Wall clock time and date at job start Tue Mar 31 2020 03:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00224 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99948 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47358 * 89.99683 * 9 7 5 11 11 H 1.48498 * 109.46924 * 210.00000 * 9 7 5 12 12 H 1.48500 * 109.47029 * 329.99851 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 C 1.52998 * 109.47348 * 179.72561 * 15 13 3 17 17 N 1.46496 * 109.47238 * 179.97438 * 16 15 13 18 18 C 1.33880 * 122.76508 * 269.71642 * 17 16 15 19 19 O 1.21228 * 125.39607 * 359.97241 * 18 17 16 20 20 C 1.51315 * 109.20546 * 179.84251 * 18 17 16 21 21 C 1.54229 * 103.55570 * 0.38237 * 20 18 17 22 22 C 1.33878 * 122.76195 * 89.99722 * 17 16 15 23 23 O 1.21227 * 125.39450 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 25 25 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 27 27 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 28 28 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 29 29 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 30 30 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 31 31 H 0.96997 * 120.00127 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 33 33 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 34 34 H 1.09000 * 109.46986 * 300.00089 * 16 15 13 35 35 H 1.09002 * 109.46857 * 60.00224 * 16 15 13 36 36 H 1.09000 * 110.79343 * 241.77416 * 20 18 17 37 37 H 1.08999 * 110.55317 * 118.87285 * 20 18 17 38 38 H 1.09008 * 110.60454 * 241.26378 * 21 20 18 39 39 H 1.08990 * 110.60495 * 118.30031 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 5.3913 2.1821 -3.2578 9 14 3.0131 3.4348 -3.9293 10 1 3.1166 4.8551 -3.5083 11 1 3.4061 3.3115 -5.3560 12 1 1.6134 2.9689 -3.7594 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 6 2.3295 2.2413 3.6352 17 7 2.0842 1.5512 4.9039 18 6 0.9050 1.5949 5.5363 19 8 -0.0768 2.1926 5.1509 20 6 0.9909 0.7774 6.8068 21 6 2.4424 0.2562 6.8038 22 6 3.0224 0.8293 5.5292 23 8 4.1568 0.6611 5.1362 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.5819 1.6876 -2.0284 30 1 2.0958 3.1409 -1.1385 31 1 5.7172 2.5719 -4.0840 32 1 0.9422 1.0169 2.5319 33 1 2.6175 0.4159 2.5281 34 1 3.3787 2.5307 3.5755 35 1 1.7032 3.1317 3.5794 36 1 0.2851 -0.0529 6.7811 37 1 0.8106 1.4057 7.6790 38 1 2.4587 -0.8334 6.7767 39 1 2.9850 0.6274 7.6731 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:19 Heat of formation + Delta-G solvation = -99.919587 kcal Electronic energy + Delta-G solvation = -22463.774950 eV Core-core repulsion = 18985.941807 eV Total energy + Delta-G solvation = -3477.833143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.06774 -39.23474 -38.74914 -36.08764 -35.49812 -34.28131 -32.72009 -30.80069 -30.20610 -27.73344 -26.46740 -24.68200 -22.99464 -22.60192 -21.95099 -19.59607 -18.45699 -17.55974 -17.13867 -16.92317 -16.65913 -16.19378 -15.54567 -15.11602 -14.76563 -14.44114 -14.27167 -14.18742 -14.02584 -13.50274 -13.47265 -13.10225 -12.83809 -12.51785 -12.33105 -12.17130 -11.82479 -11.75726 -11.45855 -11.21505 -10.97087 -10.82697 -10.68394 -10.49967 -10.23654 -10.15433 -9.97267 -9.53515 -9.06415 -8.57730 -7.75024 -6.07344 -4.06273 1.27495 2.29516 2.47242 3.28395 3.30117 3.36024 3.38001 3.76634 3.78641 3.92465 4.08174 4.40652 4.45595 4.87802 4.94638 4.97399 5.06162 5.18793 5.21265 5.23248 5.25880 5.38089 5.47034 5.55141 5.66071 5.76786 5.96210 5.99110 6.13722 6.39450 6.65364 6.70443 6.94525 7.09607 7.32490 7.55204 7.61859 8.21340 8.47663 8.89845 8.97462 9.52677 11.06059 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025638 B = 0.004074 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.845549 B = 6871.676310 C = 7211.475312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.591 5.591 4 C 0.216 3.784 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.515 3.485 14 O -0.540 6.540 15 C -0.154 4.154 16 C 0.114 3.886 17 N -0.574 5.574 18 C 0.524 3.476 19 O -0.480 6.480 20 C -0.157 4.157 21 C -0.157 4.157 22 C 0.521 3.479 23 O -0.474 6.474 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.361 -7.447 20.295 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.322 5.322 4 C 0.096 3.904 5 C -0.568 4.568 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.301 3.699 14 O -0.418 6.418 15 C -0.195 4.195 16 C -0.007 4.007 17 N -0.317 5.317 18 C 0.312 3.688 19 O -0.351 6.351 20 C -0.197 4.197 21 C -0.196 4.196 22 C 0.310 3.690 23 O -0.344 6.344 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.913 -6.548 19.665 23.424 hybrid contribution -0.421 0.411 -0.774 0.972 sum -11.334 -6.137 18.891 22.869 Atomic orbital electron populations 1.22232 0.96692 1.01603 1.02298 1.21455 0.93425 0.83801 1.03149 1.47915 1.63866 1.13399 1.06996 1.19664 0.97362 0.93399 0.80000 1.21329 0.95322 1.32950 1.07154 0.90741 1.24855 0.94996 0.95792 0.97342 1.69899 1.15140 1.44997 1.23531 0.86850 0.81450 0.81633 0.79753 1.19889 1.21062 1.19088 1.19970 0.78343 0.86778 0.84810 1.90684 1.45662 1.18241 1.87240 1.21969 1.03697 1.00310 0.93519 1.21562 1.05091 0.95040 0.78994 1.46868 1.14295 1.47065 1.23486 1.20852 0.81759 0.80216 0.85946 1.90801 1.32557 1.41801 1.69951 1.22474 0.98083 1.01730 0.97380 1.22479 0.95612 1.04218 0.97340 1.20873 0.84723 0.77366 0.86061 1.90834 1.17230 1.56835 1.69514 0.92142 0.91952 0.92975 0.89603 0.91487 0.95206 0.94544 0.92561 0.89004 0.88772 0.87747 0.87975 0.86157 0.86250 0.86139 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.11 1.67 5.93 -4.05 -0.02 1.65 16 3 N -0.59 -12.31 2.46 -175.06 -0.43 -12.74 16 4 C 0.22 5.36 4.23 -5.19 -0.02 5.34 16 5 C -0.53 -15.43 9.94 -34.44 -0.34 -15.77 16 6 H 0.07 2.39 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.52 10.62 7.67 -10.98 -0.08 10.53 16 14 O -0.54 -13.32 15.56 5.56 0.09 -13.24 16 15 C -0.15 -2.33 4.58 -27.88 -0.13 -2.46 16 16 C 0.11 1.66 4.85 -4.04 -0.02 1.64 16 17 N -0.57 -6.47 2.55 -115.34 -0.29 -6.77 16 18 C 0.52 5.19 8.08 -11.08 -0.09 5.10 16 19 O -0.48 -6.53 17.47 5.60 0.10 -6.43 16 20 C -0.16 -0.70 7.03 -26.94 -0.19 -0.89 16 21 C -0.16 -0.73 7.03 -26.94 -0.19 -0.92 16 22 C 0.52 5.42 8.08 -11.09 -0.09 5.33 16 23 O -0.47 -6.94 17.48 5.60 0.10 -6.84 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.65 7.23 -51.93 -0.38 0.28 16 27 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 28 H 0.07 0.91 6.43 -51.93 -0.33 0.57 16 29 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 30 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.09 1.22 7.20 -51.93 -0.37 0.85 16 33 H 0.09 1.35 7.39 -51.93 -0.38 0.97 16 34 H 0.10 1.68 7.79 -51.93 -0.40 1.28 16 35 H 0.10 1.56 7.78 -51.93 -0.40 1.15 16 36 H 0.12 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.12 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 331.90 15.07 5.00 5.00 Total: -1.00 -37.78 331.90 -5.78 -43.56 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.55 Total: -2.25 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -0.89 Total: 9.77 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.05 Total: -46.76 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: 0.28 Total: -26.51 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.78 -5.78 -43.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.360 kcal (2) G-P(sol) polarization free energy of solvation -37.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds