Wall clock time and date at job start Tue Mar 31 2020 01:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.40198 * 120.36767 * 2 1 4 4 C 1.35349 * 119.94849 * 179.68409 * 3 2 1 5 5 N 1.35764 * 120.70218 * 0.56465 * 4 3 2 6 6 C 1.46502 * 119.62497 * 179.71656 * 5 4 3 7 7 C 1.52991 * 109.47527 * 269.73325 * 6 5 4 8 8 O 1.42907 * 109.47271 * 64.99982 * 7 6 5 9 9 C 1.42899 * 114.00282 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47176 * 180.02562 * 9 8 7 11 11 H 1.08002 * 120.00003 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00083 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00333 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99877 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47036 * 90.00050 * 14 12 10 16 16 H 1.48498 * 109.46751 * 210.00001 * 14 12 10 17 17 H 1.48503 * 109.47147 * 329.99819 * 14 12 10 18 18 C 1.34655 * 120.74821 * 359.45379 * 5 4 3 19 19 O 1.22066 * 119.98399 * 180.27483 * 18 5 4 20 20 C 1.36401 * 120.37199 * 179.97438 * 2 1 3 21 21 N 1.48009 * 120.34236 * 0.02562 * 20 2 1 22 22 O 1.21795 * 120.00014 * 353.74771 * 21 20 2 23 23 O 1.21799 * 119.99482 * 173.75473 * 21 20 2 24 24 H 1.08996 * 109.47418 * 264.44216 * 1 2 3 25 25 H 1.09004 * 109.47043 * 24.44541 * 1 2 3 26 26 H 1.08999 * 109.47066 * 144.44493 * 1 2 3 27 27 H 1.07996 * 120.02177 * 359.97438 * 3 2 1 28 28 H 1.08009 * 119.64865 * 180.28557 * 4 3 2 29 29 H 1.09004 * 109.46689 * 29.73577 * 6 5 4 30 30 H 1.08996 * 109.46834 * 149.72998 * 6 5 4 31 31 H 1.09005 * 109.47155 * 184.99877 * 7 6 5 32 32 H 1.09002 * 109.47348 * 305.00115 * 7 6 5 33 33 H 1.08997 * 109.47134 * 300.00242 * 9 8 7 34 34 H 1.08997 * 109.47149 * 59.99647 * 9 8 7 35 35 H 0.97004 * 119.99980 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0065 5 7 4.2538 0.0274 0.0015 6 6 5.7187 0.0442 0.0024 7 6 6.2297 0.0500 -1.4397 8 8 5.8380 1.2666 -2.0790 9 6 6.2681 1.3740 -3.4375 10 6 5.8032 2.6885 -4.0092 11 1 5.2356 3.3733 -3.3965 12 6 6.1015 3.0165 -5.3147 13 7 5.6953 4.1635 -5.8138 14 14 7.0825 1.8318 -6.3746 15 1 6.1534 0.9124 -7.0793 16 1 7.8722 2.5977 -7.3721 17 1 8.0018 1.0435 -5.5151 18 6 3.6017 -1.1507 0.0010 19 8 4.2313 -2.1965 0.0016 20 6 2.1966 -1.1768 0.0005 21 7 1.4726 -2.4677 0.0005 22 8 0.2602 -2.4860 0.1149 23 8 2.0894 -3.5118 -0.1138 24 1 -0.3634 -0.0995 1.0228 25 1 -0.3633 0.9356 -0.4253 26 1 -0.3633 -0.8361 -0.5976 27 1 1.6821 2.1485 -0.0004 28 1 4.1103 2.1345 0.0111 29 1 6.0714 0.9384 0.5164 30 1 6.0919 -0.8414 0.5166 31 1 7.3170 -0.0270 -1.4402 32 1 5.8051 -0.7968 -1.9790 33 1 7.3562 1.3246 -3.4791 34 1 5.8448 0.5546 -4.0185 35 1 5.9049 4.3941 -6.7325 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338554050.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:18 Heat of formation + Delta-G solvation = -46.020736 kcal Electronic energy + Delta-G solvation = -22215.933296 eV Core-core repulsion = 18604.604288 eV Total energy + Delta-G solvation = -3611.329008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.37938 -41.23637 -37.67834 -37.47872 -36.19908 -35.58782 -32.86974 -31.35960 -30.56087 -28.85690 -27.63710 -26.21179 -23.53979 -23.17673 -22.10123 -21.81169 -19.33697 -18.77762 -17.61994 -17.45384 -17.19555 -17.02111 -16.16584 -15.83470 -15.74245 -15.02716 -14.66216 -14.41702 -13.79525 -13.53877 -13.46856 -12.96792 -12.83808 -12.78003 -12.48943 -12.12334 -11.92766 -11.33994 -11.10846 -11.08140 -10.93725 -10.92045 -10.65667 -10.30881 -10.21755 -10.03957 -9.42829 -9.16471 -8.71356 -8.58893 -6.29540 -4.30538 -0.23729 1.22786 1.43726 1.45577 2.36252 3.09177 3.13568 3.20859 3.22070 3.94439 4.14305 4.20503 4.24538 4.37239 4.40040 4.80323 4.92942 4.96397 5.02470 5.23098 5.27362 5.34357 5.42531 5.55935 5.68976 5.71224 5.79530 6.03022 6.36316 6.50224 6.62726 6.76180 7.36897 7.54319 7.66817 7.95089 8.39765 8.76735 9.28813 10.82836 Molecular weight = 282.11amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.004387 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.931250 B = 6381.581675 C = 6627.068794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.125 3.875 3 C -0.261 4.261 4 C 0.233 3.767 5 N -0.483 5.483 6 C 0.095 3.905 7 C 0.038 3.962 8 O -0.386 6.386 9 C 0.172 3.828 10 C -0.525 4.525 11 H 0.082 0.918 12 C 0.076 3.924 13 N -0.891 5.891 14 Si 0.874 3.126 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.266 1.266 18 C 0.539 3.461 19 O -0.502 6.502 20 C -0.211 4.211 21 N 0.062 4.938 22 O -0.196 6.196 23 O -0.145 6.145 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.108 0.892 27 H 0.169 0.831 28 H 0.188 0.812 29 H 0.110 0.890 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.007 0.993 34 H -0.001 1.001 35 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 -4.076 14.186 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.119 3.881 3 C -0.284 4.284 4 C 0.100 3.900 5 N -0.192 5.192 6 C -0.025 4.025 7 C -0.040 4.040 8 O -0.306 6.306 9 C 0.097 3.903 10 C -0.563 4.563 11 H 0.100 0.900 12 C -0.127 4.127 13 N -0.529 5.529 14 Si 0.700 3.300 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.191 1.191 18 C 0.337 3.663 19 O -0.379 6.379 20 C -0.301 4.301 21 N 0.574 4.426 22 O -0.398 6.398 23 O -0.364 6.364 24 H 0.119 0.881 25 H 0.102 0.898 26 H 0.126 0.874 27 H 0.187 0.813 28 H 0.205 0.795 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.796 -3.943 14.104 15.410 hybrid contribution 0.536 -0.875 -0.995 1.429 sum -4.260 -4.818 13.109 14.601 Atomic orbital electron populations 1.21554 0.87972 1.05650 1.05110 1.20443 0.98625 0.90601 0.78385 1.20669 0.92530 0.98296 1.16867 1.22701 0.93599 0.90776 0.82880 1.45625 1.10035 1.05962 1.57539 1.22342 0.75347 1.06032 0.98794 1.22701 0.99327 0.90170 0.91828 1.87798 1.78472 1.35627 1.28694 1.20641 0.94101 0.97920 0.77641 1.20780 1.36430 1.01446 0.97596 0.89959 1.24738 0.95399 0.95257 0.97281 1.69853 1.45602 1.21752 1.15644 0.86881 0.80818 0.81402 0.80861 1.19829 1.20543 1.19099 1.15863 0.86787 0.83939 0.79695 1.91098 1.68045 1.29270 1.49486 1.21295 0.92641 0.84771 1.31415 1.42708 1.00372 1.01983 0.97577 1.94400 0.96187 1.93454 1.55740 1.94616 1.69020 1.20152 1.52626 0.88111 0.89756 0.87396 0.81317 0.79508 0.87225 0.86582 0.91507 0.93046 0.97540 0.98306 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.77 36.00 0.32 -0.99 16 2 C 0.13 1.43 5.89 -104.55 -0.62 0.82 16 3 C -0.26 -2.41 9.69 -39.88 -0.39 -2.80 16 4 C 0.23 2.35 9.77 -16.84 -0.16 2.18 16 5 N -0.48 -6.13 2.57 -119.77 -0.31 -6.44 16 6 C 0.10 1.07 5.77 -4.05 -0.02 1.05 16 7 C 0.04 0.57 6.28 37.15 0.23 0.80 16 8 O -0.39 -7.50 9.79 -35.23 -0.34 -7.84 16 9 C 0.17 3.99 4.76 36.00 0.17 4.16 16 10 C -0.52 -14.35 9.99 -34.44 -0.34 -14.70 16 11 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 12 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 13 N -0.89 -26.03 13.96 55.43 0.77 -25.26 16 14 Si 0.87 20.53 27.47 -169.99 -4.67 15.86 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.27 -5.98 6.54 56.52 0.37 -5.62 16 18 C 0.54 8.60 7.40 -15.45 -0.11 8.49 16 19 O -0.50 -9.50 14.84 -16.83 -0.25 -9.75 16 20 C -0.21 -3.21 6.85 -79.75 -0.55 -3.75 16 21 N 0.06 1.07 4.45 34.06 0.15 1.22 16 22 O -0.20 -3.08 15.38 -29.46 -0.45 -3.53 16 23 O -0.15 -2.82 17.46 -36.37 -0.64 -3.46 16 24 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 26 H 0.11 1.15 5.79 -51.93 -0.30 0.84 16 27 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.19 1.42 8.03 -52.48 -0.42 1.00 16 29 H 0.11 0.89 8.01 -51.93 -0.42 0.48 16 30 H 0.12 1.22 7.39 -51.93 -0.38 0.83 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.01 0.16 7.20 -51.93 -0.37 -0.22 16 34 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -34.80 308.20 -6.65 -41.45 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: -3.99 Total: -4.16 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.57 Total: -2.72 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.62 Total: -30.48 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -1.68 Total: -24.58 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.80 -6.65 -41.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338554050.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.574 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds