Wall clock time and date at job start Tue Mar 31 2020 03:38:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45203 * 1
3 3 C 1.34232 * 117.00151 * 2 1
4 4 O 1.20830 * 119.99516 * 359.97438 * 3 2 1
5 5 C 1.50697 * 120.00235 * 179.97438 * 3 2 1
6 6 H 1.09002 * 109.50854 * 304.91689 * 5 3 2
7 7 C 1.53101 * 109.50104 * 65.00213 * 5 3 2
8 8 N 1.47019 * 109.25443 * 176.82740 * 7 5 3
9 9 C 1.46900 * 110.99856 * 177.60909 * 8 7 5
10 10 C 1.52999 * 109.47058 * 170.00237 * 9 8 7
11 11 H 1.09004 * 109.46798 * 304.99404 * 10 9 8
12 12 C 1.47199 * 109.47499 * 64.99713 * 10 9 8
13 13 N 7.54225 * 173.81802 * 238.57382 * 2 1 3
14 14 C 1.52998 * 109.47057 * 184.99895 * 10 9 8
15 15 C 1.50706 * 109.47348 * 174.99602 * 14 10 9
16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 10
17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 10
18 18 N 1.31514 * 120.00481 * 180.02562 * 17 15 14
19 19 Si 1.86801 * 119.99745 * 359.97438 * 17 15 14
20 20 H 1.48504 * 109.47209 * 90.00365 * 19 17 15
21 21 H 1.48506 * 109.47294 * 210.00213 * 19 17 15
22 22 H 1.48501 * 109.47275 * 330.00116 * 19 17 15
23 23 C 1.47012 * 110.75370 * 301.38096 * 8 7 5
24 24 C 1.53100 * 109.25503 * 58.61601 * 23 8 7
25 25 O 1.43009 * 109.26202 * 303.15115 * 24 23 8
26 26 H 1.08997 * 109.46985 * 180.02562 * 1 2 3
27 27 H 1.09001 * 109.47006 * 300.00032 * 1 2 3
28 28 H 1.08997 * 109.47136 * 60.00205 * 1 2 3
29 29 H 1.08993 * 109.51083 * 56.89318 * 7 5 3
30 30 H 1.09000 * 109.50916 * 296.75795 * 7 5 3
31 31 H 1.08993 * 109.47513 * 49.99769 * 9 8 7
32 32 H 1.09004 * 109.46897 * 289.99666 * 9 8 7
33 33 H 1.09001 * 109.47671 * 54.99810 * 14 10 9
34 34 H 1.08998 * 109.47454 * 294.99808 * 14 10 9
35 35 H 0.96995 * 120.00207 * 179.97438 * 18 17 15
36 36 H 1.08999 * 109.51079 * 178.54983 * 23 8 7
37 37 H 1.09006 * 109.50745 * 298.68661 * 23 8 7
38 38 H 1.09007 * 109.50876 * 183.21865 * 24 23 8
39 39 H 1.08997 * 109.50602 * 63.09008 * 24 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0615 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2749 0.0006
6 1 3.9603 0.7068 0.8433
7 6 4.1092 0.6923 -1.3071
8 7 5.5716 0.8411 -1.3339
9 6 6.1394 0.2426 -2.5493
10 6 7.6149 0.6298 -2.6671
11 1 7.7096 1.7151 -2.6321
12 6 8.3689 0.0352 -1.5514
13 7 8.9504 -0.4235 -0.6931
14 6 8.1738 0.1117 -3.9938
15 6 9.5901 0.5972 -4.1661
16 1 10.0457 1.2140 -3.4056
17 6 10.3058 0.2498 -5.2921
18 7 11.5419 0.6730 -5.4423
19 14 9.5202 -0.8234 -6.6039
20 1 8.8396 0.0368 -7.6050
21 1 10.5694 -1.6308 -7.2767
22 1 8.5271 -1.7294 -5.9729
23 6 5.9536 2.2558 -1.2154
24 6 5.3921 2.8226 0.0913
25 8 3.9738 2.6411 0.1133
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 3.6736 1.2259 -2.1518
30 1 3.8497 -0.3644 -1.3702
31 1 5.5972 0.6076 -3.4216
32 1 6.0518 -0.8426 -2.4950
33 1 7.5605 0.4813 -4.8156
34 1 8.1610 -0.9782 -3.9926
35 1 12.0455 0.4283 -6.2343
36 1 7.0403 2.3403 -1.2116
37 1 5.5473 2.8144 -2.0587
38 1 5.6241 3.8857 0.1563
39 1 5.8392 2.2996 0.9367
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000246643605.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:44
Heat of formation + Delta-G solvation = -90.496762 kcal
Electronic energy + Delta-G solvation = -22201.072985 eV
Core-core repulsion = 18723.648446 eV
Total energy + Delta-G solvation = -3477.424538 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 0.53 seconds
Orbital eigenvalues (eV)
-41.00715 -39.63684 -37.44098 -36.62976 -35.31794 -33.63675 -32.22477 -31.68006
-28.95150 -28.01023 -26.41327 -24.61786 -23.40055 -21.55416 -21.35546 -20.64243
-18.10269 -17.48150 -16.97388 -16.90402 -16.74873 -16.18281 -15.92740 -15.12994
-14.99085 -14.74159 -14.42704 -13.89321 -13.52356 -13.39981 -13.36796 -13.04111
-12.51774 -12.41621 -12.36209 -12.08676 -11.95466 -11.66818 -11.46281 -11.30258
-11.14347 -11.04086 -10.77457 -10.56980 -10.41997 -10.06840 -9.98369 -9.76236
-9.37380 -8.67028 -8.52132 -6.15762 -4.17148 1.83798 2.02883 3.22038
3.31418 3.31561 3.46444 3.59813 3.67622 3.82180 4.33616 4.38178
4.47294 4.67465 4.70631 4.76919 4.80285 4.85254 4.95655 5.11703
5.18462 5.18959 5.31711 5.34676 5.41061 5.52309 5.64595 5.71376
5.81648 5.97855 6.09765 6.17777 6.66504 6.77670 6.81062 6.85279
7.04119 7.43631 7.57123 8.33798 8.42506 8.86813 9.43782 10.97219
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.025801 B = 0.003671 C = 0.003453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1084.948153 B = 7624.497106 C = 8106.783341
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.354 6.354
3 C 0.470 3.530
4 O -0.485 6.485
5 C 0.106 3.894
6 H 0.107 0.893
7 C 0.032 3.968
8 N -0.536 5.536
9 C 0.060 3.940
10 C 0.012 3.988
11 H 0.109 0.891
12 C 0.248 3.752
13 N -0.463 5.463
14 C -0.005 4.005
15 C -0.530 4.530
16 H 0.074 0.926
17 C 0.072 3.928
18 N -0.896 5.896
19 Si 0.877 3.123
20 H -0.275 1.275
21 H -0.287 1.287
22 H -0.264 1.264
23 C 0.002 3.998
24 C 0.067 3.933
25 O -0.363 6.363
26 H 0.104 0.896
27 H 0.064 0.936
28 H 0.064 0.936
29 H 0.052 0.948
30 H 0.101 0.899
31 H 0.058 0.942
32 H 0.087 0.913
33 H 0.033 0.967
34 H 0.027 0.973
35 H 0.265 0.735
36 H 0.102 0.898
37 H 0.054 0.946
38 H 0.109 0.891
39 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.865 0.163 8.176 22.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.271 6.271
3 C 0.310 3.690
4 O -0.370 6.370
5 C 0.046 3.954
6 H 0.125 0.875
7 C -0.097 4.097
8 N -0.261 5.261
9 C -0.068 4.068
10 C -0.010 4.010
11 H 0.127 0.873
12 C -0.069 4.069
13 N -0.140 5.140
14 C -0.044 4.044
15 C -0.568 4.568
16 H 0.092 0.908
17 C -0.130 4.130
18 N -0.534 5.534
19 Si 0.704 3.296
20 H -0.200 1.200
21 H -0.213 1.213
22 H -0.188 1.188
23 C -0.125 4.125
24 C -0.010 4.010
25 O -0.282 6.282
26 H 0.123 0.877
27 H 0.082 0.918
28 H 0.083 0.917
29 H 0.070 0.930
30 H 0.119 0.881
31 H 0.076 0.924
32 H 0.105 0.895
33 H 0.051 0.949
34 H 0.045 0.955
35 H 0.075 0.925
36 H 0.120 0.880
37 H 0.072 0.928
38 H 0.127 0.873
39 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -20.000 -0.324 9.776 22.263
hybrid contribution -0.715 -0.059 -1.886 2.017
sum -20.714 -0.384 7.890 22.169
Atomic orbital electron populations
1.23315 0.75704 1.03954 1.02734 1.86487 1.23768 1.32631 1.84234
1.23149 0.91018 0.81729 0.73098 1.90695 1.66617 1.36289 1.43428
1.21364 0.87248 0.86202 1.00548 0.87532 1.22615 0.89015 1.02620
0.95416 1.62306 1.08252 1.15843 1.39704 1.22335 0.93707 1.00782
0.89970 1.19139 0.89954 1.00879 0.90998 0.87323 1.28564 0.92488
0.93090 0.92802 1.80926 1.10235 1.09780 1.13013 1.19646 0.97708
0.97269 0.89760 1.20995 0.95772 1.33359 1.06629 0.90782 1.24984
0.94635 0.95428 0.98001 1.69898 1.09645 1.45228 1.28579 0.86822
0.79470 0.81194 0.82105 1.20032 1.21251 1.18826 1.23038 1.02919
0.88367 0.98210 1.22837 0.79098 1.01995 0.97052 1.88036 1.23417
1.22215 1.94487 0.87732 0.91764 0.91699 0.93020 0.88110 0.92385
0.89451 0.94884 0.95493 0.92491 0.87998 0.92812 0.87314 0.91663
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.24 10.56 101.05 1.07 1.31 16
2 O -0.35 -3.39 10.56 -39.26 -0.41 -3.80 16
3 C 0.47 5.45 7.29 36.00 0.26 5.71 16
4 O -0.49 -7.08 16.26 -25.45 -0.41 -7.49 16
5 C 0.11 1.16 3.33 -27.83 -0.09 1.07 16
6 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16
7 C 0.03 0.33 4.89 -3.71 -0.02 0.32 16
8 N -0.54 -6.43 4.58 -234.30 -1.07 -7.50 16
9 C 0.06 0.78 4.64 -3.82 -0.02 0.76 16
10 C 0.01 0.20 1.73 -93.41 -0.16 0.04 16
11 H 0.11 1.69 5.95 -51.93 -0.31 1.38 16
12 C 0.25 4.81 13.30 -20.83 -0.28 4.53 16
13 N -0.46 -9.96 18.52 42.07 0.78 -9.18 16
14 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16
15 C -0.53 -13.84 9.15 -34.44 -0.32 -14.16 16
16 H 0.07 2.12 7.84 -52.49 -0.41 1.71 16
17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
18 N -0.90 -26.56 13.96 55.43 0.77 -25.79 16
19 Si 0.88 20.18 27.47 -169.99 -4.67 15.51 16
20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
22 H -0.26 -5.72 6.53 56.52 0.37 -5.35 16
23 C 0.00 0.03 4.92 -3.71 -0.02 0.01 16
24 C 0.07 0.70 7.01 37.21 0.26 0.96 16
25 O -0.36 -4.54 10.01 -55.09 -0.55 -5.09 16
26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16
27 H 0.06 0.42 8.13 -51.93 -0.42 0.00 16
28 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16
29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16
30 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16
31 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16
32 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16
33 H 0.03 0.63 7.58 -51.93 -0.39 0.23 16
34 H 0.03 0.56 7.18 -51.93 -0.37 0.19 16
35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16
36 H 0.10 1.22 5.68 -51.93 -0.29 0.92 16
37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
38 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16
39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
LS Contribution 329.90 15.07 4.97 4.97
Total: -1.00 -33.27 329.90 -5.70 -38.97
By element:
Atomic # 1 Polarization: 2.78 SS G_CDS: -5.60 Total: -2.82 kcal
Atomic # 6 Polarization: 1.73 SS G_CDS: 0.49 Total: 2.22 kcal
Atomic # 7 Polarization: -42.94 SS G_CDS: 0.48 Total: -42.46 kcal
Atomic # 8 Polarization: -15.01 SS G_CDS: -1.38 Total: -16.39 kcal
Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal
Total LS contribution 4.97 Total: 4.97 kcal
Total: -33.27 -5.70 -38.97 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000246643605.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.531 kcal
(2) G-P(sol) polarization free energy of solvation -33.266 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.497 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.53 seconds