Wall clock time and date at job start Tue Mar 31 2020 02:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48527 * 111.00066 * 2 1 4 4 C 1.55094 * 103.28692 * 200.33284 * 3 2 1 5 5 C 1.54604 * 102.84471 * 37.30433 * 4 3 2 6 6 H 1.09007 * 110.30687 * 97.11597 * 5 4 3 7 7 C 1.50696 * 110.31234 * 219.18367 * 5 4 3 8 8 O 1.21280 * 119.99811 * 358.61671 * 7 5 4 9 9 N 1.34772 * 120.00235 * 178.61195 * 7 5 4 10 10 C 1.46500 * 120.00153 * 179.73121 * 9 7 5 11 11 C 1.53002 * 109.47207 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.63920 * 56.68269 * 11 10 9 13 13 C 1.55158 * 110.71850 * 180.02562 * 11 10 9 14 14 C 1.54915 * 101.57834 * 153.86304 * 13 11 10 15 15 N 1.47423 * 104.82985 * 322.98885 * 14 13 11 16 16 C 1.36945 * 125.64313 * 204.09110 * 15 14 13 17 17 H 1.08003 * 119.99656 * 169.98525 * 16 15 14 18 18 C 1.38810 * 120.00061 * 349.99301 * 16 15 14 19 19 N 1.31620 * 120.00205 * 350.41461 * 18 16 15 20 20 Si 1.86801 * 119.99765 * 170.41942 * 18 16 15 21 21 H 1.48504 * 109.46879 * 94.13917 * 20 18 16 22 22 H 1.48503 * 109.46954 * 214.13331 * 20 18 16 23 23 H 1.48497 * 109.47113 * 334.13622 * 20 18 16 24 24 C 1.47020 * 108.70645 * 24.12904 * 15 14 13 25 25 C 1.47903 * 110.99706 * 242.60292 * 2 1 3 26 26 H 1.09000 * 109.46830 * 177.39803 * 1 2 3 27 27 H 1.09000 * 109.47026 * 297.39468 * 1 2 3 28 28 H 1.08995 * 109.47400 * 57.39568 * 1 2 3 29 29 H 1.09001 * 110.66657 * 318.71870 * 3 2 1 30 30 H 1.09006 * 110.66720 * 81.67250 * 3 2 1 31 31 H 1.08996 * 110.71492 * 279.00081 * 4 3 2 32 32 H 1.09004 * 110.81183 * 155.65784 * 4 3 2 33 33 H 0.96998 * 119.99711 * 359.97438 * 9 7 5 34 34 H 1.09003 * 109.46756 * 299.99636 * 10 9 7 35 35 H 1.09001 * 109.47254 * 59.99531 * 10 9 7 36 36 H 1.09000 * 111.00469 * 271.93694 * 13 11 10 37 37 H 1.08997 * 111.00656 * 35.78799 * 13 11 10 38 38 H 1.09000 * 110.36397 * 204.15104 * 14 13 11 39 39 H 1.08996 * 110.45895 * 81.87776 * 14 13 11 40 40 H 0.96999 * 120.00219 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.88364 * 239.52270 * 24 15 14 42 42 H 1.09007 * 110.00572 * 118.42709 * 24 15 14 43 43 H 1.09005 * 109.91877 * 26.49320 * 25 2 1 44 44 H 1.09003 * 110.08059 * 265.28496 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4504 1.2121 -0.5245 5 6 3.2983 0.1053 -1.5931 6 1 3.2142 0.5470 -2.5860 7 6 4.4717 -0.8387 -1.5392 8 8 5.3691 -0.6460 -0.7465 9 7 4.5238 -1.8972 -2.3718 10 6 5.6674 -2.8116 -2.3234 11 6 5.4802 -3.9180 -3.3636 12 1 5.3502 -3.4920 -4.3584 13 6 6.6770 -4.9050 -3.3367 14 6 6.0230 -6.2015 -3.8762 15 7 4.6625 -6.2024 -3.3084 16 6 3.8822 -7.3097 -3.1077 17 1 2.9672 -7.2297 -2.5395 18 6 4.2673 -8.5349 -3.6345 19 7 5.2739 -8.6006 -4.4800 20 14 3.3569 -10.0903 -3.1434 21 1 2.2928 -10.3763 -4.1391 22 1 4.3101 -11.2281 -3.0972 23 1 2.7441 -9.9032 -1.8038 24 6 4.2819 -4.8175 -2.9940 25 6 1.9990 -0.6354 -1.2259 26 1 -0.3633 -1.0266 -0.0467 27 1 -0.3633 0.4728 0.9124 28 1 -0.3634 0.5537 -0.8657 29 1 1.4237 2.0204 -0.6729 30 1 2.0013 1.7987 1.0092 31 1 4.1138 0.8861 0.2766 32 1 3.8131 2.1360 -0.9751 33 1 3.8059 -2.0516 -3.0055 34 1 6.5826 -2.2606 -2.5404 35 1 5.7368 -3.2544 -1.3299 36 1 7.4768 -4.5673 -3.9958 37 1 7.0442 -5.0463 -2.3202 38 1 6.5770 -7.0761 -3.5351 39 1 5.9797 -6.1818 -4.9651 40 1 5.5428 -9.4567 -4.8484 41 1 4.0635 -4.7255 -1.9302 42 1 3.4079 -4.5292 -3.5782 43 1 1.2758 -0.5403 -2.0359 44 1 2.2117 -1.6882 -1.0399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028985621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:29 Heat of formation + Delta-G solvation = -11.619148 kcal Electronic energy + Delta-G solvation = -22386.902372 eV Core-core repulsion = 19146.449981 eV Total energy + Delta-G solvation = -3240.452392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31370 -38.40575 -37.50542 -34.65085 -32.70849 -32.31043 -30.08107 -29.24379 -28.09974 -26.17226 -25.44341 -23.67209 -22.09600 -21.41574 -20.46469 -19.85664 -19.40769 -17.45530 -16.77629 -16.35994 -15.98306 -15.52207 -15.03604 -14.68899 -14.48342 -14.40662 -13.85944 -13.58577 -13.34995 -12.93058 -12.50820 -12.48647 -12.18412 -11.82188 -11.79154 -11.74577 -11.65322 -11.52847 -11.38539 -11.01423 -10.87146 -10.80995 -10.45233 -10.13824 -10.02668 -9.90402 -9.70556 -9.61036 -8.94378 -8.72742 -8.58355 -6.80405 -5.75366 -3.07754 2.66006 3.22377 3.39185 3.45275 3.47526 3.72026 4.25827 4.36675 4.49138 4.68283 4.96646 5.01290 5.03488 5.13737 5.14848 5.22903 5.26345 5.32135 5.40241 5.49498 5.56546 5.60228 5.64330 5.69900 5.73438 5.87233 6.04270 6.06873 6.11289 6.32143 6.45423 6.54130 6.55515 6.56034 6.69916 6.71368 6.90328 7.49967 7.56601 7.57790 7.77878 8.25862 8.27015 9.19165 9.81256 10.48778 11.37863 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.003582 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.605152 B = 7814.084590 C = 8886.285907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.521 5.521 3 C 0.033 3.967 4 C -0.109 4.109 5 C -0.122 4.122 6 H 0.101 0.899 7 C 0.522 3.478 8 O -0.540 6.540 9 N -0.724 5.724 10 C 0.132 3.868 11 C -0.114 4.114 12 H 0.076 0.924 13 C -0.137 4.137 14 C 0.173 3.827 15 N -0.603 5.603 16 C -0.230 4.230 17 H 0.075 0.925 18 C -0.007 4.007 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.142 3.858 25 C 0.044 3.956 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.027 0.973 40 H 0.253 0.747 41 H 0.024 0.976 42 H 0.018 0.982 43 H 0.055 0.945 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 19.712 3.875 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.245 5.245 3 C -0.094 4.094 4 C -0.147 4.147 5 C -0.144 4.144 6 H 0.119 0.881 7 C 0.307 3.693 8 O -0.417 6.417 9 N -0.375 5.375 10 C 0.009 3.991 11 C -0.133 4.133 12 H 0.095 0.905 13 C -0.176 4.176 14 C 0.048 3.952 15 N -0.330 5.330 16 C -0.358 4.358 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.016 3.984 25 C -0.085 4.085 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.114 0.886 32 H 0.094 0.906 33 H 0.235 0.765 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.073 0.927 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.594 19.312 4.864 20.438 hybrid contribution -1.227 -0.555 -1.023 1.691 sum -5.820 18.757 3.840 20.011 Atomic orbital electron populations 1.22539 0.87537 1.02381 1.00895 1.64730 1.08276 1.15035 1.36412 1.23323 0.94976 0.89756 1.01392 1.22494 0.96825 0.96968 0.98433 1.22211 0.93923 0.96490 1.01818 0.88092 1.20297 0.87360 0.81382 0.80240 1.90678 1.39422 1.73719 1.37897 1.46079 1.24960 1.27221 1.39265 1.21450 0.87934 0.89756 0.99971 1.22428 0.98472 0.94596 0.97817 0.90530 1.22995 0.95820 0.97594 1.01171 1.21399 0.85023 0.93116 0.95671 1.44481 1.13981 1.00363 1.74137 1.19019 1.03752 0.85718 1.27337 0.90702 1.24817 0.98977 0.98063 0.98507 1.69956 1.29914 1.24103 1.32566 0.86138 0.78642 0.83073 0.78125 1.21629 1.21582 1.20573 1.21316 0.93837 0.86028 0.97249 1.22876 0.94000 1.00025 0.91575 0.91016 0.91139 0.95339 0.93702 0.89670 0.88558 0.90604 0.76498 0.91735 0.91235 0.91973 0.91832 0.91278 0.95539 0.93710 0.95794 0.96445 0.92696 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.07 0.56 0.69 16 2 N -0.52 -5.34 5.55 -238.61 -1.33 -6.66 16 3 C 0.03 0.29 6.56 -1.82 -0.01 0.27 16 4 C -0.11 -1.06 6.42 -24.78 -0.16 -1.22 16 5 C -0.12 -1.22 3.38 -90.41 -0.31 -1.52 16 6 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 7 C 0.52 6.97 6.94 -10.99 -0.08 6.89 16 8 O -0.54 -9.26 15.43 5.56 0.09 -9.17 16 9 N -0.72 -9.15 5.28 -60.29 -0.32 -9.47 16 10 C 0.13 1.93 4.99 -4.04 -0.02 1.91 16 11 C -0.11 -1.86 3.02 -88.78 -0.27 -2.13 16 12 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.14 -2.48 6.53 -24.58 -0.16 -2.64 16 14 C 0.17 4.13 5.42 -2.53 -0.01 4.12 16 15 N -0.60 -15.36 3.39 -170.07 -0.58 -15.93 16 16 C -0.23 -6.43 10.24 -15.06 -0.15 -6.59 16 17 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 18 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 19 N -0.92 -26.93 10.68 55.49 0.59 -26.34 16 20 Si 0.91 22.07 29.56 -169.99 -5.03 17.04 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.14 2.85 6.53 -3.07 -0.02 2.83 16 25 C 0.04 0.43 6.32 -2.75 -0.02 0.41 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.03 0.20 8.00 -51.93 -0.42 -0.21 16 29 H 0.04 0.33 7.96 -51.93 -0.41 -0.09 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.10 1.18 6.89 -51.93 -0.36 0.83 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 4.28 8.33 -40.82 -0.34 3.94 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.14 8.05 -51.93 -0.42 0.73 16 38 H 0.07 1.84 6.94 -51.93 -0.36 1.48 16 39 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.02 0.49 7.77 -51.93 -0.40 0.09 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.45 7.73 -51.93 -0.40 0.05 16 44 H 0.09 1.00 7.62 -51.93 -0.40 0.61 16 LS Contribution 347.22 15.07 5.23 5.23 Total: -1.00 -32.63 347.22 -9.77 -42.40 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.69 Total: 0.18 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.74 Total: 2.73 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -1.63 Total: -58.41 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.63 -9.77 -42.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028985621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.778 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds