82968 4.85722 4.92941 5.12438 5.15187 5.30958 5.34925 5.48766 5.63252 5.89382 5.90180 5.93890 5.95598 6.05172 6.07455 6.27724 6.65387 7.44439 7.77406 7.90257 8.39959 8.44305 9.02734 9.37209 9.84916 10.63508 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.048878 B = 0.002437 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.717964 B =11486.906177 C =11724.571725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.707 5.707 14 C 0.511 3.489 15 O -0.551 6.551 16 C -0.134 4.134 17 C -0.034 4.034 18 C -0.167 4.167 19 C -0.143 4.143 20 C -0.132 4.132 21 C -0.220 4.220 22 S 0.096 5.904 23 H 0.274 0.726 24 H 0.396 0.604 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.412 0.588 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -21.510 0.000 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.020 4.020 13 N -0.361 5.361 14 C 0.297 3.703 15 O -0.430 6.430 16 C -0.175 4.175 17 C -0.073 4.073 18 C -0.285 4.285 19 C -0.173 4.173 20 C -0.163 4.163 21 C -0.356 4.356 22 S 0.359 5.641 23 H 0.084 0.916 24 H 0.230 0.770 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.249 0.751 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.016 -21.271 -1.560 21.910 hybrid contribution 0.489 0.728 1.514 1.750 sum 5.505 -20.543 -0.045 21.268 Atomic orbital electron populations 1.69623 1.06022 1.28450 1.49363 1.25337 0.95679 0.99974 0.96788 0.85750 0.79678 0.80780 0.77841 1.19124 1.20594 1.20601 1.19782 0.93487 0.81982 1.48153 0.87617 1.41814 1.09499 1.04510 1.62588 1.19756 0.88297 0.85015 0.85607 1.90496 1.13715 1.86831 1.57377 1.20958 0.91936 0.85847 1.03232 1.45746 1.11643 1.04721 1.74016 1.20540 0.89633 0.83870 0.76265 1.90692 1.16882 1.84951 1.50456 1.21651 0.98395 0.92307 1.05138 1.19883 0.94399 0.88044 1.05002 1.24587 1.04966 1.03317 0.95584 1.20178 0.99743 0.97875 0.99505 1.20180 1.00394 0.99316 0.96402 1.25609 1.07212 1.05802 0.96937 1.84385 1.40773 1.29047 1.09892 0.91619 0.77028 0.89849 0.89850 0.75058 0.88423 0.88644 0.89832 0.88993 0.84183 0.84404 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.81 13.05 55.50 0.72 -23.09 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 8 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 9 N -0.55 -13.56 5.29 -10.96 -0.06 -13.62 16 10 C 0.43 9.73 7.85 -10.98 -0.09 9.64 16 11 O -0.60 -15.17 15.24 5.55 0.08 -15.08 16 12 C 0.11 1.96 6.15 -5.19 -0.03 1.93 16 13 N -0.71 -11.39 5.53 -61.47 -0.34 -11.73 16 14 C 0.51 7.57 7.83 -10.98 -0.09 7.48 16 15 O -0.55 -9.83 15.98 5.56 0.09 -9.74 16 16 C -0.13 -1.44 5.68 -27.89 -0.16 -1.60 16 17 C -0.03 -0.35 5.00 -27.88 -0.14 -0.49 16 18 C -0.17 -1.62 5.76 -36.00 -0.21 -1.83 16 19 C -0.14 -1.28 10.05 -41.21 -0.41 -1.70 16 20 C -0.13 -1.08 10.18 -41.21 -0.42 -1.50 16 21 C -0.22 -1.77 11.23 29.04 0.33 -1.44 16 22 S 0.10 0.87 23.33 -107.50 -2.51 -1.64 16 23 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 24 H 0.40 9.40 7.90 -40.82 -0.32 9.07 16 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.41 6.48 7.44 -40.82 -0.30 6.18 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 317.95 15.07 4.79 4.79 Total: -1.00 -31.04 317.95 -7.63 -38.68 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -3.94 Total: 13.34 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.46 Total: 2.67 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.33 Total: -48.43 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: 0.17 Total: -24.82 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.51 Total: -1.64 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.04 -7.63 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344120551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.087 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds