Wall clock time and date at job start Tue Mar 31 2020 02:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00069 * 2 1 4 4 C 1.46903 * 110.99694 * 123.94641 * 2 1 3 5 5 C 1.50700 * 115.55060 * 43.22075 * 4 2 1 6 6 O 1.21279 * 120.00283 * 225.56176 * 5 4 2 7 7 N 1.34777 * 119.99816 * 45.55384 * 5 4 2 8 8 C 1.47076 * 120.88493 * 356.00610 * 7 5 4 9 9 C 1.53702 * 108.27909 * 128.74803 * 8 7 5 10 10 N 1.46904 * 109.25303 * 54.08443 * 9 8 7 11 11 C 1.46897 * 111.00029 * 172.60332 * 10 9 8 12 12 C 1.50700 * 109.46784 * 59.46533 * 11 10 9 13 13 H 1.08003 * 120.00300 * 5.17495 * 12 11 10 14 14 C 1.37875 * 120.00069 * 185.16962 * 12 11 10 15 15 N 1.31513 * 120.00305 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 120.00008 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47148 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47079 * 120.00210 * 16 14 12 19 19 H 1.48499 * 109.47195 * 240.00211 * 16 14 12 20 20 C 1.46893 * 111.26878 * 296.75535 * 10 9 8 21 21 C 1.47089 * 120.87972 * 176.28177 * 7 5 4 22 22 C 1.52999 * 117.50113 * 257.50672 * 4 2 1 23 23 C 1.52995 * 60.00061 * 252.51209 * 22 4 2 24 24 H 1.09004 * 109.46824 * 53.70625 * 1 2 3 25 25 H 1.08992 * 109.47571 * 293.70604 * 1 2 3 26 26 H 1.09007 * 109.47104 * 173.70101 * 1 2 3 27 27 H 1.09003 * 109.47445 * 63.94987 * 3 2 1 28 28 H 1.08998 * 109.47247 * 183.95509 * 3 2 1 29 29 H 1.09010 * 109.46829 * 303.94918 * 3 2 1 30 30 H 1.08996 * 109.63101 * 248.51882 * 8 7 5 31 31 H 1.09001 * 109.62995 * 9.10282 * 8 7 5 32 32 H 1.08994 * 109.65114 * 294.08277 * 9 8 7 33 33 H 1.08994 * 109.44331 * 173.95953 * 9 8 7 34 34 H 1.08993 * 109.47362 * 179.46474 * 11 10 9 35 35 H 1.09004 * 109.47436 * 299.47129 * 11 10 9 36 36 H 0.96996 * 120.00313 * 179.97438 * 15 14 12 37 37 H 1.08995 * 109.49714 * 303.14273 * 20 10 9 38 38 H 1.09005 * 109.49158 * 183.06025 * 20 10 9 39 39 H 1.08999 * 109.62465 * 350.89493 * 21 7 5 40 40 H 1.08996 * 109.62753 * 111.28851 * 21 7 5 41 41 H 1.08991 * 117.49822 * 0.02562 * 22 4 2 42 42 H 1.08999 * 117.49584 * 145.01953 * 22 4 2 43 43 H 1.08997 * 117.49868 * 252.50830 * 23 22 4 44 44 H 1.09002 * 117.50044 * 107.48933 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1377 5 6 1.3032 -2.0754 1.4157 6 8 0.9988 -2.3712 2.5518 7 7 1.0225 -2.9177 0.4017 8 6 1.3034 -2.5415 -0.9921 9 6 2.1102 -3.6756 -1.6443 10 7 1.3863 -4.9430 -1.4774 11 6 2.0329 -6.0223 -2.2355 12 6 3.4500 -6.1957 -1.7531 13 1 3.8063 -5.6258 -0.9076 14 6 4.2919 -7.0820 -2.3909 15 7 3.8584 -7.7757 -3.4207 16 14 6.0483 -7.2974 -1.7924 17 1 6.2865 -6.4090 -0.6266 18 1 6.2642 -8.7104 -1.3898 19 1 6.9903 -6.9446 -2.8848 20 6 1.2575 -5.3003 -0.0584 21 6 0.4214 -4.2352 0.6592 22 6 2.5226 0.0237 2.3375 23 6 3.5003 -0.6920 1.4034 24 1 -0.3633 0.6083 -0.8283 25 1 -0.3634 0.4131 0.9409 26 1 -0.3634 -1.0215 -0.1128 27 1 1.7043 1.8724 0.9233 28 1 3.0827 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8526 30 1 0.3657 -2.3994 -1.5291 31 1 1.8838 -1.6191 -1.0125 32 1 3.0881 -3.7501 -1.1689 33 1 2.2370 -3.4663 -2.7064 34 1 1.4823 -6.9511 -2.0869 35 1 2.0385 -5.7689 -3.2957 36 1 4.4507 -8.3989 -3.8697 37 1 2.2473 -5.3521 0.3949 38 1 0.7654 -6.2690 0.0295 39 1 0.4184 -4.4330 1.7311 40 1 -0.6007 -4.2516 0.2809 41 1 2.4785 1.1113 2.2829 42 1 2.3686 -0.4039 3.3283 43 1 3.9897 -1.5903 1.7795 44 1 4.0998 -0.0751 0.7339 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:57 Heat of formation + Delta-G solvation = 27.735544 kcal Electronic energy + Delta-G solvation = -23721.633572 eV Core-core repulsion = 20482.887728 eV Total energy + Delta-G solvation = -3238.745844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.70610 -38.32023 -37.21455 -34.60557 -33.74958 -32.29246 -30.66926 -28.42262 -27.68709 -25.71922 -24.90507 -23.14454 -22.80213 -22.58112 -21.47300 -19.80553 -18.27709 -17.53868 -16.39169 -16.07522 -15.85434 -14.86712 -14.77162 -14.68328 -14.52152 -14.32552 -13.90485 -13.65506 -13.37138 -13.09513 -12.80261 -12.49784 -12.27531 -11.98502 -11.89844 -11.69698 -11.43969 -11.18430 -11.11450 -10.98800 -10.87012 -10.68912 -10.62909 -10.52768 -10.21142 -9.88784 -9.68016 -9.52200 -8.46388 -8.38766 -8.35189 -7.21450 -6.05254 -4.14464 2.59645 3.12517 3.24665 3.33149 3.33703 3.36790 3.95468 4.38736 4.46791 4.52066 4.77369 4.88914 5.02405 5.08351 5.25279 5.29786 5.31330 5.40286 5.52421 5.54873 5.57852 5.62081 5.74063 5.80497 5.81745 5.89892 5.99197 5.99562 6.10813 6.29681 6.50770 6.60965 6.66382 6.68982 6.79392 6.85599 7.24211 7.49762 7.65398 7.87366 8.00788 8.23692 8.26247 8.32248 8.95891 9.52821 10.99760 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021183 B = 0.004894 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.474109 B = 5719.979262 C = 6027.344475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.494 5.494 3 C 0.013 3.987 4 C 0.014 3.986 5 C 0.555 3.445 6 O -0.551 6.551 7 N -0.592 5.592 8 C 0.096 3.904 9 C 0.051 3.949 10 N -0.541 5.541 11 C 0.187 3.813 12 C -0.549 4.549 13 H 0.056 0.944 14 C 0.066 3.934 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.051 3.949 21 C 0.114 3.886 22 C -0.186 4.186 23 C -0.145 4.145 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.078 0.922 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.028 0.972 35 H 0.036 0.964 36 H 0.262 0.738 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 17.123 6.210 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.217 5.217 3 C -0.135 4.135 4 C -0.079 4.079 5 C 0.341 3.659 6 O -0.429 6.429 7 N -0.323 5.323 8 C -0.027 4.027 9 C -0.078 4.078 10 N -0.266 5.266 11 C 0.061 3.939 12 C -0.588 4.588 13 H 0.074 0.926 14 C -0.137 4.137 15 N -0.529 5.529 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.078 4.078 21 C -0.009 4.009 22 C -0.226 4.226 23 C -0.183 4.183 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.097 0.903 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.138 0.862 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.241 16.637 6.016 18.451 hybrid contribution 1.670 -0.066 1.107 2.004 sum -3.571 16.571 7.123 18.387 Atomic orbital electron populations 1.22593 0.86477 1.03621 1.00836 1.62163 1.08508 1.13460 1.37616 1.22622 1.01395 0.88435 1.01050 1.21766 0.97876 0.94796 0.93457 1.19133 0.78307 0.83892 0.84525 1.90669 1.54075 1.76366 1.21764 1.48129 1.60296 1.16507 1.07376 1.22637 1.00787 0.99815 0.79456 1.22333 0.95490 0.89641 1.00347 1.62498 1.51215 1.04436 1.08415 1.19766 0.91828 0.88511 0.93748 1.21772 0.97958 1.23708 1.15337 0.92598 1.24949 0.98428 0.95545 0.94762 1.69946 1.36052 1.26015 1.20869 0.86611 0.85094 0.77986 0.78772 1.19915 1.20931 1.20892 1.22226 0.98706 0.96788 0.90127 1.21864 0.96770 0.81465 1.00779 1.23527 1.03305 0.99444 0.96275 1.23177 0.89975 1.03338 1.01786 0.90574 0.95136 0.90314 0.94696 0.90747 0.90644 0.91697 0.86183 0.94015 0.90575 0.95424 0.94586 0.92845 0.94143 0.90495 0.89796 0.91337 0.87724 0.87501 0.87830 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 8.61 60.06 0.52 0.65 16 2 N -0.49 -5.36 2.85 -236.75 -0.68 -6.04 16 3 C 0.01 0.10 8.52 60.06 0.51 0.61 16 4 C 0.01 0.19 1.78 -132.75 -0.24 -0.05 16 5 C 0.56 9.01 6.07 -10.99 -0.07 8.94 16 6 O -0.55 -10.47 15.79 5.56 0.09 -10.38 16 7 N -0.59 -9.55 2.54 -172.17 -0.44 -9.98 16 8 C 0.10 1.45 4.78 -3.36 -0.02 1.44 16 9 C 0.05 0.97 5.17 -3.46 -0.02 0.95 16 10 N -0.54 -11.29 4.83 -235.47 -1.14 -12.43 16 11 C 0.19 4.71 5.11 -4.98 -0.03 4.69 16 12 C -0.55 -14.88 7.75 -34.44 -0.27 -15.14 16 13 H 0.06 1.53 5.88 -52.48 -0.31 1.22 16 14 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 15 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.05 0.99 5.24 -3.70 -0.02 0.97 16 21 C 0.11 1.89 6.58 -3.59 -0.02 1.87 16 22 C -0.19 -2.08 9.23 -26.73 -0.25 -2.33 16 23 C -0.14 -1.68 9.64 -26.73 -0.26 -1.93 16 24 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 25 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.95 5.29 -51.92 -0.27 0.67 16 27 H 0.03 0.27 6.37 -51.93 -0.33 -0.06 16 28 H 0.07 0.57 6.50 -51.93 -0.34 0.23 16 29 H 0.07 0.52 8.09 -51.92 -0.42 0.10 16 30 H 0.06 0.94 7.66 -51.93 -0.40 0.54 16 31 H 0.12 1.69 4.80 -51.93 -0.25 1.44 16 32 H 0.04 0.88 6.80 -51.93 -0.35 0.53 16 33 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 34 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.04 0.88 6.91 -51.93 -0.36 0.52 16 38 H 0.08 1.46 8.06 -51.93 -0.42 1.05 16 39 H 0.08 1.41 7.09 -51.93 -0.37 1.04 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 0.95 5.93 -51.93 -0.31 0.64 16 42 H 0.11 1.34 7.72 -51.93 -0.40 0.94 16 43 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.11 1.05 6.76 -51.93 -0.35 0.70 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -30.52 333.10 -8.63 -39.15 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.96 Total: 1.09 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.25 Total: 2.38 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -1.51 Total: -53.61 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.52 -8.63 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.888 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds