Wall clock time and date at job start Tue Mar 31 2020 03:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00224 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99948 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47358 * 89.99683 * 9 7 5 11 11 H 1.48498 * 109.46924 * 210.00000 * 9 7 5 12 12 H 1.48500 * 109.47029 * 329.99851 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 C 1.52998 * 109.47348 * 179.72561 * 15 13 3 17 17 N 1.46496 * 109.47238 * 179.97438 * 16 15 13 18 18 C 1.33880 * 122.76508 * 269.71642 * 17 16 15 19 19 O 1.21228 * 125.39607 * 359.97241 * 18 17 16 20 20 C 1.51315 * 109.20546 * 179.84251 * 18 17 16 21 21 C 1.54229 * 103.55570 * 0.38237 * 20 18 17 22 22 C 1.33878 * 122.76195 * 89.99722 * 17 16 15 23 23 O 1.21227 * 125.39450 * 359.97438 * 22 17 16 24 24 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 25 25 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46887 * 300.00656 * 1 2 3 27 27 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 28 28 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 29 29 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 30 30 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 31 31 H 0.96997 * 120.00127 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 33 33 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 34 34 H 1.09000 * 109.46986 * 300.00089 * 16 15 13 35 35 H 1.09002 * 109.46857 * 60.00224 * 16 15 13 36 36 H 1.09000 * 110.79343 * 241.77416 * 20 18 17 37 37 H 1.08999 * 110.55317 * 118.87285 * 20 18 17 38 38 H 1.09008 * 110.60454 * 241.26378 * 21 20 18 39 39 H 1.08990 * 110.60495 * 118.30031 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 5.3913 2.1821 -3.2578 9 14 3.0131 3.4348 -3.9293 10 1 3.1166 4.8551 -3.5083 11 1 3.4061 3.3115 -5.3560 12 1 1.6134 2.9689 -3.7594 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 6 2.3295 2.2413 3.6352 17 7 2.0842 1.5512 4.9039 18 6 0.9050 1.5949 5.5363 19 8 -0.0768 2.1926 5.1509 20 6 0.9909 0.7774 6.8068 21 6 2.4424 0.2562 6.8038 22 6 3.0224 0.8293 5.5292 23 8 4.1568 0.6611 5.1362 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.5819 1.6876 -2.0284 30 1 2.0958 3.1409 -1.1385 31 1 5.7172 2.5719 -4.0840 32 1 0.9422 1.0169 2.5319 33 1 2.6175 0.4159 2.5281 34 1 3.3787 2.5307 3.5755 35 1 1.7032 3.1317 3.5794 36 1 0.2851 -0.0529 6.7811 37 1 0.8106 1.4057 7.6790 38 1 2.4587 -0.8334 6.7767 39 1 2.9850 0.6274 7.6731 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103208038.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:17 Heat of formation + Delta-G solvation = -128.146566 kcal Electronic energy + Delta-G solvation = -22464.998963 eV Core-core repulsion = 18985.941807 eV Total energy + Delta-G solvation = -3479.057156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.88169 -40.86962 -39.64573 -37.20698 -36.95692 -35.25880 -34.79234 -32.20598 -31.45154 -29.53453 -27.07588 -26.08501 -24.44829 -23.66638 -23.27246 -20.45881 -20.02374 -19.15360 -18.63532 -17.96517 -17.54459 -17.48441 -17.16881 -16.63735 -16.06081 -15.68904 -15.28922 -15.06597 -14.90545 -14.78842 -14.66779 -14.58899 -14.25563 -13.83306 -13.59461 -13.44226 -13.38929 -13.18205 -12.59892 -12.56522 -12.38695 -12.06831 -12.05007 -11.92958 -11.77723 -11.66998 -11.07267 -11.04905 -10.86246 -10.72743 -9.50912 -8.37117 -6.42880 0.50726 1.29731 1.34376 1.41867 1.43400 1.65180 1.70546 2.27173 2.28649 2.96921 3.23762 3.29746 3.51703 3.67994 3.70906 3.78977 4.01624 4.23983 4.25752 4.31173 4.36161 4.46738 4.58728 4.72642 4.77459 4.82404 4.86584 4.93625 4.95812 4.95933 4.98957 5.33178 5.42594 5.57719 5.84344 6.19311 6.35119 6.57591 6.59647 6.73248 7.15696 7.30096 8.80040 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025638 B = 0.004074 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.845549 B = 6871.676310 C = 7211.475312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.598 5.598 4 C 0.225 3.775 5 C -0.539 4.539 6 H 0.027 0.973 7 C 0.011 3.989 8 N -0.945 5.945 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.238 1.238 13 C 0.503 3.497 14 O -0.592 6.592 15 C -0.133 4.133 16 C 0.117 3.883 17 N -0.579 5.579 18 C 0.518 3.482 19 O -0.522 6.522 20 C -0.136 4.136 21 C -0.137 4.137 22 C 0.514 3.486 23 O -0.527 6.527 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.269 0.731 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.281 -9.123 22.275 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.329 5.329 4 C 0.103 3.897 5 C -0.577 4.577 6 H 0.045 0.955 7 C -0.187 4.187 8 N -0.585 5.585 9 Si 0.772 3.228 10 H -0.202 1.202 11 H -0.197 1.197 12 H -0.161 1.161 13 C 0.291 3.709 14 O -0.474 6.474 15 C -0.174 4.174 16 C -0.005 4.005 17 N -0.321 5.321 18 C 0.310 3.690 19 O -0.396 6.396 20 C -0.175 4.175 21 C -0.176 4.176 22 C 0.306 3.694 23 O -0.402 6.402 24 H 0.068 0.932 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.874 -8.291 21.692 27.051 hybrid contribution 0.578 0.894 -1.331 1.705 sum -13.296 -7.397 20.360 25.417 Atomic orbital electron populations 1.22148 0.93744 1.03793 1.02055 1.21796 0.95757 0.80995 1.03950 1.48059 1.63759 1.15250 1.05809 1.19324 0.94902 0.93042 0.82430 1.21550 0.97055 1.32307 1.06832 0.95508 1.25866 0.96765 0.97126 0.98908 1.70052 1.17448 1.46506 1.24478 0.85698 0.80405 0.78930 0.77815 1.20202 1.19743 1.16097 1.20922 0.77078 0.86459 0.86408 1.90647 1.47877 1.20709 1.88134 1.21835 1.05399 0.99781 0.90344 1.21189 1.03067 0.95125 0.81154 1.47083 1.15698 1.47029 1.22334 1.21916 0.80239 0.79687 0.87148 1.90784 1.33790 1.43765 1.71310 1.22613 0.98461 1.01901 0.94536 1.22619 0.95170 1.05576 0.94214 1.22017 0.83750 0.76220 0.87412 1.90813 1.19473 1.58712 1.71159 0.93225 0.88476 0.92379 0.90610 0.89007 0.93109 0.96354 0.92184 0.86286 0.87677 0.90525 0.89361 0.82990 0.83421 0.83199 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 10.24 71.98 0.74 -2.94 16 2 C 0.10 2.96 5.93 86.38 0.51 3.47 16 3 N -0.60 -25.26 2.46 -826.15 -2.03 -27.29 16 4 C 0.23 11.35 4.23 85.63 0.36 11.71 16 5 C -0.54 -32.75 9.94 25.60 0.25 -32.49 16 6 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.94 -61.10 13.96 21.44 0.30 -60.80 16 9 Si 0.95 45.50 27.47 68.60 1.88 47.39 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 13 C 0.50 21.41 7.67 87.66 0.67 22.09 16 14 O -0.59 -30.91 15.56 -3.04 -0.05 -30.95 16 15 C -0.13 -4.03 4.58 29.85 0.14 -3.89 16 16 C 0.12 3.56 4.85 86.38 0.42 3.98 16 17 N -0.58 -12.58 2.55 -756.67 -1.93 -14.51 16 18 C 0.52 9.12 8.08 87.99 0.71 9.83 16 19 O -0.52 -13.57 17.47 -2.87 -0.05 -13.62 16 20 C -0.14 -0.53 7.03 30.46 0.21 -0.31 16 21 C -0.14 -0.64 7.03 30.46 0.21 -0.43 16 22 C 0.51 9.94 8.08 87.99 0.71 10.65 16 23 O -0.53 -15.62 17.48 -2.87 -0.05 -15.67 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 1.28 7.23 -2.39 -0.02 1.27 16 27 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 28 H 0.09 2.32 6.43 -2.38 -0.02 2.30 16 29 H 0.05 2.34 7.13 -2.39 -0.02 2.33 16 30 H 0.02 0.99 6.85 -2.39 -0.02 0.98 16 31 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 32 H 0.12 2.96 7.20 -2.39 -0.02 2.94 16 33 H 0.11 2.97 7.39 -2.39 -0.02 2.95 16 34 H 0.08 2.71 7.79 -2.39 -0.02 2.69 16 35 H 0.09 2.88 7.78 -2.39 -0.02 2.86 16 36 H 0.15 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.15 -0.01 8.14 -2.38 -0.02 -0.03 16 39 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 Total: -1.00 -90.65 331.90 4.48 -86.17 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.00 Total: 6.46 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 5.41 Total: 22.81 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.66 Total: -102.60 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -0.15 Total: -60.24 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 1.88 Total: 47.39 kcal Total: -90.65 4.48 -86.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208038.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.972 kcal (2) G-P(sol) polarization free energy of solvation -90.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds