Wall clock time and date at job start Tue Mar 31 2020 03:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00269 * 2 1 4 4 C 1.53000 * 109.47034 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47059 * 64.99786 * 4 3 2 6 6 C 1.46903 * 110.99812 * 189.99647 * 5 4 3 7 7 C 1.50710 * 109.46962 * 72.48197 * 6 5 4 8 8 O 1.21297 * 119.99747 * 358.46844 * 7 6 5 9 9 N 1.34774 * 120.00123 * 178.46576 * 7 6 5 10 10 C 1.37101 * 120.00140 * 180.02562 * 9 7 6 11 11 H 1.07998 * 119.99595 * 359.97438 * 10 9 7 12 12 C 1.38942 * 119.99817 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00377 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99842 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46971 * 90.00099 * 14 12 10 16 16 H 1.48500 * 109.47203 * 210.00006 * 14 12 10 17 17 H 1.48498 * 109.47322 * 330.00163 * 14 12 10 18 18 C 1.46902 * 111.00295 * 66.04585 * 5 4 3 19 19 C 1.50690 * 109.47221 * 200.34296 * 18 5 4 20 20 C 1.34512 * 125.78973 * 84.50257 * 19 18 5 21 21 C 1.41384 * 106.84419 * 179.97438 * 20 19 18 22 22 C 1.34511 * 106.83866 * 0.02562 * 21 20 19 23 23 O 1.34302 * 108.42256 * 359.73350 * 22 21 20 24 24 H 1.08997 * 109.47227 * 300.00241 * 1 2 3 25 25 H 1.09000 * 109.46484 * 60.00178 * 1 2 3 26 26 H 1.09001 * 109.47135 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47231 * 59.99639 * 3 2 1 28 28 H 1.08999 * 109.46821 * 299.99646 * 3 2 1 29 29 H 1.09001 * 109.47049 * 304.99427 * 4 3 2 30 30 H 1.09001 * 109.47066 * 184.99703 * 4 3 2 31 31 H 1.08996 * 109.47413 * 192.47889 * 6 5 4 32 32 H 1.08999 * 109.47611 * 312.48563 * 6 5 4 33 33 H 0.97002 * 119.99670 * 0.02562 * 9 7 6 34 34 H 0.97001 * 120.00337 * 180.02562 * 13 12 10 35 35 H 1.09003 * 109.47048 * 80.34354 * 18 5 4 36 36 H 1.08998 * 109.46664 * 320.34905 * 18 5 4 37 37 H 1.07997 * 126.57907 * 0.03461 * 20 19 18 38 38 H 1.07998 * 126.58187 * 179.97438 * 21 20 19 39 39 H 1.08000 * 125.78855 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9779 0.5621 -1.2542 6 6 5.4036 0.2131 -1.1947 7 6 5.5931 -0.9722 -0.2834 8 8 4.6383 -1.4591 0.2846 9 7 6.8232 -1.4910 -0.0995 10 6 6.9955 -2.5696 0.7292 11 1 6.1454 -3.0031 1.2350 12 6 8.2638 -3.1041 0.9192 13 7 9.2983 -2.5763 0.3042 14 14 8.4986 -4.5732 2.0488 15 1 8.3586 -5.8272 1.2657 16 1 9.8520 -4.5183 2.6575 17 1 7.4719 -4.5421 3.1213 18 6 3.6970 1.4344 -2.4023 19 6 3.6848 0.6135 -3.6659 20 6 2.6353 -0.0785 -4.1443 21 6 3.0632 -0.6958 -5.3422 22 6 4.3489 -0.3445 -5.5238 23 8 4.7185 0.4530 -4.5084 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6887 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8508 0.5684 0.8428 30 1 3.9786 2.1764 0.0902 31 1 5.7585 -0.0371 -2.1945 32 1 5.9697 1.0613 -0.8099 33 1 7.5868 -1.1014 -0.5534 34 1 10.1837 -2.9497 0.4365 35 1 4.4692 2.2004 -2.4741 36 1 2.7252 1.9096 -2.2683 37 1 1.6537 -0.1484 -3.6994 38 1 2.4717 -1.3286 -5.9871 39 1 4.9760 -0.6480 -6.3490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076668772.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:33 Heat of formation + Delta-G solvation = -46.977567 kcal Electronic energy + Delta-G solvation = -22555.653212 eV Core-core repulsion = 19080.115807 eV Total energy + Delta-G solvation = -3475.537404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33498 -38.76362 -37.57247 -36.18959 -33.74269 -32.78308 -31.15332 -30.86516 -29.69290 -27.05395 -26.05800 -24.98028 -23.63693 -21.55482 -21.27591 -20.12668 -19.05130 -17.76523 -17.30210 -16.47300 -16.14789 -15.86677 -15.70110 -15.13925 -14.62031 -14.60045 -14.22501 -13.94069 -13.58685 -13.46306 -12.95829 -12.61659 -12.52737 -12.29905 -12.11913 -11.94394 -11.63521 -11.45985 -11.39797 -11.16447 -10.86056 -10.58699 -10.32614 -10.12452 -9.69571 -9.40994 -9.36091 -8.36454 -8.29630 -7.86254 -7.78984 -6.31944 -3.72018 1.90839 2.82458 3.16376 3.24349 3.31921 3.38229 4.00488 4.04238 4.11806 4.32426 4.78750 5.03720 5.09723 5.18088 5.24962 5.28806 5.33217 5.40051 5.41998 5.49386 5.52382 5.61439 5.68098 5.81813 5.90229 5.98927 6.00193 6.14370 6.27504 6.31758 6.40113 6.70390 7.20558 7.26044 7.38403 7.53937 7.64517 8.16923 8.73772 9.29156 9.66286 10.19589 10.86237 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.005080 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.236130 B = 5509.996331 C = 6708.649755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.069 3.931 4 C 0.057 3.943 5 N -0.501 5.501 6 C 0.044 3.956 7 C 0.446 3.554 8 O -0.564 6.564 9 N -0.570 5.570 10 C -0.294 4.294 11 H 0.102 0.898 12 C 0.020 3.980 13 N -0.905 5.905 14 Si 0.928 3.072 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.270 1.270 18 C 0.130 3.870 19 C -0.001 4.001 20 C -0.188 4.188 21 C -0.216 4.216 22 C -0.045 4.045 23 O -0.178 6.178 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.391 0.609 34 H 0.270 0.730 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 10.641 -7.928 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C -0.008 4.008 4 C -0.071 4.071 5 N -0.225 5.225 6 C -0.087 4.087 7 C 0.231 3.769 8 O -0.447 6.447 9 N -0.207 5.207 10 C -0.423 4.423 11 H 0.120 0.880 12 C -0.181 4.181 13 N -0.547 5.547 14 Si 0.756 3.244 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.195 1.195 18 C 0.002 3.998 19 C -0.051 4.051 20 C -0.208 4.208 21 C -0.235 4.235 22 C -0.112 4.112 23 O -0.075 6.075 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.125 0.875 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.224 0.776 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.120 0.880 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.094 9.789 -7.522 17.282 hybrid contribution 0.783 0.197 0.118 0.816 sum -11.311 9.986 -7.404 16.807 Atomic orbital electron populations 1.22704 0.82703 1.02436 0.98904 1.88244 1.17790 1.26292 1.94958 1.22553 0.93859 0.85523 0.98914 1.22231 0.93288 0.97622 0.93926 1.61404 1.17572 1.42201 1.01323 1.21928 0.87883 0.97728 1.01141 1.19724 0.84093 0.86849 0.86242 1.90564 1.39647 1.62978 1.51477 1.41860 1.07097 1.29290 1.42484 1.19686 0.94546 1.06469 1.21645 0.87987 1.25224 0.95025 0.99358 0.98465 1.69619 0.99569 1.41954 1.43554 0.85884 0.77448 0.81059 0.80039 1.20502 1.21048 1.19477 1.20544 1.02433 0.91647 0.85186 1.22224 0.85880 1.03487 0.93510 1.21473 1.00606 1.01494 0.97219 1.21800 0.96161 1.05610 0.99933 1.23935 0.96716 0.97374 0.93224 1.84002 1.38598 1.54865 1.29986 0.94849 0.94843 0.89925 0.93427 0.94019 0.87467 0.93943 0.89409 0.93211 0.77649 0.92048 0.93230 0.88024 0.83785 0.83823 0.78454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.36 -5.96 10.65 -35.23 -0.38 -6.33 16 3 C 0.07 0.93 6.02 37.16 0.22 1.15 16 4 C 0.06 0.89 4.96 -3.83 -0.02 0.87 16 5 N -0.50 -8.63 4.00 -237.52 -0.95 -9.58 16 6 C 0.04 0.84 5.28 -4.97 -0.03 0.82 16 7 C 0.45 10.99 7.46 -10.98 -0.08 10.91 16 8 O -0.56 -15.82 14.45 5.54 0.08 -15.74 16 9 N -0.57 -15.00 5.29 -10.96 -0.06 -15.05 16 10 C -0.29 -8.44 9.68 -14.93 -0.14 -8.59 16 11 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 12 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 13 N -0.90 -25.30 13.05 55.50 0.72 -24.58 16 14 Si 0.93 21.66 29.55 -169.99 -5.02 16.64 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.13 1.77 5.38 -4.98 -0.03 1.75 16 19 C 0.00 -0.01 6.17 -35.63 -0.22 -0.23 16 20 C -0.19 -2.75 10.81 -39.70 -0.43 -3.18 16 21 C -0.22 -2.86 10.91 -39.70 -0.43 -3.29 16 22 C -0.04 -0.58 12.09 29.41 0.36 -0.22 16 23 O -0.18 -2.73 10.27 5.70 0.06 -2.68 16 24 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.47 6.08 -51.93 -0.32 0.15 16 29 H 0.11 2.09 6.35 -51.93 -0.33 1.76 16 30 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.09 1.66 7.05 -51.93 -0.37 1.29 16 32 H 0.05 0.84 8.05 -51.93 -0.42 0.42 16 33 H 0.39 9.89 7.90 -40.82 -0.32 9.57 16 34 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.05 0.61 7.99 -51.93 -0.41 0.19 16 36 H 0.10 1.16 5.81 -51.93 -0.30 0.86 16 37 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 38 H 0.14 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.20 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -34.36 333.39 -5.66 -40.02 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.36 Total: 10.37 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 0.22 Total: 1.91 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.28 Total: -49.22 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.24 Total: -24.75 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.36 -5.66 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076668772.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.953 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds