Wall clock time and date at job start Tue Mar 31 2020 03:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 119.99952 * 2 1 4 4 O 1.21504 * 120.00519 * 0.02562 * 3 2 1 5 5 O 1.34721 * 119.99930 * 180.02562 * 3 2 1 6 6 N 1.21801 * 117.00325 * 180.02562 * 5 3 2 7 7 C 1.29481 * 120.00103 * 179.97438 * 6 5 3 8 8 C 1.46944 * 119.99999 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00120 * 359.97438 * 8 7 6 10 10 O 1.21254 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.50701 * 119.99880 * 179.97438 * 7 6 5 12 12 H 1.08996 * 115.55081 * 150.02704 * 11 7 6 13 13 C 1.53074 * 117.51238 * 295.74682 * 11 7 6 14 14 H 1.09001 * 117.49372 * 214.96408 * 13 11 7 15 15 C 1.50703 * 117.51588 * 0.02562 * 13 11 7 16 16 H 1.07995 * 119.99831 * 73.81053 * 15 13 11 17 17 C 1.37872 * 119.99754 * 253.81411 * 15 13 11 18 18 N 1.31512 * 120.00571 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 119.99842 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46870 * 59.99850 * 19 17 15 21 21 H 1.48501 * 109.47055 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46971 * 299.99924 * 19 17 15 23 23 C 1.52998 * 117.49820 * 4.35459 * 11 7 6 24 24 C 1.52997 * 117.50211 * 0.02562 * 23 11 7 25 25 C 1.52998 * 117.49798 * 144.99505 * 23 11 7 26 26 H 1.09001 * 109.46898 * 59.99391 * 1 2 3 27 27 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46702 * 299.99941 * 1 2 3 29 29 H 0.96996 * 119.99648 * 180.02562 * 2 1 3 30 30 H 1.08996 * 109.46964 * 60.00015 * 9 8 7 31 31 H 1.09002 * 109.46835 * 180.02562 * 9 8 7 32 32 H 1.08993 * 109.46916 * 300.00094 * 9 8 7 33 33 H 0.96996 * 120.00332 * 180.02562 * 18 17 15 34 34 H 1.09000 * 109.47777 * 195.09597 * 24 23 11 35 35 H 1.09006 * 109.47287 * 75.08879 * 24 23 11 36 36 H 1.09003 * 109.47005 * 315.09527 * 24 23 11 37 37 H 1.09000 * 109.47363 * 299.91941 * 25 23 11 38 38 H 1.09008 * 109.47016 * 59.91421 * 25 23 11 39 39 H 1.09004 * 109.47413 * 179.91094 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5314 2.2195 0.0005 5 8 3.4861 1.1672 -0.0005 6 7 4.0391 2.2524 0.0000 7 6 5.3322 2.3201 0.0000 8 6 6.1324 1.0877 0.0000 9 6 5.4482 -0.2550 0.0006 10 8 7.3433 1.1511 -0.0004 11 6 6.0163 3.6628 0.0001 12 1 6.9888 3.6950 0.4914 13 6 5.8120 4.5607 -1.2227 14 1 6.6502 5.1832 -1.5357 15 6 4.9414 4.0348 -2.3348 16 1 3.8696 3.9942 -2.2083 17 6 5.5132 3.6057 -3.5137 18 7 6.8183 3.6556 -3.6680 19 14 4.4342 2.9532 -4.8920 20 1 3.4830 4.0107 -5.3187 21 1 5.2856 2.5600 -6.0433 22 1 3.6761 1.7708 -4.4096 23 6 5.1314 4.9066 0.1031 24 6 3.6195 4.6921 0.1988 25 6 5.6791 6.1003 0.8881 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.9499 -0.8400 -0.0004 30 1 4.8252 -0.3457 -0.8892 31 1 6.1990 -1.0453 0.0010 32 1 4.8258 -0.3452 0.8907 33 1 7.2206 3.3540 -4.4975 34 1 3.1056 5.6320 -0.0023 35 1 3.3644 4.3454 1.2003 36 1 3.3114 3.9457 -0.5334 37 1 5.8729 5.8000 1.9178 38 1 6.6065 6.4425 0.4287 39 1 4.9482 6.9089 0.8767 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004844178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:21:29 Heat of formation + Delta-G solvation = -25.959183 kcal Electronic energy + Delta-G solvation = -23654.752230 eV Core-core repulsion = 20180.126251 eV Total energy + Delta-G solvation = -3474.625979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.73979 -40.71218 -39.62858 -39.21057 -35.87835 -34.68602 -34.32291 -31.02024 -30.23433 -28.53557 -28.41302 -27.12676 -25.65805 -23.00149 -22.20448 -21.28870 -20.54406 -19.70244 -18.65644 -18.19900 -17.99619 -16.68451 -16.59286 -16.26066 -16.08881 -15.70852 -15.47450 -15.22764 -15.06035 -14.51194 -13.90603 -13.75747 -13.59137 -13.45191 -13.22377 -13.15138 -13.08162 -12.87411 -12.80857 -12.65667 -12.29490 -12.21067 -11.95127 -11.64065 -11.38673 -10.99574 -10.70059 -10.40777 -10.26752 -9.77065 -9.62455 -8.19084 -6.21886 -0.10858 0.82570 1.31011 1.34446 1.42569 1.46836 1.98091 2.35589 2.82089 3.04123 3.10289 3.52633 3.98692 4.19836 4.33811 4.38485 4.45277 4.49400 4.55287 4.59436 4.64228 4.71879 4.87921 4.95863 4.96385 5.00348 5.09516 5.15985 5.25849 5.36297 5.42397 5.50894 5.60259 5.73452 6.02033 6.23464 6.37253 6.40084 6.69263 6.84588 7.39941 7.62901 8.91557 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.008035 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.278625 B = 3483.909361 C = 3895.695238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.684 5.684 3 C 0.632 3.368 4 O -0.560 6.560 5 O -0.116 6.116 6 N -0.276 5.276 7 C 0.089 3.911 8 C 0.357 3.643 9 C -0.182 4.182 10 O -0.482 6.482 11 C -0.132 4.132 12 H 0.099 0.901 13 C 0.033 3.967 14 H 0.053 0.947 15 C -0.486 4.486 16 H 0.059 0.941 17 C 0.018 3.982 18 N -0.916 5.916 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.273 1.273 23 C -0.127 4.127 24 C -0.086 4.086 25 C -0.103 4.103 26 H 0.052 0.948 27 H 0.134 0.866 28 H 0.061 0.939 29 H 0.427 0.573 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.262 0.738 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 -11.450 9.034 18.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.346 5.346 3 C 0.383 3.617 4 O -0.444 6.444 5 O -0.150 6.150 6 N -0.015 5.015 7 C -0.092 4.092 8 C 0.233 3.767 9 C -0.238 4.238 10 O -0.355 6.355 11 C -0.153 4.153 12 H 0.117 0.883 13 C 0.013 3.987 14 H 0.071 0.929 15 C -0.524 4.524 16 H 0.077 0.923 17 C -0.181 4.181 18 N -0.554 5.554 19 Si 0.768 3.232 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.198 1.198 23 C -0.127 4.127 24 C -0.143 4.143 25 C -0.161 4.161 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.080 0.920 29 H 0.265 0.735 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.139 0.861 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.339 -10.416 8.909 17.789 hybrid contribution 0.745 -0.921 -0.992 1.545 sum -10.594 -11.338 7.917 17.420 Atomic orbital electron populations 1.21915 0.74119 1.05748 1.02330 1.44452 1.08404 1.04935 1.76785 1.18843 0.79098 0.86150 0.77617 1.91008 1.67653 1.32199 1.53561 1.83662 1.22361 1.28978 1.80040 1.71705 1.10432 1.09882 1.09483 1.24269 0.87803 0.96784 1.00376 1.24073 0.89322 0.92794 0.70529 1.22387 1.02801 0.92697 1.05936 1.90481 1.17899 1.90551 1.36522 1.21106 0.97866 0.85949 1.10343 0.88343 1.20051 0.96728 0.95591 0.86333 0.92933 1.20808 0.92893 1.40478 0.98184 0.92263 1.25743 0.95884 0.96029 1.00494 1.70090 1.10909 1.47618 1.26773 0.85850 0.79034 0.79160 0.79196 1.19352 1.20553 1.19792 1.21817 0.94437 0.94388 1.02100 1.21347 0.91521 1.00298 1.01153 1.21274 1.00279 0.95570 0.98928 0.92876 0.84830 0.91982 0.73481 0.88065 0.88177 0.86148 0.92929 0.94633 0.94373 0.90042 0.91787 0.93216 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.22 10.70 127.77 1.37 2.58 16 2 N -0.68 -11.79 5.72 -612.40 -3.50 -15.29 16 3 C 0.63 19.10 8.83 129.79 1.15 20.25 16 4 O -0.56 -21.73 15.86 19.82 0.31 -21.41 16 5 O -0.12 -3.79 6.20 87.44 0.54 -3.25 16 6 N -0.28 -11.30 5.44 -43.32 -0.24 -11.54 16 7 C 0.09 3.89 5.91 45.19 0.27 4.15 16 8 C 0.36 14.20 7.23 27.97 0.20 14.41 16 9 C -0.18 -4.76 8.46 71.24 0.60 -4.16 16 10 O -0.48 -22.37 17.28 -2.95 -0.05 -22.42 16 11 C -0.13 -6.27 5.51 -11.52 -0.06 -6.34 16 12 H 0.10 4.65 8.00 -2.39 -0.02 4.63 16 13 C 0.03 1.76 5.17 -11.51 -0.06 1.70 16 14 H 0.05 3.04 7.93 -2.39 -0.02 3.02 16 15 C -0.49 -27.43 7.36 25.60 0.19 -27.24 16 16 H 0.06 3.40 5.92 -2.91 -0.02 3.39 16 17 C 0.02 1.04 5.46 84.65 0.46 1.50 16 18 N -0.92 -55.24 13.20 21.45 0.28 -54.96 16 19 Si 0.94 44.73 29.54 68.60 2.03 46.76 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.13 -5.61 2.70 -52.18 -0.14 -5.76 16 24 C -0.09 -3.77 7.71 71.98 0.56 -3.21 16 25 C -0.10 -3.74 9.85 71.98 0.71 -3.03 16 26 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.13 0.36 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.43 4.08 8.94 -92.71 -0.83 3.25 16 30 H 0.10 2.54 7.31 -2.39 -0.02 2.52 16 31 H 0.10 2.27 8.12 -2.39 -0.02 2.25 16 32 H 0.12 2.40 7.32 -2.39 -0.02 2.38 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.57 8.04 -2.38 -0.02 1.55 16 36 H 0.08 3.96 2.98 -2.39 -0.01 3.95 16 37 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.79 7.90 -2.38 -0.02 1.77 16 39 H 0.07 2.21 8.09 -2.38 -0.02 2.19 16 Total: -1.00 -77.27 329.01 4.86 -72.40 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.25 Total: 14.84 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.24 Total: -5.13 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -3.45 Total: -81.78 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: 0.81 Total: -47.09 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -77.27 4.86 -72.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004844178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.445 kcal (2) G-P(sol) polarization free energy of solvation -77.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds