Wall clock time and date at job start Tue Mar 31 2020 03:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00198 * 2 1 4 4 H 1.48497 * 109.47471 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47050 * 299.99765 * 3 2 1 6 6 H 1.48498 * 109.47220 * 59.99342 * 3 2 1 7 7 C 1.38948 * 119.99810 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00143 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00151 * 0.02562 * 7 2 1 10 10 C 1.34780 * 119.99686 * 179.97438 * 9 7 2 11 11 O 1.21289 * 120.00129 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99575 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.46871 * 180.02562 * 12 10 9 14 14 C 1.34784 * 119.99741 * 180.02562 * 13 12 10 15 15 O 1.21281 * 120.00093 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.99865 * 179.97438 * 14 13 12 17 17 C 1.53000 * 109.47110 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.47116 * 179.97438 * 17 16 14 19 19 C 1.33391 * 125.19937 * 90.00083 * 18 17 16 20 20 C 1.38423 * 114.92045 * 179.97438 * 19 18 17 21 21 C 1.33390 * 114.91979 * 359.97438 * 20 19 18 22 22 S 1.75878 * 125.20693 * 269.69344 * 18 17 16 23 23 H 0.96998 * 119.99866 * 0.02562 * 1 2 3 24 24 H 0.97000 * 119.99997 * 359.97438 * 9 7 2 25 25 H 1.09000 * 109.47308 * 59.99472 * 12 10 9 26 26 H 1.09000 * 109.46976 * 299.99617 * 12 10 9 27 27 H 0.96998 * 120.00681 * 359.97438 * 13 12 10 28 28 H 1.09000 * 109.47543 * 59.99570 * 16 14 13 29 29 H 1.09008 * 109.47338 * 300.00084 * 16 14 13 30 30 H 1.09000 * 109.46884 * 60.00335 * 17 16 14 31 31 H 1.09000 * 109.46955 * 299.99651 * 17 16 14 32 32 H 1.07995 * 122.54106 * 359.95411 * 19 18 17 33 33 H 1.08001 * 122.53959 * 180.02562 * 20 19 18 34 34 H 1.07998 * 125.20163 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8893 2.3964 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2437 -4.8630 0.0011 13 7 2.1957 -5.9764 0.0016 14 6 1.7464 -7.2472 0.0017 15 8 0.5540 -7.4688 0.0018 16 6 2.7257 -8.3926 0.0016 17 6 1.9607 -9.7176 0.0023 18 6 2.9400 -10.8631 0.0016 19 6 3.4405 -11.4475 1.0913 20 6 4.3250 -12.4831 0.8436 21 6 4.5423 -12.7401 -0.4471 22 16 3.5919 -11.6389 -1.4359 23 1 -0.4850 0.8400 -0.0004 24 1 0.3533 -2.3907 0.0005 25 1 0.6167 -4.9209 -0.8885 26 1 0.6175 -4.9205 0.8914 27 1 3.1494 -5.7993 0.0012 28 1 3.3525 -8.3349 0.8915 29 1 3.3523 -8.3349 -0.8885 30 1 1.3337 -9.7756 -0.8874 31 1 1.3345 -9.7751 0.8926 32 1 3.1760 -11.1360 2.0909 33 1 4.8023 -13.0413 1.6355 34 1 5.1983 -13.5093 -0.8269 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344120551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:16 Heat of formation + Delta-G solvation = -75.760338 kcal Electronic energy + Delta-G solvation = -18330.790100 eV Core-core repulsion = 15160.924358 eV Total energy + Delta-G solvation = -3169.865742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.04287 -39.94985 -38.75396 -36.26779 -35.29626 -34.65792 -33.38160 -30.41719 -28.86517 -26.67644 -25.49660 -23.39131 -21.39889 -21.30740 -20.10543 -20.06225 -18.68401 -17.84187 -17.26607 -16.99774 -16.87119 -16.38527 -16.21130 -15.88093 -15.68927 -14.89193 -14.63754 -14.15469 -13.91954 -13.66876 -13.56308 -13.53042 -13.10930 -12.98486 -12.89594 -12.85990 -12.45431 -12.11502 -11.98593 -11.58720 -11.56701 -11.03726 -10.56987 -10.19904 -10.08651 -9.54259 -9.37263 -8.52026 -6.02261 0.10251 0.74770 1.14312 1.34626 1.42743 1.56749 1.59866 1.85392 1.90224 2.08566 2.32732 3.12464 3.15194 3.62207 3.97436 4.08921 4.14617 4.27362 4.32007 4.42535 4.45030 4.58343 4.69375 4.75175 4.90972 5.08464 5.27844 5.29864 5.38137 5.43336 5.63765 5.91153 6.45071 6.53832 7.02767 7.17278 7.43622 7.93486 8.65134 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.048878 B = 0.002437 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.717964 B =11486.906177 C =11724.571725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.561 5.561 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.709 5.709 14 C 0.513 3.487 15 O -0.582 6.582 16 C -0.124 4.124 17 C -0.027 4.027 18 C -0.184 4.184 19 C -0.143 4.143 20 C -0.142 4.142 21 C -0.216 4.216 22 S 0.077 5.923 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.415 0.585 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 -22.327 0.331 23.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.008 4.008 13 N -0.363 5.363 14 C 0.302 3.698 15 O -0.462 6.462 16 C -0.164 4.164 17 C -0.067 4.067 18 C -0.301 4.301 19 C -0.173 4.173 20 C -0.172 4.172 21 C -0.351 4.351 22 S 0.341 5.659 23 H 0.089 0.911 24 H 0.233 0.767 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.253 0.747 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.169 0.831 33 H 0.177 0.823 34 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.856 -22.110 -1.230 22.906 hybrid contribution 0.239 0.875 1.420 1.685 sum 6.095 -21.235 0.190 22.093 Atomic orbital electron populations 1.69686 1.07015 1.29584 1.49381 1.26142 0.96551 1.02729 0.95810 0.84804 0.78132 0.76692 0.78310 1.19406 1.19644 1.19629 1.19770 0.92947 0.83542 1.50280 0.89580 1.41872 1.09608 1.04677 1.63458 1.20459 0.88137 0.85959 0.83483 1.90472 1.15170 1.87557 1.58000 1.20772 0.91832 0.84047 1.04148 1.45795 1.11382 1.04702 1.74463 1.21209 0.89866 0.83986 0.74784 1.90681 1.18513 1.85263 1.51749 1.21661 0.97550 0.90465 1.06730 1.19754 0.94412 0.88256 1.04273 1.24497 1.05716 1.03765 0.96102 1.20445 0.99328 0.97716 0.99841 1.20453 1.00324 0.99283 0.97095 1.25936 1.06805 1.05646 0.96727 1.84442 1.41381 1.29804 1.10320 0.91068 0.76712 0.88923 0.88834 0.74724 0.86453 0.87204 0.90955 0.89449 0.83087 0.82268 0.79922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.58 13.05 21.66 0.28 -48.30 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 1.00 41.59 29.55 68.60 2.03 43.62 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.34 -18.45 9.68 84.04 0.81 -17.63 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -28.03 5.29 -306.98 -1.62 -29.66 16 10 C 0.43 19.75 7.85 87.66 0.69 20.44 16 11 O -0.62 -31.89 15.24 -3.06 -0.05 -31.94 16 12 C 0.12 4.29 6.15 85.63 0.53 4.82 16 13 N -0.71 -22.18 5.53 -466.79 -2.58 -24.76 16 14 C 0.51 14.66 7.83 87.65 0.69 15.35 16 15 O -0.58 -20.37 15.98 -3.03 -0.05 -20.42 16 16 C -0.12 -2.46 5.68 29.85 0.17 -2.29 16 17 C -0.03 -0.54 5.00 29.85 0.15 -0.39 16 18 C -0.18 -3.32 5.76 24.59 0.14 -3.18 16 19 C -0.14 -2.29 10.05 21.22 0.21 -2.07 16 20 C -0.14 -1.96 10.18 21.22 0.22 -1.75 16 21 C -0.22 -2.99 11.23 66.72 0.75 -2.24 16 22 S 0.08 1.31 23.33 -56.49 -1.32 -0.01 16 23 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 24 H 0.40 19.17 7.90 -92.71 -0.73 18.43 16 25 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.41 12.67 7.44 -92.71 -0.69 11.98 16 28 H 0.12 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.11 1.91 8.14 -2.38 -0.02 1.90 16 30 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -65.74 317.95 1.24 -64.50 By element: Atomic # 1 Polarization: 36.33 SS G_CDS: -0.28 Total: 36.05 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 4.82 Total: 10.91 kcal Atomic # 7 Polarization: -98.80 SS G_CDS: -3.92 Total: -102.72 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.10 Total: -52.36 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -1.32 Total: -0.01 kcal Total: -65.74 1.24 -64.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344120551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.259 kcal (2) G-P(sol) polarization free energy of solvation -65.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds