Wall clock time and date at job start Tue Mar 31 2020 03:38:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45203 * 1
3 3 C 1.34232 * 117.00151 * 2 1
4 4 O 1.20830 * 119.99516 * 359.97438 * 3 2 1
5 5 C 1.50697 * 120.00235 * 179.97438 * 3 2 1
6 6 H 1.09002 * 109.50854 * 304.91689 * 5 3 2
7 7 C 1.53101 * 109.50104 * 65.00213 * 5 3 2
8 8 N 1.47019 * 109.25443 * 176.82740 * 7 5 3
9 9 C 1.46900 * 110.99856 * 177.60909 * 8 7 5
10 10 C 1.52999 * 109.47058 * 170.00237 * 9 8 7
11 11 H 1.09004 * 109.46798 * 304.99404 * 10 9 8
12 12 C 1.47199 * 109.47499 * 64.99713 * 10 9 8
13 13 N 7.54225 * 173.81802 * 238.57382 * 2 1 3
14 14 C 1.52998 * 109.47057 * 184.99895 * 10 9 8
15 15 C 1.50706 * 109.47348 * 174.99602 * 14 10 9
16 16 H 1.08000 * 119.99302 * 359.97438 * 15 14 10
17 17 C 1.37871 * 120.00436 * 179.72505 * 15 14 10
18 18 N 1.31514 * 120.00481 * 180.02562 * 17 15 14
19 19 Si 1.86801 * 119.99745 * 359.97438 * 17 15 14
20 20 H 1.48504 * 109.47209 * 90.00365 * 19 17 15
21 21 H 1.48506 * 109.47294 * 210.00213 * 19 17 15
22 22 H 1.48501 * 109.47275 * 330.00116 * 19 17 15
23 23 C 1.47012 * 110.75370 * 301.38096 * 8 7 5
24 24 C 1.53100 * 109.25503 * 58.61601 * 23 8 7
25 25 O 1.43009 * 109.26202 * 303.15115 * 24 23 8
26 26 H 1.08997 * 109.46985 * 180.02562 * 1 2 3
27 27 H 1.09001 * 109.47006 * 300.00032 * 1 2 3
28 28 H 1.08997 * 109.47136 * 60.00205 * 1 2 3
29 29 H 1.08993 * 109.51083 * 56.89318 * 7 5 3
30 30 H 1.09000 * 109.50916 * 296.75795 * 7 5 3
31 31 H 1.08993 * 109.47513 * 49.99769 * 9 8 7
32 32 H 1.09004 * 109.46897 * 289.99666 * 9 8 7
33 33 H 1.09001 * 109.47671 * 54.99810 * 14 10 9
34 34 H 1.08998 * 109.47454 * 294.99808 * 14 10 9
35 35 H 0.96995 * 120.00207 * 179.97438 * 18 17 15
36 36 H 1.08999 * 109.51079 * 178.54983 * 23 8 7
37 37 H 1.09006 * 109.50745 * 298.68661 * 23 8 7
38 38 H 1.09007 * 109.50876 * 183.21865 * 24 23 8
39 39 H 1.08997 * 109.50602 * 63.09008 * 24 23 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0615 1.1960 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5664 1.2749 0.0006
6 1 3.9603 0.7068 0.8433
7 6 4.1092 0.6923 -1.3071
8 7 5.5716 0.8411 -1.3339
9 6 6.1394 0.2426 -2.5493
10 6 7.6149 0.6298 -2.6671
11 1 7.7096 1.7151 -2.6321
12 6 8.3689 0.0352 -1.5514
13 7 8.9504 -0.4235 -0.6931
14 6 8.1738 0.1117 -3.9938
15 6 9.5901 0.5972 -4.1661
16 1 10.0457 1.2140 -3.4056
17 6 10.3058 0.2498 -5.2921
18 7 11.5419 0.6730 -5.4423
19 14 9.5202 -0.8234 -6.6039
20 1 8.8396 0.0368 -7.6050
21 1 10.5694 -1.6308 -7.2767
22 1 8.5271 -1.7294 -5.9729
23 6 5.9536 2.2558 -1.2154
24 6 5.3921 2.8226 0.0913
25 8 3.9738 2.6411 0.1133
26 1 -0.3633 -1.0276 0.0005
27 1 -0.3633 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 3.6736 1.2259 -2.1518
30 1 3.8497 -0.3644 -1.3702
31 1 5.5972 0.6076 -3.4216
32 1 6.0518 -0.8426 -2.4950
33 1 7.5605 0.4813 -4.8156
34 1 8.1610 -0.9782 -3.9926
35 1 12.0455 0.4283 -6.2343
36 1 7.0403 2.3403 -1.2116
37 1 5.5473 2.8144 -2.0587
38 1 5.6241 3.8857 0.1563
39 1 5.8392 2.2996 0.9367
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000246643605.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:43
Heat of formation + Delta-G solvation = -113.818180 kcal
Electronic energy + Delta-G solvation = -22202.084277 eV
Core-core repulsion = 18723.648446 eV
Total energy + Delta-G solvation = -3478.435831 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 2.37 seconds
Orbital eigenvalues (eV)
-41.85896 -40.53678 -38.64227 -37.54381 -36.58330 -35.35238 -33.67793 -32.79753
-30.04627 -28.97185 -27.54622 -25.55439 -24.50367 -23.24888 -22.27754 -21.50343
-19.06811 -18.82785 -18.27191 -18.20075 -17.62907 -17.12706 -16.84944 -16.29612
-16.04974 -15.84451 -15.47033 -15.13263 -14.79402 -14.70047 -14.31412 -14.22340
-13.98408 -13.86016 -13.37238 -13.12861 -13.08623 -12.95689 -12.81936 -12.51598
-12.29611 -12.02625 -11.89017 -11.84356 -11.70975 -11.61494 -11.38946 -11.19889
-10.79742 -10.71822 -9.41095 -8.23781 -6.29516 0.97006 1.28432 1.43685
1.46890 1.56616 2.04907 2.11951 2.41969 2.59900 3.01609 3.12851
3.28038 3.57376 3.69570 3.88345 3.91691 4.00079 4.23092 4.30521
4.30781 4.34258 4.41996 4.52059 4.64864 4.66478 4.71421 4.72972
4.89266 4.92100 4.95700 5.21959 5.22732 5.43723 5.63238 5.81824
5.86393 5.95038 6.26445 6.61226 6.78064 6.89223 7.35259 8.93033
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.025801 B = 0.003671 C = 0.003453
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1084.948153 B = 7624.497106 C = 8106.783341
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.352 6.352
3 C 0.475 3.525
4 O -0.522 6.522
5 C 0.103 3.897
6 H 0.118 0.882
7 C 0.038 3.962
8 N -0.545 5.545
9 C 0.069 3.931
10 C 0.017 3.983
11 H 0.119 0.881
12 C 0.260 3.740
13 N -0.507 5.507
14 C -0.004 4.004
15 C -0.530 4.530
16 H 0.030 0.970
17 C 0.003 3.997
18 N -0.954 5.954
19 Si 0.947 3.053
20 H -0.259 1.259
21 H -0.297 1.297
22 H -0.235 1.235
23 C 0.002 3.998
24 C 0.068 3.932
25 O -0.382 6.382
26 H 0.137 0.863
27 H 0.063 0.937
28 H 0.064 0.936
29 H 0.053 0.947
30 H 0.118 0.882
31 H 0.082 0.918
32 H 0.096 0.904
33 H 0.062 0.938
34 H 0.030 0.970
35 H 0.264 0.736
36 H 0.092 0.908
37 H 0.059 0.941
38 H 0.124 0.876
39 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.614 -1.048 7.389 24.765
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.268 6.268
3 C 0.318 3.682
4 O -0.410 6.410
5 C 0.044 3.956
6 H 0.135 0.865
7 C -0.090 4.090
8 N -0.270 5.270
9 C -0.059 4.059
10 C -0.004 4.004
11 H 0.136 0.864
12 C -0.056 4.056
13 N -0.184 5.184
14 C -0.043 4.043
15 C -0.568 4.568
16 H 0.048 0.952
17 C -0.194 4.194
18 N -0.595 5.595
19 Si 0.770 3.230
20 H -0.183 1.183
21 H -0.224 1.224
22 H -0.158 1.158
23 C -0.126 4.126
24 C -0.008 4.008
25 O -0.301 6.301
26 H 0.155 0.845
27 H 0.081 0.919
28 H 0.083 0.917
29 H 0.072 0.928
30 H 0.136 0.864
31 H 0.100 0.900
32 H 0.114 0.886
33 H 0.080 0.920
34 H 0.049 0.951
35 H 0.073 0.927
36 H 0.110 0.890
37 H 0.077 0.923
38 H 0.142 0.858
39 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -22.783 -1.551 9.010 24.548
hybrid contribution 0.151 0.358 -1.547 1.595
sum -22.632 -1.193 7.462 23.860
Atomic orbital electron populations
1.23632 0.74030 1.06080 1.02717 1.86485 1.25394 1.31397 1.83564
1.23281 0.91211 0.81726 0.72024 1.90680 1.67391 1.37533 1.45378
1.21484 0.86985 0.85777 1.01361 0.86471 1.22616 0.87734 1.03650
0.95040 1.62271 1.09341 1.16095 1.39335 1.22236 0.90786 1.01488
0.91401 1.19216 0.92058 1.01130 0.88023 0.86394 1.29187 0.91648
0.92101 0.92696 1.80927 1.11599 1.11333 1.14523 1.19597 0.94634
0.97378 0.92659 1.21387 0.98527 1.31869 1.05038 0.95152 1.26028
0.95056 0.97246 1.01031 1.70084 1.11891 1.47804 1.29718 0.85711
0.78773 0.79544 0.78986 1.18328 1.22355 1.15773 1.23031 1.02331
0.88349 0.98884 1.22911 0.78311 1.02986 0.96605 1.88021 1.24273
1.23256 1.94590 0.84533 0.91862 0.91741 0.92834 0.86372 0.89984
0.88551 0.92008 0.95140 0.92690 0.88977 0.92284 0.85801 0.91682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.31 10.56 113.37 1.20 1.51 16
2 O -0.35 -5.95 10.56 -51.43 -0.54 -6.49 16
3 C 0.48 10.28 7.29 71.23 0.52 10.80 16
4 O -0.52 -14.80 16.26 28.36 0.46 -14.34 16
5 C 0.10 2.06 3.33 29.88 0.10 2.16 16
6 H 0.12 2.06 8.14 -2.39 -0.02 2.05 16
7 C 0.04 0.67 4.89 86.31 0.42 1.10 16
8 N -0.55 -11.58 4.58 -895.20 -4.10 -15.68 16
9 C 0.07 1.53 4.64 86.30 0.40 1.93 16
10 C 0.02 0.54 1.73 -12.60 -0.02 0.52 16
11 H 0.12 3.48 5.95 -2.38 -0.01 3.47 16
12 C 0.26 9.89 13.30 89.47 1.19 11.08 16
13 N -0.51 -21.78 18.52 19.98 0.37 -21.41 16
14 C 0.00 -0.14 3.49 29.85 0.10 -0.04 16
15 C -0.53 -27.72 9.15 25.60 0.23 -27.48 16
16 H 0.03 1.80 7.84 -2.91 -0.02 1.77 16
17 C 0.00 0.17 5.47 84.65 0.46 0.63 16
18 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16
19 Si 0.95 40.42 27.47 68.60 1.88 42.31 16
20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16
21 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16
22 H -0.23 -8.86 6.53 99.48 0.65 -8.21 16
23 C 0.00 0.04 4.92 86.32 0.42 0.46 16
24 C 0.07 1.33 7.01 72.02 0.50 1.83 16
25 O -0.38 -9.03 10.01 -130.00 -1.30 -10.33 16
26 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16
27 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16
28 H 0.06 0.74 8.13 -2.39 -0.02 0.72 16
29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16
30 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16
31 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16
32 H 0.10 2.01 8.14 -2.38 -0.02 2.00 16
33 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16
34 H 0.03 1.17 7.18 -2.39 -0.02 1.15 16
35 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16
36 H 0.09 2.09 5.68 -2.39 -0.01 2.08 16
37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16
38 H 0.12 1.98 8.14 -2.38 -0.02 1.96 16
39 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
Total: -1.00 -73.76 329.90 3.60 -70.16
By element:
Atomic # 1 Polarization: 8.19 SS G_CDS: 0.99 Total: 9.18 kcal
Atomic # 6 Polarization: -1.04 SS G_CDS: 5.54 Total: 4.50 kcal
Atomic # 7 Polarization: -91.55 SS G_CDS: -3.43 Total: -94.98 kcal
Atomic # 8 Polarization: -29.78 SS G_CDS: -1.38 Total: -31.16 kcal
Atomic # 14 Polarization: 40.42 SS G_CDS: 1.88 Total: 42.31 kcal
Total: -73.76 3.60 -70.16 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000246643605.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.659 kcal
(2) G-P(sol) polarization free energy of solvation -73.761 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.419 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.159 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.818 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.38 seconds