Wall clock time and date at job start Tue Mar 31 2020 01:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86795 * 120.00446 * 2 1 4 4 H 1.48492 * 109.47120 * 275.41247 * 3 2 1 5 5 H 1.48505 * 109.46888 * 35.41057 * 3 2 1 6 6 H 1.48497 * 109.47503 * 155.40811 * 3 2 1 7 7 C 1.39940 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 341.73412 * 7 2 1 9 9 C 1.41402 * 119.99938 * 161.73448 * 7 2 1 10 10 C 1.40768 * 120.21653 * 330.20155 * 9 7 2 11 11 C 1.37631 * 119.85650 * 180.02562 * 10 9 7 12 12 C 1.38561 * 120.30486 * 359.71484 * 11 10 9 13 13 C 1.39118 * 120.44141 * 0.55941 * 12 11 10 14 14 O 1.35899 * 119.93017 * 179.71735 * 13 12 11 15 15 C 1.42904 * 117.00262 * 359.73143 * 14 13 12 16 16 C 1.52994 * 109.47401 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.47344 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47288 * 180.02562 * 17 16 15 19 19 C 1.38231 * 119.99897 * 269.72524 * 18 17 16 20 20 C 1.38233 * 120.00105 * 179.76854 * 19 18 17 21 21 C 1.38241 * 120.00074 * 0.50325 * 20 19 18 22 22 C 1.38234 * 119.99575 * 359.75186 * 21 20 19 23 23 C 1.38234 * 119.99882 * 90.00138 * 18 17 16 24 24 C 1.38137 * 120.13432 * 359.44471 * 13 12 11 25 25 H 0.96994 * 119.99668 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.06894 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.84464 * 180.02562 * 11 10 9 28 28 H 1.07995 * 119.77804 * 180.30272 * 12 11 10 29 29 H 1.09000 * 109.46886 * 299.99953 * 15 14 13 30 30 H 1.08998 * 109.46872 * 59.99256 * 15 14 13 31 31 H 1.09000 * 109.47252 * 299.99961 * 16 15 14 32 32 H 1.08998 * 109.47017 * 59.99746 * 16 15 14 33 33 H 1.09000 * 109.47023 * 300.00234 * 17 16 15 34 34 H 1.08998 * 109.47163 * 59.99968 * 17 16 15 35 35 H 1.08003 * 120.00323 * 359.97438 * 19 18 17 36 36 H 1.08000 * 120.00304 * 180.23192 * 20 19 18 37 37 H 1.07996 * 120.00249 * 179.72857 * 21 20 19 38 38 H 1.07998 * 119.99907 * 179.97438 * 22 21 20 39 39 H 1.07996 * 120.00141 * 359.97438 * 23 18 17 40 40 H 1.07999 * 120.15121 * 180.24743 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5017 2.6169 0.8113 6 1 3.5924 1.4098 0.5826 7 6 2.0079 -1.2120 0.0005 8 1 1.5086 -2.1235 0.2941 9 6 3.3685 -1.2431 -0.3833 10 6 3.8631 -0.3114 -1.3154 11 6 5.1886 -0.3487 -1.6841 12 6 6.0399 -1.2955 -1.1375 13 6 5.5632 -2.2258 -0.2195 14 8 6.4061 -3.1534 0.3057 15 6 7.7653 -3.1179 -0.1341 16 6 8.5556 -4.2282 0.5613 17 6 10.0106 -4.1906 0.0899 18 6 10.7888 -5.2846 0.7744 19 6 11.4203 -5.0341 1.9783 20 6 12.1302 -6.0389 2.6086 21 6 12.2173 -7.2913 2.0299 22 6 11.5902 -7.5403 0.8234 23 6 10.8759 -6.5369 0.1956 24 6 4.2361 -2.2049 0.1634 25 1 -0.4849 0.8400 -0.0004 26 1 3.2036 0.4306 -1.7410 27 1 5.5679 0.3664 -2.3990 28 1 7.0796 -1.3140 -1.4292 29 1 7.8019 -3.2667 -1.2133 30 1 8.2024 -2.1509 0.1143 31 1 8.5189 -4.0790 1.6404 32 1 8.1185 -5.1954 0.3132 33 1 10.0469 -4.3400 -0.9892 34 1 10.4479 -3.2234 0.3377 35 1 11.3564 -4.0543 2.4281 36 1 12.6205 -5.8443 3.5510 37 1 12.7756 -8.0751 2.5202 38 1 11.6586 -8.5186 0.3711 39 1 10.3859 -6.7314 -0.7469 40 1 3.8667 -2.9244 0.8791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062152110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:44 Heat of formation + Delta-G solvation = -28.880208 kcal Electronic energy + Delta-G solvation = -20029.315337 eV Core-core repulsion = 16965.411956 eV Total energy + Delta-G solvation = -3063.903381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.136 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -40.73797 -40.12696 -38.39695 -35.70952 -35.24272 -32.22875 -31.84904 -31.74132 -30.34668 -27.35793 -26.74636 -23.58783 -23.43726 -23.12170 -22.03602 -21.61199 -19.77720 -18.08408 -17.64284 -17.17232 -17.11252 -16.66100 -16.30166 -16.02098 -15.91192 -15.07774 -14.67090 -14.58130 -14.38139 -14.19563 -14.05462 -13.76605 -13.69333 -13.31627 -13.02106 -12.76348 -12.72614 -12.44169 -12.30771 -12.06442 -11.76111 -11.73751 -11.66688 -11.40906 -11.31761 -11.03617 -9.79643 -9.61626 -9.59104 -8.94056 -8.89684 -6.57767 0.45801 0.52475 0.72859 0.88237 1.27037 1.41777 1.50770 2.13471 2.40509 2.57035 2.93170 3.46563 3.77962 3.88506 4.09651 4.16603 4.19341 4.29231 4.33480 4.36800 4.41324 4.46548 4.53563 4.60765 4.67428 4.75973 4.78013 4.91448 4.93997 5.05261 5.07563 5.16135 5.22371 5.28390 5.52196 5.60202 5.65238 5.66415 5.72795 5.75281 5.89921 5.99855 6.15726 6.27788 6.63837 6.73574 6.87568 8.15319 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.041331 B = 0.002565 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.293880 B =10913.549350 C =11056.566677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.048 3.952 3 Si 0.971 3.029 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.485 4.485 8 H 0.054 0.946 9 C 0.103 3.897 10 C -0.278 4.278 11 C -0.047 4.047 12 C -0.306 4.306 13 C 0.156 3.844 14 O -0.341 6.341 15 C 0.056 3.944 16 C -0.103 4.103 17 C -0.070 4.070 18 C -0.093 4.093 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.135 4.135 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.269 4.269 25 H 0.296 0.704 26 H 0.102 0.898 27 H 0.138 0.862 28 H 0.140 0.860 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.353 -7.318 0.570 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.167 4.167 3 Si 0.793 3.207 4 H -0.177 1.177 5 H -0.202 1.202 6 H -0.179 1.179 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.101 3.899 10 C -0.297 4.297 11 C -0.065 4.065 12 C -0.326 4.326 13 C 0.111 3.889 14 O -0.255 6.255 15 C -0.019 4.019 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.093 4.093 19 C -0.149 4.149 20 C -0.147 4.147 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.149 4.149 24 C -0.289 4.289 25 H 0.106 0.894 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.157 0.843 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.029 -7.396 0.724 25.151 hybrid contribution -0.494 0.382 0.098 0.632 sum 23.534 -7.014 0.822 24.571 Atomic orbital electron populations 1.69715 1.09213 1.31706 1.36430 1.26879 0.95396 1.04364 0.90052 0.85418 0.79459 0.76015 0.79775 1.17708 1.20249 1.17861 1.19449 0.94324 0.95809 1.41832 0.92761 1.17590 0.92098 0.90880 0.89378 1.21121 0.97244 1.05727 1.05617 1.20855 0.92298 0.96516 0.96843 1.20931 1.00992 1.02841 1.07787 1.18826 0.89219 0.88427 0.92438 1.85968 1.21411 1.52270 1.65891 1.22959 0.79003 1.00388 0.99544 1.21431 0.94147 0.97773 1.00697 1.20453 0.91953 0.97629 1.00665 1.19990 0.98146 0.95386 0.95735 1.21332 0.98036 1.00255 0.95252 1.21454 0.99208 0.93461 1.00575 1.21475 1.00100 0.97599 0.96082 1.21453 0.97497 0.99803 0.95940 1.21334 0.99679 0.93008 1.00852 1.20364 0.91696 1.07601 1.09226 0.89356 0.87980 0.84456 0.84274 0.91299 0.91337 0.91564 0.91564 0.89536 0.89540 0.85175 0.84444 0.84315 0.84442 0.85173 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.93 13.93 21.83 0.30 -46.62 16 2 C 0.05 2.64 5.40 85.25 0.46 3.10 16 3 Si 0.97 43.25 24.52 68.60 1.68 44.93 16 4 H -0.25 -10.41 6.71 99.48 0.67 -9.74 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 6 H -0.25 -11.69 6.86 99.48 0.68 -11.01 16 7 C -0.48 -28.30 9.57 23.46 0.22 -28.07 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 C 0.10 5.54 5.10 -21.31 -0.11 5.43 16 10 C -0.28 -13.34 7.17 22.75 0.16 -13.18 16 11 C -0.05 -1.91 10.02 22.20 0.22 -1.68 16 12 C -0.31 -11.88 9.05 22.56 0.20 -11.68 16 13 C 0.16 6.82 6.67 22.46 0.15 6.97 16 14 O -0.34 -13.05 10.13 -92.41 -0.94 -13.99 16 15 C 0.06 1.48 4.74 71.98 0.34 1.82 16 16 C -0.10 -2.24 5.57 30.59 0.17 -2.07 16 17 C -0.07 -1.15 5.35 29.85 0.16 -0.99 16 18 C -0.09 -1.66 5.13 -19.87 -0.10 -1.76 16 19 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 20 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.77 16 22 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 23 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 24 C -0.27 -13.70 9.73 22.82 0.22 -13.47 16 25 H 0.30 14.63 8.30 -92.71 -0.77 13.86 16 26 H 0.10 4.81 4.73 -2.91 -0.01 4.80 16 27 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.14 4.28 6.27 -2.91 -0.02 4.26 16 29 H 0.07 1.67 7.67 -2.39 -0.02 1.65 16 30 H 0.07 1.66 7.64 -2.39 -0.02 1.65 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 34 H 0.09 1.24 8.08 -2.39 -0.02 1.22 16 35 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 38 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -64.87 333.81 5.21 -59.66 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.95 Total: 20.99 kcal Atomic # 6 Polarization: -68.18 SS G_CDS: 3.21 Total: -64.97 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.30 Total: -46.62 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.94 Total: -13.99 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.68 Total: 44.93 kcal Total: -64.87 5.21 -59.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062152110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.780 kcal (2) G-P(sol) polarization free energy of solvation -64.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds