Wall clock time and date at job start Tue Mar 31 2020 03:34:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42898 * 113.99613 * 2 1
4 4 C 1.53005 * 109.46800 * 179.97438 * 3 2 1
5 5 C 1.53001 * 109.46857 * 180.02562 * 4 3 2
6 6 H 1.08993 * 110.53863 * 58.47717 * 5 4 3
7 7 N 1.47308 * 110.59751 * 295.64105 * 5 4 3
8 8 C 1.34534 * 106.62093 * 241.70113 * 7 5 4
9 9 O 1.21535 * 123.76886 * 179.77447 * 8 7 5
10 10 N 1.33784 * 112.45333 * 359.61154 * 8 7 5
11 11 C 1.46507 * 124.17591 * 180.20737 * 10 8 7
12 12 C 1.52999 * 109.47352 * 267.34891 * 11 10 8
13 13 C 1.50699 * 115.54967 * 186.01213 * 12 11 10
14 14 H 1.08003 * 120.00075 * 152.46033 * 13 12 11
15 15 C 1.37877 * 119.99946 * 332.46298 * 13 12 11
16 16 N 1.31516 * 120.00288 * 344.14237 * 15 13 12
17 17 Si 1.86803 * 119.99879 * 164.14254 * 15 13 12
18 18 H 1.48504 * 109.46991 * 0.02562 * 17 15 13
19 19 H 1.48497 * 109.47205 * 119.99940 * 17 15 13
20 20 H 1.48496 * 109.47054 * 240.00075 * 17 15 13
21 21 C 1.53001 * 117.49608 * 40.34931 * 12 11 10
22 22 C 1.52995 * 117.49693 * 331.68636 * 12 11 10
23 23 C 1.34766 * 111.64960 * 0.41215 * 10 8 7
24 24 O 1.21233 * 127.15845 * 179.80397 * 23 10 8
25 25 H 1.09003 * 109.46594 * 60.00585 * 1 2 3
26 26 H 1.09008 * 109.47037 * 179.97438 * 1 2 3
27 27 H 1.08998 * 109.47356 * 300.00289 * 1 2 3
28 28 H 1.09001 * 109.47659 * 59.99615 * 3 2 1
29 29 H 1.08993 * 109.47404 * 299.99437 * 3 2 1
30 30 H 1.08997 * 109.47163 * 60.00367 * 4 3 2
31 31 H 1.09001 * 109.47271 * 299.99861 * 4 3 2
32 32 H 0.97003 * 126.69495 * 61.44519 * 7 5 4
33 33 H 1.09001 * 109.46848 * 27.35338 * 11 10 8
34 34 H 1.08996 * 109.47061 * 147.34332 * 11 10 8
35 35 H 0.96999 * 120.00107 * 185.03618 * 16 15 13
36 36 H 1.08997 * 117.50072 * 359.97438 * 21 12 11
37 37 H 1.09000 * 117.50171 * 145.02258 * 21 12 11
38 38 H 1.09000 * 117.49729 * 214.97195 * 22 12 11
39 39 H 1.09000 * 117.50191 * 359.97438 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 6 4.1577 2.5825 0.0013
6 1 3.8253 3.1486 0.8713
7 7 3.8239 3.2989 -1.2418
8 6 4.9893 3.5548 -1.8633
9 8 5.0740 4.1352 -2.9277
10 7 6.0446 3.1019 -1.1770
11 6 7.4350 3.2462 -1.6155
12 6 7.8512 2.0054 -2.4080
13 6 9.3034 1.9453 -2.8060
14 1 9.7846 0.9892 -2.9507
15 6 10.0179 3.1108 -2.9854
16 7 9.3852 4.2560 -3.1193
17 14 11.8846 3.0633 -3.0383
18 1 12.3492 1.6634 -2.8654
19 1 12.3561 3.5827 -4.3471
20 1 12.4323 3.9057 -1.9449
21 6 6.8279 1.4102 -3.3773
22 6 7.1561 0.6851 -2.0697
23 6 5.6705 2.4927 -0.0345
24 8 6.3934 1.9803 0.7928
25 1 -0.3632 0.5138 -0.8901
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5139 0.8899
28 1 1.6885 1.8465 0.8899
29 1 1.6886 1.8463 -0.8900
30 1 3.8574 0.6437 -0.8891
31 1 3.8567 0.6439 0.8909
32 1 2.9365 3.5363 -1.5536
33 1 7.5267 4.1291 -2.2481
34 1 8.0813 3.3547 -0.7445
35 1 9.8827 5.0645 -3.3183
36 1 5.8581 1.9023 -3.4500
37 1 7.2051 0.9747 -4.3026
38 1 7.7491 -0.2271 -2.1354
39 1 6.4027 0.7003 -1.2822
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000348683025.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:34:45
Heat of formation + Delta-G solvation = -55.693558 kcal
Electronic energy + Delta-G solvation = -23195.984230 eV
Core-core repulsion = 19720.068872 eV
Total energy + Delta-G solvation = -3475.915358 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 1.66 seconds
Orbital eigenvalues (eV)
-42.09060 -38.27896 -38.08216 -36.84664 -35.82082 -33.93063 -32.25115 -31.57213
-27.78315 -26.95813 -25.80212 -25.16532 -22.99551 -21.73294 -20.94165 -20.58264
-18.82483 -17.63100 -17.13692 -16.79658 -16.40883 -15.95258 -15.70404 -15.37727
-15.01379 -14.78697 -14.41558 -14.07004 -13.75083 -13.62177 -13.18244 -12.78138
-12.30801 -12.14107 -11.99813 -11.57515 -11.50490 -11.42889 -11.01369 -10.78976
-10.52889 -10.33577 -10.20296 -10.02440 -9.96249 -9.70512 -9.31667 -9.15618
-8.90050 -8.61162 -8.07011 -6.12922 -4.12970 2.00112 2.72060 3.25131
3.30225 3.34578 3.39754 3.55981 3.58254 4.21166 4.33536 4.63721
4.79104 4.84056 4.91069 4.97231 5.07892 5.09894 5.13549 5.37960
5.53241 5.66221 5.75632 5.88590 6.06813 6.24638 6.38521 6.43566
6.70370 6.81070 6.84902 6.98372 7.00733 7.14148 7.34517 7.50466
7.70541 7.85562 7.90642 8.32324 8.61602 8.81933 9.43855 10.88702
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.030598 B = 0.004520 C = 0.004395
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 914.872534 B = 6193.654055 C = 6368.840389
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.389 6.389
3 C 0.066 3.934
4 C -0.120 4.120
5 C 0.094 3.906
6 H 0.122 0.878
7 N -0.737 5.737
8 C 0.699 3.301
9 O -0.529 6.529
10 N -0.565 5.565
11 C 0.153 3.847
12 C 0.044 3.956
13 C -0.487 4.487
14 H 0.067 0.933
15 C 0.068 3.932
16 N -0.879 5.879
17 Si 0.900 3.100
18 H -0.271 1.271
19 H -0.283 1.283
20 H -0.280 1.280
21 C -0.203 4.203
22 C -0.211 4.211
23 C 0.522 3.478
24 O -0.467 6.467
25 H 0.041 0.959
26 H 0.086 0.914
27 H 0.041 0.959
28 H 0.054 0.946
29 H 0.051 0.949
30 H 0.086 0.914
31 H 0.097 0.903
32 H 0.432 0.568
33 H 0.143 0.857
34 H 0.078 0.922
35 H 0.266 0.734
36 H 0.066 0.934
37 H 0.077 0.923
38 H 0.076 0.924
39 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.243 -2.247 7.621 18.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.307 6.307
3 C -0.011 4.011
4 C -0.158 4.158
5 C -0.015 4.015
6 H 0.140 0.860
7 N -0.404 5.404
8 C 0.400 3.600
9 O -0.401 6.401
10 N -0.310 5.310
11 C 0.036 3.964
12 C 0.043 3.957
13 C -0.525 4.525
14 H 0.085 0.915
15 C -0.135 4.135
16 N -0.516 5.516
17 Si 0.727 3.273
18 H -0.196 1.196
19 H -0.210 1.210
20 H -0.206 1.206
21 C -0.241 4.241
22 C -0.248 4.248
23 C 0.307 3.693
24 O -0.338 6.338
25 H 0.060 0.940
26 H 0.105 0.895
27 H 0.060 0.940
28 H 0.072 0.928
29 H 0.069 0.931
30 H 0.105 0.895
31 H 0.115 0.885
32 H 0.275 0.725
33 H 0.161 0.839
34 H 0.096 0.904
35 H 0.077 0.923
36 H 0.084 0.916
37 H 0.095 0.905
38 H 0.094 0.906
39 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -15.465 -2.130 7.496 17.317
hybrid contribution 0.156 0.228 -0.235 0.363
sum -15.308 -1.902 7.261 17.049
Atomic orbital electron populations
1.22754 0.80870 1.02886 0.99980 1.87901 1.19787 1.27641 1.95409
1.22447 0.93241 0.85057 1.00353 1.21673 0.93727 0.94593 1.05844
1.21975 0.94366 0.95056 0.90134 0.86044 1.45638 1.08384 1.62757
1.23580 1.15953 0.80969 0.79402 0.83632 1.91026 1.84966 1.44258
1.19889 1.46911 1.10979 1.51981 1.21080 1.21948 0.72358 1.02737
0.99408 1.19302 0.92999 0.87921 0.95512 1.20509 0.91838 0.92964
1.47146 0.91474 1.25049 0.99152 0.95266 0.94063 1.69761 1.35440
0.99694 1.46713 0.86400 0.84790 0.78403 0.77704 1.19558 1.20956
1.20607 1.23014 1.00992 1.06711 0.93382 1.22951 1.04592 0.98798
0.98464 1.20559 0.89668 0.77301 0.81727 1.90785 1.60267 1.41561
1.41153 0.93989 0.89549 0.94035 0.92828 0.93092 0.89536 0.88452
0.72476 0.83945 0.90379 0.92328 0.91597 0.90479 0.90558 0.92016
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.23 11.01 101.05 1.11 1.34 16
2 O -0.39 -4.13 10.70 -35.23 -0.38 -4.51 16
3 C 0.07 0.58 5.83 37.16 0.22 0.80 16
4 C -0.12 -1.33 5.36 -26.73 -0.14 -1.47 16
5 C 0.09 1.13 3.71 -68.20 -0.25 0.88 16
6 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16
7 N -0.74 -9.46 5.93 -59.20 -0.35 -9.82 16
8 C 0.70 13.13 7.15 -88.02 -0.63 12.50 16
9 O -0.53 -11.99 16.79 5.33 0.09 -11.90 16
10 N -0.56 -11.32 1.87 -120.73 -0.23 -11.54 16
11 C 0.15 3.71 4.78 -4.04 -0.02 3.69 16
12 C 0.04 1.12 2.45 -155.66 -0.38 0.74 16
13 C -0.49 -13.38 9.07 -34.44 -0.31 -13.69 16
14 H 0.07 1.84 7.86 -52.48 -0.41 1.43 16
15 C 0.07 1.83 5.19 -17.82 -0.09 1.73 16
16 N -0.88 -24.18 10.64 55.43 0.59 -23.59 16
17 Si 0.90 20.78 29.57 -169.99 -5.03 15.75 16
18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16
19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
21 C -0.20 -4.90 9.64 -26.69 -0.26 -5.15 16
22 C -0.21 -4.85 9.55 -26.69 -0.25 -5.11 16
23 C 0.52 9.15 5.64 -10.55 -0.06 9.09 16
24 O -0.47 -9.34 17.42 5.60 0.10 -9.24 16
25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16
26 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16
27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16
28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
29 H 0.05 0.40 7.33 -51.93 -0.38 0.02 16
30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16
31 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16
32 H 0.43 4.17 8.35 -40.82 -0.34 3.82 16
33 H 0.14 3.82 5.70 -51.93 -0.30 3.52 16
34 H 0.08 1.94 8.06 -51.93 -0.42 1.52 16
35 H 0.27 6.94 8.32 -40.82 -0.34 6.60 16
36 H 0.07 1.57 5.80 -51.93 -0.30 1.27 16
37 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16
38 H 0.08 1.74 8.14 -51.93 -0.42 1.31 16
39 H 0.06 1.34 5.39 -51.93 -0.28 1.06 16
LS Contribution 323.70 15.07 4.88 4.88
Total: -1.00 -32.06 323.70 -6.77 -38.83
By element:
Atomic # 1 Polarization: 11.16 SS G_CDS: -5.37 Total: 5.79 kcal
Atomic # 6 Polarization: 6.42 SS G_CDS: -1.07 Total: 5.35 kcal
Atomic # 7 Polarization: -44.96 SS G_CDS: 0.01 Total: -44.95 kcal
Atomic # 8 Polarization: -25.46 SS G_CDS: -0.19 Total: -25.65 kcal
Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -32.06 -6.77 -38.83 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348683025.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.860 kcal
(2) G-P(sol) polarization free energy of solvation -32.064 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.925 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.694 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.66 seconds