Wall clock time and date at job start Tue Mar 31 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 119.99952 * 2 1 4 4 O 1.21504 * 120.00519 * 0.02562 * 3 2 1 5 5 O 1.34721 * 119.99930 * 180.02562 * 3 2 1 6 6 N 1.21801 * 117.00325 * 180.02562 * 5 3 2 7 7 C 1.29481 * 120.00103 * 179.97438 * 6 5 3 8 8 C 1.46944 * 119.99999 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00120 * 359.97438 * 8 7 6 10 10 O 1.21254 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.50701 * 119.99880 * 179.97438 * 7 6 5 12 12 H 1.08996 * 115.55081 * 150.02704 * 11 7 6 13 13 C 1.53074 * 117.51238 * 295.74682 * 11 7 6 14 14 H 1.09001 * 117.49372 * 214.96408 * 13 11 7 15 15 C 1.50703 * 117.51588 * 0.02562 * 13 11 7 16 16 H 1.07995 * 119.99831 * 73.81053 * 15 13 11 17 17 C 1.37872 * 119.99754 * 253.81411 * 15 13 11 18 18 N 1.31512 * 120.00571 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 119.99842 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46870 * 59.99850 * 19 17 15 21 21 H 1.48501 * 109.47055 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46971 * 299.99924 * 19 17 15 23 23 C 1.52998 * 117.49820 * 4.35459 * 11 7 6 24 24 C 1.52997 * 117.50211 * 0.02562 * 23 11 7 25 25 C 1.52998 * 117.49798 * 144.99505 * 23 11 7 26 26 H 1.09001 * 109.46898 * 59.99391 * 1 2 3 27 27 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46702 * 299.99941 * 1 2 3 29 29 H 0.96996 * 119.99648 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46964 * 60.00015 * 9 8 7 31 31 H 1.09002 * 109.46835 * 180.02562 * 9 8 7 32 32 H 1.08993 * 109.46916 * 300.00094 * 9 8 7 33 33 H 0.96996 * 120.00332 * 180.02562 * 18 17 15 34 34 H 1.09000 * 109.47777 * 195.09597 * 24 23 11 35 35 H 1.09006 * 109.47287 * 75.08879 * 24 23 11 36 36 H 1.09003 * 109.47005 * 315.09527 * 24 23 11 37 37 H 1.09000 * 109.47363 * 299.91941 * 25 23 11 38 38 H 1.09008 * 109.47016 * 59.91421 * 25 23 11 39 39 H 1.09004 * 109.47413 * 179.91094 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5314 2.2195 0.0005 5 8 3.4861 1.1672 -0.0005 6 7 4.0391 2.2524 0.0000 7 6 5.3322 2.3201 0.0000 8 6 6.1324 1.0877 0.0000 9 6 5.4482 -0.2550 0.0006 10 8 7.3433 1.1511 -0.0004 11 6 6.0163 3.6628 0.0001 12 1 6.9888 3.6950 0.4914 13 6 5.8120 4.5607 -1.2227 14 1 6.6502 5.1832 -1.5357 15 6 4.9414 4.0348 -2.3348 16 1 3.8696 3.9942 -2.2083 17 6 5.5132 3.6057 -3.5137 18 7 6.8183 3.6556 -3.6680 19 14 4.4342 2.9532 -4.8920 20 1 3.4830 4.0107 -5.3187 21 1 5.2856 2.5600 -6.0433 22 1 3.6761 1.7708 -4.4096 23 6 5.1314 4.9066 0.1031 24 6 3.6195 4.6921 0.1988 25 6 5.6791 6.1003 0.8881 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9499 -0.8400 -0.0004 30 1 4.8252 -0.3457 -0.8892 31 1 6.1990 -1.0453 0.0010 32 1 4.8258 -0.3452 0.8907 33 1 7.2206 3.3540 -4.4975 34 1 3.1056 5.6320 -0.0023 35 1 3.3644 4.3454 1.2003 36 1 3.3114 3.9457 -0.5334 37 1 5.8729 5.8000 1.9178 38 1 6.6065 6.4425 0.4287 39 1 4.9482 6.9089 0.8767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004844178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:30 Heat of formation + Delta-G solvation = -2.607464 kcal Electronic energy + Delta-G solvation = -23653.739623 eV Core-core repulsion = 20180.126251 eV Total energy + Delta-G solvation = -3473.613372 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.22822 -39.19936 -38.23610 -37.45319 -34.76764 -33.03567 -32.33126 -29.72362 -28.56585 -27.24039 -26.70817 -25.48202 -24.05544 -21.64589 -20.57815 -19.64588 -19.24838 -17.95056 -17.21164 -16.48094 -16.16066 -15.59261 -14.80128 -14.78728 -14.61287 -14.35139 -14.05249 -13.73337 -13.33466 -12.82717 -12.57123 -12.50540 -12.34046 -12.03091 -11.88437 -11.72957 -11.36121 -11.26533 -10.97922 -10.83203 -10.69917 -10.39373 -10.16300 -9.89823 -9.73480 -9.42211 -9.04392 -8.65250 -8.59360 -7.98799 -7.88634 -6.08224 -4.05885 1.46805 2.03359 2.83734 3.26013 3.32038 3.35783 3.51224 4.18040 4.31822 4.38359 4.94988 5.03017 5.26976 5.28875 5.42686 5.54475 5.56626 5.68503 5.87907 5.98883 6.06416 6.09294 6.18893 6.29428 6.47062 6.58835 6.64984 6.73714 6.78810 7.13063 7.20320 7.23118 7.26534 7.63209 7.69186 7.85789 7.98775 8.02114 8.45089 8.98332 9.03103 9.53704 11.01587 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.008035 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.278625 B = 3483.909361 C = 3895.695238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.713 5.713 3 C 0.642 3.358 4 O -0.518 6.518 5 O -0.134 6.134 6 N -0.281 5.281 7 C 0.126 3.874 8 C 0.362 3.638 9 C -0.193 4.193 10 O -0.441 6.441 11 C -0.135 4.135 12 H 0.104 0.896 13 C 0.069 3.931 14 H 0.082 0.918 15 C -0.486 4.486 16 H 0.069 0.931 17 C 0.068 3.932 18 N -0.877 5.877 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.279 1.279 23 C -0.144 4.144 24 C -0.095 4.095 25 C -0.106 4.106 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.407 0.593 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.263 0.737 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.102 0.898 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 -9.329 8.162 15.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.375 5.375 3 C 0.394 3.606 4 O -0.399 6.399 5 O -0.162 6.162 6 N -0.025 5.025 7 C -0.056 4.056 8 C 0.235 3.765 9 C -0.250 4.250 10 O -0.310 6.310 11 C -0.156 4.156 12 H 0.122 0.878 13 C 0.049 3.951 14 H 0.100 0.900 15 C -0.523 4.523 16 H 0.087 0.913 17 C -0.136 4.136 18 N -0.514 5.514 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.205 1.205 23 C -0.145 4.145 24 C -0.151 4.151 25 C -0.163 4.163 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.241 0.759 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.120 0.880 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.101 -8.279 8.029 14.692 hybrid contribution 0.236 -1.528 -0.811 1.746 sum -8.865 -9.807 7.218 15.062 Atomic orbital electron populations 1.21577 0.76146 1.02731 1.03041 1.44340 1.07488 1.06077 1.79565 1.18330 0.79893 0.84923 0.77503 1.91025 1.67381 1.30246 1.51262 1.83668 1.21305 1.30410 1.80853 1.71790 1.10507 1.08340 1.11874 1.24318 0.87012 0.96390 0.97837 1.23436 0.89795 0.91197 0.72092 1.22391 1.02231 0.96028 1.04317 1.90498 1.16395 1.89935 1.34197 1.21235 0.97311 0.84328 1.12706 0.87844 1.20238 0.96512 0.93404 0.84996 0.90016 1.20729 0.93358 1.40878 0.97381 0.91259 1.25049 0.94833 0.95496 0.98252 1.69966 1.09387 1.45812 1.26216 0.86731 0.80539 0.79557 0.81714 1.19783 1.21146 1.20510 1.21668 0.94394 0.93596 1.04803 1.21462 0.91671 1.00594 1.01423 1.21267 1.00036 0.96626 0.98406 0.91659 0.89759 0.91719 0.75869 0.88870 0.90144 0.89241 0.92745 0.95251 0.95206 0.88007 0.93925 0.93088 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.85 10.70 59.85 0.64 1.49 16 2 N -0.71 -7.46 5.72 -72.10 -0.41 -7.88 16 3 C 0.64 10.43 8.83 54.05 0.48 10.91 16 4 O -0.52 -10.35 15.86 -19.27 -0.31 -10.65 16 5 O -0.13 -2.32 6.20 -9.55 -0.06 -2.38 16 6 N -0.28 -5.87 5.44 34.95 0.19 -5.68 16 7 C 0.13 2.74 5.91 -80.06 -0.47 2.27 16 8 C 0.36 7.27 7.23 -30.78 -0.22 7.05 16 9 C -0.19 -2.79 8.46 36.01 0.30 -2.48 16 10 O -0.44 -10.06 17.28 5.58 0.10 -9.96 16 11 C -0.13 -3.13 5.51 -91.73 -0.51 -3.63 16 12 H 0.10 2.34 8.00 -51.93 -0.42 1.93 16 13 C 0.07 1.76 5.17 -91.73 -0.47 1.28 16 14 H 0.08 2.22 7.93 -51.93 -0.41 1.81 16 15 C -0.49 -13.37 7.36 -34.44 -0.25 -13.62 16 16 H 0.07 1.95 5.92 -52.49 -0.31 1.64 16 17 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 18 N -0.88 -25.59 13.20 55.43 0.73 -24.86 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.59 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.14 -3.17 2.70 -154.51 -0.42 -3.58 16 24 C -0.09 -2.09 7.71 37.16 0.29 -1.80 16 25 C -0.11 -1.96 9.85 37.16 0.37 -1.60 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.41 2.91 8.94 -40.82 -0.36 2.54 16 30 H 0.09 1.32 7.31 -51.93 -0.38 0.94 16 31 H 0.08 1.04 8.12 -51.93 -0.42 0.61 16 32 H 0.09 1.07 7.32 -51.93 -0.38 0.69 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.63 8.04 -51.93 -0.42 0.21 16 36 H 0.10 2.47 2.98 -51.93 -0.15 2.32 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.92 7.90 -51.92 -0.41 0.51 16 39 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -33.92 329.01 -5.52 -39.44 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.34 Total: 2.34 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.37 Total: -1.92 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.51 Total: -38.42 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.27 Total: -23.00 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.92 -5.52 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004844178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.833 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds