Wall clock time and date at job start Tue Mar 31 2020 02:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46894 * 110.99840 * 294.30263 * 10 9 7 12 12 C 1.53241 * 109.33738 * 172.74512 * 11 10 9 13 13 N 1.47084 * 108.52025 * 53.83261 * 12 11 10 14 14 C 1.34775 * 120.88142 * 128.83757 * 13 12 11 15 15 O 1.21285 * 119.99832 * 179.97438 * 14 13 12 16 16 C 1.50700 * 119.99961 * 359.97425 * 14 13 12 17 17 H 1.09000 * 115.55527 * 34.33149 * 16 14 13 18 18 C 1.53001 * 117.49672 * 248.62105 * 16 14 13 19 19 C 1.53002 * 60.00243 * 252.51075 * 18 16 14 20 20 H 1.08994 * 117.49357 * 107.48859 * 19 18 16 21 21 C 1.50693 * 117.51902 * 252.51832 * 19 18 16 22 22 O 1.20824 * 119.99997 * 68.63188 * 21 19 18 23 23 O 1.34228 * 119.99946 * 248.62474 * 21 19 18 24 24 C 1.47075 * 118.23631 * 308.81089 * 13 12 11 25 25 C 1.46907 * 110.99886 * 169.99909 * 10 9 7 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.49592 * 292.70537 * 11 10 9 30 30 H 1.08997 * 109.49306 * 52.78695 * 11 10 9 31 31 H 1.08994 * 109.62922 * 294.12012 * 12 11 10 32 32 H 1.08998 * 109.78677 * 173.63361 * 12 11 10 33 33 H 1.09001 * 117.50180 * 0.02562 * 18 16 14 34 34 H 1.08999 * 117.50028 * 145.02349 * 18 16 14 35 35 H 0.96703 * 116.99450 * 180.02562 * 23 21 19 36 36 H 1.09005 * 109.63142 * 291.48128 * 24 13 12 37 37 H 1.08999 * 109.78948 * 170.99282 * 24 13 12 38 38 H 1.09001 * 109.49027 * 307.21223 * 25 10 9 39 39 H 1.08998 * 109.48893 * 67.29331 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9767 -3.6491 -1.2504 12 6 4.0789 -4.7078 -1.1385 13 7 3.4615 -5.9863 -0.7544 14 6 3.7122 -7.1125 -1.4510 15 8 3.1947 -8.1582 -1.1199 16 6 4.6355 -7.0724 -2.6414 17 1 5.4678 -6.3725 -2.5675 18 6 4.0162 -7.2908 -4.0233 19 6 4.8797 -8.3840 -3.3905 20 1 4.3726 -9.2757 -3.0224 21 6 6.2526 -8.6093 -3.9696 22 8 7.1109 -7.7699 -3.8335 23 8 6.5219 -9.7426 -4.6366 24 6 2.5637 -6.0032 0.4104 25 6 1.5211 -4.8936 0.2376 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.3149 -3.8993 -2.0796 30 1 3.4272 -2.6722 -1.4260 31 1 4.8002 -4.4066 -0.3789 32 1 4.5830 -4.8185 -2.0986 33 1 2.9410 -7.4632 -4.0716 34 1 4.4411 -6.7346 -4.8589 35 1 7.4167 -9.8421 -4.9895 36 1 3.1393 -5.8265 1.3190 37 1 2.0629 -6.9691 0.4763 38 1 0.9160 -4.8191 1.1412 39 1 0.8795 -5.1263 -0.6122 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134822005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:44 Heat of formation + Delta-G solvation = -87.528039 kcal Electronic energy + Delta-G solvation = -22125.201905 eV Core-core repulsion = 18647.906101 eV Total energy + Delta-G solvation = -3477.295805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.97929 -39.96559 -37.90350 -36.74538 -35.91036 -34.45932 -32.45884 -30.91993 -28.44660 -26.51581 -25.48784 -24.13187 -23.16789 -21.95007 -21.18924 -20.24450 -18.89351 -18.31070 -17.75731 -16.44520 -16.38070 -16.11879 -15.79095 -15.18899 -14.79331 -14.49600 -14.37826 -14.10381 -13.81395 -13.63416 -12.99944 -12.70365 -12.58573 -12.30501 -11.97370 -11.92010 -11.32791 -11.19610 -11.15922 -11.03290 -10.94580 -10.84708 -10.78312 -10.63425 -10.57442 -9.93981 -9.76234 -9.32681 -8.56826 -8.47550 -7.37233 -6.08929 -4.11246 1.69661 2.32143 2.52264 3.08679 3.29396 3.34213 3.36502 3.48920 4.18725 4.32478 4.36374 4.45049 4.73955 4.83534 4.95307 5.23300 5.25203 5.28030 5.35964 5.44062 5.57311 5.58961 5.64959 5.73020 5.81949 5.98391 6.12224 6.23615 6.40596 6.42815 6.61295 7.18054 7.23900 7.44515 7.54986 7.70725 7.97748 8.08192 8.13208 8.43764 8.95669 9.53452 11.01816 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.003464 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.979972 B = 8080.414928 C = 8751.726821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.051 3.949 12 C 0.106 3.894 13 N -0.599 5.599 14 C 0.544 3.456 15 O -0.549 6.549 16 C -0.154 4.154 17 H 0.141 0.859 18 C -0.113 4.113 19 C -0.141 4.141 20 H 0.150 0.850 21 C 0.513 3.487 22 O -0.513 6.513 23 O -0.510 6.510 24 C 0.118 3.882 25 C 0.041 3.959 26 H 0.263 0.737 27 H 0.032 0.968 28 H -0.009 1.009 29 H 0.026 0.974 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.566 -15.572 -7.984 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.261 5.261 11 C -0.079 4.079 12 C -0.016 4.016 13 N -0.331 5.331 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.175 4.175 17 H 0.159 0.841 18 C -0.151 4.151 19 C -0.160 4.160 20 H 0.167 0.833 21 C 0.355 3.645 22 O -0.401 6.401 23 O -0.321 6.321 24 C -0.004 4.004 25 C -0.088 4.088 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.009 0.991 29 H 0.044 0.956 30 H 0.117 0.883 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.271 0.729 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 9.284 -15.624 -7.206 19.551 hybrid contribution 0.474 0.871 -0.827 1.291 sum 9.758 -14.753 -8.033 19.427 Atomic orbital electron populations 1.69948 1.06106 1.27012 1.50624 1.24996 0.94864 0.99367 0.95308 0.86549 0.79433 0.82677 0.78681 1.21364 1.20116 1.20235 1.21099 0.93439 0.89869 1.50586 0.91826 1.19721 0.89966 0.87117 0.96242 1.62087 1.28110 1.02723 1.33213 1.22325 0.95077 0.99032 0.91417 1.22102 0.96347 0.82384 1.00790 1.48103 1.46546 1.08423 1.30001 1.19362 0.81182 0.83446 0.82872 1.90677 1.52513 1.30218 1.69364 1.22365 1.02710 0.99314 0.93155 0.84087 1.23105 1.00226 0.97442 0.94325 1.21615 0.92799 0.96679 1.04922 0.83279 1.22220 0.89326 0.78496 0.74436 1.90741 1.48279 1.44878 1.56179 1.84506 1.39792 1.41062 1.66790 1.21795 0.91700 0.99619 0.87324 1.22408 0.94894 0.90512 1.01018 0.92782 0.95018 0.99084 0.95601 0.88337 0.90402 0.89888 0.86351 0.86747 0.72851 0.90735 0.89309 0.89948 0.95492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.51 -13.72 8.41 -34.44 -0.29 -14.01 16 8 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 9 C 0.19 4.84 4.72 -4.98 -0.02 4.82 16 10 N -0.54 -10.83 4.62 -235.76 -1.09 -11.92 16 11 C 0.05 0.89 5.46 -3.70 -0.02 0.87 16 12 C 0.11 1.47 6.45 -3.60 -0.02 1.45 16 13 N -0.60 -8.74 3.01 -172.46 -0.52 -9.26 16 14 C 0.54 7.76 7.49 -10.99 -0.08 7.67 16 15 O -0.55 -9.23 15.72 5.55 0.09 -9.14 16 16 C -0.15 -1.73 4.47 -91.77 -0.41 -2.14 16 17 H 0.14 1.52 6.41 -51.93 -0.33 1.19 16 18 C -0.11 -1.01 9.94 -26.73 -0.27 -1.28 16 19 C -0.14 -1.41 5.81 -91.77 -0.53 -1.94 16 20 H 0.15 1.53 7.67 -51.93 -0.40 1.13 16 21 C 0.51 5.13 8.11 36.00 0.29 5.42 16 22 O -0.51 -6.49 17.02 -18.75 -0.32 -6.81 16 23 O -0.51 -3.75 13.42 -39.25 -0.53 -4.28 16 24 C 0.12 1.78 6.59 -3.60 -0.02 1.76 16 25 C 0.04 0.71 5.62 -3.70 -0.02 0.69 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.03 0.85 7.97 -51.92 -0.41 0.44 16 28 H -0.01 -0.23 8.13 -51.93 -0.42 -0.66 16 29 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 1.84 6.67 -51.93 -0.35 1.50 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.93 5.78 -51.93 -0.30 0.63 16 33 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.41 1.19 9.10 45.56 0.41 1.60 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 1.32 7.07 -51.93 -0.37 0.95 16 38 H 0.08 1.39 7.99 -51.93 -0.41 0.97 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 327.53 15.07 4.94 4.94 Total: -1.00 -33.03 327.53 -7.84 -40.86 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.63 Total: 0.20 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.50 Total: 4.77 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.87 Total: -46.48 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.76 Total: -20.24 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.03 -7.84 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134822005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.664 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds