Wall clock time and date at job start Tue Mar 31 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48554 * 110.99921 * 2 1 4 4 C 1.54386 * 104.59273 * 200.96093 * 3 2 1 5 5 C 1.54264 * 105.05869 * 23.85322 * 4 3 2 6 6 H 1.08997 * 110.32104 * 241.00041 * 5 4 3 7 7 C 1.50695 * 110.32009 * 118.89718 * 5 4 3 8 8 O 1.21274 * 120.00413 * 0.27043 * 7 5 4 9 9 N 1.34784 * 119.99635 * 180.02562 * 7 5 4 10 10 C 1.46918 * 120.63039 * 359.71713 * 9 7 5 11 11 C 1.53629 * 108.54410 * 126.36956 * 10 9 7 12 12 C 1.53042 * 109.24095 * 54.85227 * 11 10 9 13 13 N 1.46497 * 109.45193 * 178.49806 * 12 11 10 14 14 C 1.36940 * 120.00166 * 275.07073 * 13 12 11 15 15 H 1.07999 * 120.00119 * 359.97438 * 14 13 12 16 16 C 1.38812 * 119.99978 * 180.02562 * 14 13 12 17 17 N 1.31621 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99927 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47377 * 59.99320 * 18 16 14 20 20 H 1.48495 * 109.47199 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46971 * 299.99512 * 18 16 14 22 22 C 1.53042 * 109.54144 * 298.51747 * 12 11 10 23 23 C 1.46931 * 120.62757 * 179.97438 * 9 7 5 24 24 C 1.48559 * 110.99663 * 244.58048 * 2 1 3 25 25 H 1.08993 * 109.47055 * 59.87045 * 1 2 3 26 26 H 1.09003 * 109.47304 * 179.87885 * 1 2 3 27 27 H 1.09003 * 109.46826 * 299.87328 * 1 2 3 28 28 H 1.09004 * 110.41197 * 82.18825 * 3 2 1 29 29 H 1.08997 * 110.41337 * 319.74326 * 3 2 1 30 30 H 1.08998 * 110.32303 * 264.95861 * 4 3 2 31 31 H 1.08998 * 110.32178 * 142.74891 * 4 3 2 32 32 H 1.08995 * 109.59003 * 246.20126 * 10 9 7 33 33 H 1.08997 * 109.58851 * 6.63324 * 10 9 7 34 34 H 1.09001 * 109.63104 * 294.86584 * 11 10 9 35 35 H 1.09002 * 109.43669 * 174.72493 * 11 10 9 36 36 H 1.09006 * 109.45415 * 58.53401 * 12 11 10 37 37 H 0.97000 * 120.00194 * 95.05770 * 13 12 11 38 38 H 0.96996 * 119.99619 * 179.97438 * 17 16 14 39 39 H 1.08998 * 109.49049 * 301.40836 * 22 12 11 40 40 H 1.08996 * 109.52462 * 181.32960 * 22 12 11 41 41 H 1.08994 * 109.58636 * 353.37407 * 23 9 7 42 42 H 1.09001 * 109.57902 * 113.79870 * 23 9 7 43 43 H 1.09000 * 110.41190 * 40.26502 * 24 2 1 44 44 H 1.08999 * 110.41130 * 277.81959 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 -0.5345 5 6 3.4433 -0.0540 -1.3586 6 1 4.1496 -0.7687 -0.9363 7 6 3.7894 0.2355 -2.7964 8 8 4.0230 1.3728 -3.1467 9 7 3.8443 -0.7703 -3.6919 10 6 3.5753 -2.1547 -3.2802 11 6 2.4820 -2.7320 -4.1921 12 6 2.9134 -2.5835 -5.6530 13 7 1.8902 -3.1650 -6.5253 14 6 1.9016 -4.5078 -6.7937 15 1 2.6653 -5.1381 -6.3626 16 6 0.9324 -5.0586 -7.6207 17 7 0.0020 -4.2903 -8.1465 18 14 0.9485 -6.8902 -7.9874 19 1 0.8120 -7.6502 -6.7190 20 1 -0.1834 -7.2246 -8.8885 21 1 2.2295 -7.2519 -8.6457 22 6 3.0858 -1.1001 -5.9876 23 6 4.1799 -0.5037 -5.0973 24 6 2.0014 -0.5953 -1.2527 25 1 -0.3633 0.5158 -0.8888 26 1 -0.3634 -1.0277 -0.0022 27 1 -0.3633 0.5119 0.8912 28 1 2.0080 1.7916 1.0121 29 1 1.4099 2.0212 -0.6601 30 1 4.1484 1.1747 0.2934 31 1 3.6937 2.0995 -1.1700 32 1 4.4849 -2.7476 -3.3754 33 1 3.2344 -2.1684 -2.2450 34 1 1.5487 -2.1921 -4.0318 35 1 2.3367 -3.7872 -3.9611 36 1 3.8594 -3.1028 -5.8067 37 1 1.2043 -2.5989 -6.9127 38 1 -0.6751 -4.6752 -8.7247 39 1 2.1468 -0.5758 -5.8104 40 1 3.3701 -0.9935 -7.0344 41 1 4.2381 0.5723 -5.2613 42 1 5.1380 -0.9645 -5.3379 43 1 1.4098 -0.2712 -2.1089 44 1 2.0078 -1.6831 -1.1838 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997297321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:48 Heat of formation + Delta-G solvation = -15.691796 kcal Electronic energy + Delta-G solvation = -23100.038363 eV Core-core repulsion = 19859.409368 eV Total energy + Delta-G solvation = -3240.628995 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.62588 -38.46610 -37.25522 -34.54270 -32.70656 -31.95375 -30.90091 -29.44396 -28.84693 -26.13505 -24.92702 -23.04902 -23.00408 -21.54357 -21.40781 -20.02299 -18.61182 -17.58601 -17.09026 -16.24703 -15.79081 -15.25912 -14.94122 -14.72717 -14.38167 -13.95663 -13.78927 -13.65726 -13.50778 -13.23043 -13.07257 -12.75974 -12.40057 -11.98891 -11.79885 -11.76747 -11.48427 -11.39521 -11.30963 -11.00300 -10.92984 -10.83776 -10.81116 -10.48639 -10.29151 -9.87058 -9.74641 -9.68337 -8.94054 -8.75788 -8.51566 -7.01811 -5.80946 -3.10467 2.62238 3.03837 3.40487 3.45228 3.46282 3.83553 4.36542 4.42035 4.54386 4.57431 4.92090 5.02638 5.11424 5.17556 5.25962 5.28581 5.30017 5.34105 5.38437 5.47595 5.50935 5.56851 5.66997 5.68430 5.71166 5.76149 5.88927 5.92827 5.94293 6.01116 6.19979 6.33233 6.35326 6.47719 6.54272 6.60290 6.72922 6.85865 6.99874 7.49174 7.64497 8.20178 8.37259 9.48435 10.05687 10.40293 11.41529 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022785 B = 0.004060 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.564853 B = 6895.111083 C = 7583.818208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.515 5.515 3 C 0.031 3.969 4 C -0.116 4.116 5 C -0.113 4.113 6 H 0.105 0.895 7 C 0.520 3.480 8 O -0.548 6.548 9 N -0.603 5.603 10 C 0.099 3.901 11 C -0.149 4.149 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.242 4.242 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.933 5.933 18 Si 0.906 3.094 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.138 4.138 23 C 0.115 3.885 24 C 0.041 3.959 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.384 0.616 38 H 0.256 0.744 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.052 0.948 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 8.923 15.752 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.239 5.239 3 C -0.097 4.097 4 C -0.154 4.154 5 C -0.135 4.135 6 H 0.123 0.877 7 C 0.307 3.693 8 O -0.427 6.427 9 N -0.335 5.335 10 C -0.025 4.025 11 C -0.191 4.191 12 C 0.069 3.931 13 N -0.364 5.364 14 C -0.373 4.373 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.581 5.581 18 Si 0.737 3.263 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C -0.177 4.177 23 C -0.007 4.007 24 C -0.087 4.087 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.217 0.783 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.267 9.019 15.980 19.390 hybrid contribution -0.724 -0.625 -1.107 1.463 sum 5.543 8.394 14.873 17.955 Atomic orbital electron populations 1.22529 0.87654 1.02590 1.00952 1.65435 1.08535 1.15501 1.34401 1.23165 0.95313 0.90108 1.01137 1.22335 0.96548 0.97323 0.99221 1.22017 0.98605 1.00041 0.92828 0.87686 1.20455 0.76593 0.84655 0.87585 1.90633 1.50586 1.21312 1.80141 1.48142 1.68373 1.07676 1.09327 1.22155 0.99674 0.81126 0.99503 1.22746 0.97187 1.01221 0.97912 1.20163 0.93137 0.90929 0.88909 1.42430 1.31961 1.06578 1.55479 1.19188 1.09707 0.84611 1.23779 0.91205 1.24746 0.97914 0.97854 1.00283 1.69653 1.17421 1.34324 1.36669 0.86284 0.76978 0.85228 0.77780 1.21252 1.21701 1.21242 1.22193 0.98515 0.97600 0.99434 1.21617 0.97857 1.01832 0.79417 1.23235 0.93032 1.00623 0.91782 0.95099 0.90903 0.91186 0.89914 0.93614 0.90599 0.88780 0.91364 0.89867 0.92268 0.90611 0.93398 0.78285 0.93424 0.91978 0.90553 0.89442 0.91545 0.92932 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.53 60.07 0.57 0.68 16 2 N -0.51 -5.50 5.66 -238.23 -1.35 -6.85 16 3 C 0.03 0.31 6.49 -2.18 -0.01 0.29 16 4 C -0.12 -1.22 6.59 -25.34 -0.17 -1.39 16 5 C -0.11 -1.26 2.52 -90.39 -0.23 -1.49 16 6 H 0.11 1.01 7.85 -51.93 -0.41 0.60 16 7 C 0.52 7.31 6.94 -10.98 -0.08 7.23 16 8 O -0.55 -9.35 14.67 5.56 0.08 -9.27 16 9 N -0.60 -8.24 2.97 -172.54 -0.51 -8.75 16 10 C 0.10 1.23 6.00 -3.49 -0.02 1.21 16 11 C -0.15 -2.40 5.67 -26.38 -0.15 -2.55 16 12 C 0.18 3.34 2.73 -67.89 -0.19 3.15 16 13 N -0.72 -17.51 5.12 -53.38 -0.27 -17.78 16 14 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 18 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.14 -2.26 5.55 -26.63 -0.15 -2.41 16 23 C 0.12 1.64 6.43 -3.73 -0.02 1.62 16 24 C 0.04 0.46 4.92 -2.18 -0.01 0.45 16 25 H 0.03 0.31 7.97 -51.93 -0.41 -0.11 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.48 7.97 -51.93 -0.41 0.07 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.15 6.46 -51.93 -0.34 0.81 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.87 3.95 -51.93 -0.21 0.67 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.09 1.29 7.01 -51.93 -0.36 0.93 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.68 7.62 -51.93 -0.40 0.28 16 44 H 0.09 0.98 6.52 -51.93 -0.34 0.64 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -30.88 339.92 -9.31 -40.19 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -7.39 Total: 7.73 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.70 Total: -0.26 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -1.41 Total: -60.39 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.08 Total: -9.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.88 -9.31 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997297321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.496 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds