Wall clock time and date at job start Tue Mar 31 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99778 * 2 1 4 4 H 1.48496 * 109.47075 * 239.99935 * 3 2 1 5 5 H 1.48498 * 109.47065 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46818 * 120.00209 * 3 2 1 7 7 C 1.37882 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00363 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99744 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00234 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99837 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00303 * 180.02562 * 11 10 9 14 14 C 1.53000 * 109.47188 * 179.97438 * 13 11 10 15 15 N 1.46503 * 109.46978 * 179.97438 * 14 13 11 16 16 C 1.34770 * 119.99738 * 180.02562 * 15 14 13 17 17 O 1.21634 * 120.00291 * 359.97438 * 16 15 14 18 18 C 1.47191 * 119.99817 * 180.02562 * 16 15 14 19 19 C 1.44425 * 123.46449 * 180.02562 * 18 16 15 20 20 C 1.32766 * 113.08895 * 179.97438 * 19 18 16 21 21 S 1.75505 * 110.57315 * 359.74176 * 20 19 18 22 22 C 1.36014 * 123.46276 * 0.02562 * 18 16 15 23 23 H 0.96993 * 120.00289 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46996 * 60.00229 * 9 7 2 25 25 H 1.09003 * 109.47072 * 300.00497 * 9 7 2 26 26 H 0.96998 * 119.99960 * 0.02562 * 10 9 7 27 27 H 1.08997 * 109.47293 * 59.99474 * 13 11 10 28 28 H 1.09001 * 109.46582 * 300.00088 * 13 11 10 29 29 H 1.09005 * 109.47116 * 59.99933 * 14 13 11 30 30 H 1.08998 * 109.47094 * 299.99680 * 14 13 11 31 31 H 0.97004 * 119.99641 * 0.02562 * 15 14 13 32 32 H 1.08006 * 123.45781 * 0.02562 * 19 18 16 33 33 H 1.08001 * 124.71648 * 179.97438 * 20 19 18 34 34 H 1.08002 * 124.58647 * 359.97438 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8834 -0.0011 12 8 0.5615 -5.1050 -0.0011 13 6 2.7333 -6.0288 -0.0005 14 6 1.9683 -7.3538 -0.0006 15 7 2.9204 -8.4673 -0.0006 16 6 2.4711 -9.7379 -0.0013 17 8 1.2753 -9.9603 -0.0013 18 6 3.4277 -10.8567 -0.0008 19 6 3.0295 -12.2449 -0.0019 20 6 4.0599 -13.0821 -0.0017 21 16 5.5747 -12.1958 -0.0075 22 6 4.7775 -10.6893 0.0009 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8897 26 1 3.1568 -3.4353 -0.0002 27 1 3.3593 -5.9711 0.8899 28 1 3.3606 -5.9708 -0.8900 29 1 1.3420 -7.4117 -0.8909 30 1 1.3413 -7.4115 0.8891 31 1 3.8741 -8.2900 -0.0002 32 1 1.9991 -12.5689 -0.0037 33 1 3.9774 -14.1590 -0.0021 34 1 5.2765 -9.7315 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350830824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:18 Heat of formation + Delta-G solvation = -53.489422 kcal Electronic energy + Delta-G solvation = -18269.024222 eV Core-core repulsion = 15100.124219 eV Total energy + Delta-G solvation = -3168.900003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.07287 -38.89540 -37.10367 -35.24906 -34.21612 -32.39361 -31.41336 -29.73825 -27.32242 -25.49568 -23.87963 -22.21671 -21.46471 -19.93835 -19.32407 -18.43382 -17.44195 -16.95108 -16.02478 -15.89789 -15.18851 -15.13342 -14.82441 -14.65766 -14.17554 -13.56090 -13.47377 -13.41408 -12.95255 -12.82880 -12.65620 -11.98598 -11.90439 -11.82923 -11.50193 -11.31256 -11.01774 -10.88717 -10.34666 -10.10523 -9.46485 -9.44570 -9.21000 -9.14844 -8.79459 -8.76273 -7.93770 -6.18855 -4.26426 0.39337 1.14719 1.51882 1.70831 2.93990 3.18830 3.23177 3.28019 3.28243 3.29702 4.09585 4.34312 4.35812 4.64748 4.83076 4.89379 5.02478 5.12671 5.17247 5.32578 5.43554 5.63495 5.70570 5.88754 5.93005 6.05410 6.29256 7.25855 7.32597 7.37308 7.48498 7.62043 7.94130 8.06800 8.56052 8.73487 9.03298 9.40102 10.91246 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.045675 B = 0.002347 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.883534 B =11929.135126 C =12516.268279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.249 3.751 10 N -0.711 5.711 11 C 0.501 3.499 12 O -0.552 6.552 13 C -0.154 4.154 14 C 0.135 3.865 15 N -0.725 5.725 16 C 0.574 3.426 17 O -0.531 6.531 18 C -0.150 4.150 19 C -0.085 4.085 20 C -0.236 4.236 21 S 0.182 5.818 22 C -0.214 4.214 23 H 0.267 0.733 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.391 0.609 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.397 0.603 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.237 -23.584 -0.012 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.359 5.359 11 C 0.285 3.715 12 O -0.431 6.431 13 C -0.195 4.195 14 C 0.012 3.988 15 N -0.377 5.377 16 C 0.359 3.641 17 O -0.408 6.408 18 C -0.169 4.169 19 C -0.114 4.114 20 C -0.371 4.371 21 S 0.447 5.553 22 C -0.352 4.352 23 H 0.077 0.923 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.223 0.777 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.231 0.769 32 H 0.173 0.827 33 H 0.188 0.812 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 14.820 -24.161 -0.021 28.344 hybrid contribution -0.055 1.715 0.009 1.716 sum 14.765 -22.446 -0.012 26.866 Atomic orbital electron populations 1.69960 1.06115 1.27485 1.48618 1.24963 0.94929 0.99483 0.94671 0.86462 0.79405 0.82293 0.78664 1.20065 1.21049 1.20072 1.21175 0.93200 0.90452 1.53543 0.91948 1.19126 0.88312 0.81906 0.97851 1.46459 1.11174 1.06099 1.72211 1.20139 0.89219 0.84294 0.77881 1.90708 1.16814 1.84848 1.50746 1.21826 0.99369 0.93842 1.04473 1.21102 0.90803 0.82482 1.04399 1.45880 1.10417 1.05720 1.75695 1.17570 0.87753 0.82154 0.76647 1.90832 1.16044 1.84646 1.49265 1.20386 0.92314 0.94613 1.09545 1.21184 1.00808 0.89972 0.99438 1.25532 0.95572 1.04070 1.11934 1.83086 1.08651 0.94173 1.69374 1.25693 0.97857 1.04695 1.06956 0.92331 0.95444 0.95456 0.77660 0.88748 0.88746 0.90220 0.90211 0.76902 0.82723 0.81250 0.81196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.98 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.55 -14.60 9.28 -34.44 -0.32 -14.92 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.51 5.43 -5.20 -0.03 6.48 16 10 N -0.71 -14.36 5.55 -61.47 -0.34 -14.70 16 11 C 0.50 9.50 7.83 -10.98 -0.09 9.41 16 12 O -0.55 -13.08 15.98 5.55 0.09 -12.99 16 13 C -0.15 -1.90 5.81 -27.88 -0.16 -2.06 16 14 C 0.14 1.85 4.96 -4.04 -0.02 1.83 16 15 N -0.73 -7.81 5.52 -61.46 -0.34 -8.15 16 16 C 0.57 7.45 7.79 -12.63 -0.10 7.35 16 17 O -0.53 -9.18 16.80 5.25 0.09 -9.09 16 18 C -0.15 -1.50 5.98 -104.63 -0.63 -2.13 16 19 C -0.09 -0.78 10.10 -39.02 -0.39 -1.17 16 20 C -0.24 -1.58 11.12 28.86 0.32 -1.26 16 21 S 0.18 1.04 23.02 -107.50 -2.48 -1.44 16 22 C -0.21 -1.50 10.38 29.93 0.31 -1.19 16 23 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.39 6.57 8.32 -40.82 -0.34 6.23 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 31 H 0.40 2.81 6.97 -40.82 -0.28 2.52 16 32 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 33 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.17 0.74 7.01 -52.49 -0.37 0.37 16 LS Contribution 318.25 15.07 4.80 4.80 Total: -1.00 -35.17 318.25 -7.57 -42.75 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.90 Total: 4.47 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.20 Total: 3.99 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.06 Total: -48.09 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.18 Total: -22.08 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.48 Total: -1.44 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.17 -7.57 -42.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350830824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.744 kcal (2) G-P(sol) polarization free energy of solvation -35.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds