Wall clock time and date at job start Tue Mar 31 2020 03:34:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.42898 * 113.99613 * 2 1
4 4 C 1.53005 * 109.46800 * 179.97438 * 3 2 1
5 5 C 1.53001 * 109.46857 * 180.02562 * 4 3 2
6 6 H 1.08993 * 110.53863 * 58.47717 * 5 4 3
7 7 N 1.47308 * 110.59751 * 295.64105 * 5 4 3
8 8 C 1.34534 * 106.62093 * 241.70113 * 7 5 4
9 9 O 1.21535 * 123.76886 * 179.77447 * 8 7 5
10 10 N 1.33784 * 112.45333 * 359.61154 * 8 7 5
11 11 C 1.46507 * 124.17591 * 180.20737 * 10 8 7
12 12 C 1.52999 * 109.47352 * 267.34891 * 11 10 8
13 13 C 1.50699 * 115.54967 * 186.01213 * 12 11 10
14 14 H 1.08003 * 120.00075 * 152.46033 * 13 12 11
15 15 C 1.37877 * 119.99946 * 332.46298 * 13 12 11
16 16 N 1.31516 * 120.00288 * 344.14237 * 15 13 12
17 17 Si 1.86803 * 119.99879 * 164.14254 * 15 13 12
18 18 H 1.48504 * 109.46991 * 0.02562 * 17 15 13
19 19 H 1.48497 * 109.47205 * 119.99940 * 17 15 13
20 20 H 1.48496 * 109.47054 * 240.00075 * 17 15 13
21 21 C 1.53001 * 117.49608 * 40.34931 * 12 11 10
22 22 C 1.52995 * 117.49693 * 331.68636 * 12 11 10
23 23 C 1.34766 * 111.64960 * 0.41215 * 10 8 7
24 24 O 1.21233 * 127.15845 * 179.80397 * 23 10 8
25 25 H 1.09003 * 109.46594 * 60.00585 * 1 2 3
26 26 H 1.09008 * 109.47037 * 179.97438 * 1 2 3
27 27 H 1.08998 * 109.47356 * 300.00289 * 1 2 3
28 28 H 1.09001 * 109.47659 * 59.99615 * 3 2 1
29 29 H 1.08993 * 109.47404 * 299.99437 * 3 2 1
30 30 H 1.08997 * 109.47163 * 60.00367 * 4 3 2
31 31 H 1.09001 * 109.47271 * 299.99861 * 4 3 2
32 32 H 0.97003 * 126.69495 * 61.44519 * 7 5 4
33 33 H 1.09001 * 109.46848 * 27.35338 * 11 10 8
34 34 H 1.08996 * 109.47061 * 147.34332 * 11 10 8
35 35 H 0.96999 * 120.00107 * 185.03618 * 16 15 13
36 36 H 1.08997 * 117.50072 * 359.97438 * 21 12 11
37 37 H 1.09000 * 117.50171 * 145.02258 * 21 12 11
38 38 H 1.09000 * 117.49729 * 214.97195 * 22 12 11
39 39 H 1.09000 * 117.50191 * 359.97438 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 0.0006
5 6 4.1577 2.5825 0.0013
6 1 3.8253 3.1486 0.8713
7 7 3.8239 3.2989 -1.2418
8 6 4.9893 3.5548 -1.8633
9 8 5.0740 4.1352 -2.9277
10 7 6.0446 3.1019 -1.1770
11 6 7.4350 3.2462 -1.6155
12 6 7.8512 2.0054 -2.4080
13 6 9.3034 1.9453 -2.8060
14 1 9.7846 0.9892 -2.9507
15 6 10.0179 3.1108 -2.9854
16 7 9.3852 4.2560 -3.1193
17 14 11.8846 3.0633 -3.0383
18 1 12.3492 1.6634 -2.8654
19 1 12.3561 3.5827 -4.3471
20 1 12.4323 3.9057 -1.9449
21 6 6.8279 1.4102 -3.3773
22 6 7.1561 0.6851 -2.0697
23 6 5.6705 2.4927 -0.0345
24 8 6.3934 1.9803 0.7928
25 1 -0.3632 0.5138 -0.8901
26 1 -0.3633 -1.0277 -0.0005
27 1 -0.3634 0.5139 0.8899
28 1 1.6885 1.8465 0.8899
29 1 1.6886 1.8463 -0.8900
30 1 3.8574 0.6437 -0.8891
31 1 3.8567 0.6439 0.8909
32 1 2.9365 3.5363 -1.5536
33 1 7.5267 4.1291 -2.2481
34 1 8.0813 3.3547 -0.7445
35 1 9.8827 5.0645 -3.3183
36 1 5.8581 1.9023 -3.4500
37 1 7.2051 0.9747 -4.3026
38 1 7.7491 -0.2271 -2.1354
39 1 6.4027 0.7003 -1.2822
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000348683025.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:34:43
Heat of formation + Delta-G solvation = -78.696862 kcal
Electronic energy + Delta-G solvation = -23196.981729 eV
Core-core repulsion = 19720.068872 eV
Total energy + Delta-G solvation = -3476.912856 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 1.72 seconds
Orbital eigenvalues (eV)
-43.52218 -39.61740 -39.07453 -38.52236 -37.26972 -35.40295 -34.29983 -32.62206
-29.11254 -28.20868 -27.48464 -26.36880 -24.25668 -23.13900 -22.54977 -22.07542
-20.62912 -19.05748 -18.68379 -17.94107 -17.67387 -17.14679 -16.91643 -16.67565
-16.48652 -16.07719 -15.83188 -15.52765 -15.21264 -15.13805 -14.32417 -14.14593
-13.98497 -13.61041 -13.48764 -12.90487 -12.84655 -12.72046 -12.40395 -12.29834
-12.18758 -12.07914 -11.92223 -11.79651 -11.17885 -11.14936 -10.85576 -10.59288
-10.56850 -10.36680 -10.07351 -8.16586 -6.25449 0.60852 1.30765 1.42063
1.45054 1.56978 2.05519 2.20743 2.39278 2.75602 2.88301 2.99987
3.53233 3.75817 3.90830 4.10385 4.14490 4.20970 4.29270 4.43791
4.47518 4.53924 4.57872 4.60318 4.60870 4.79781 4.86144 4.92223
4.92750 5.02677 5.09442 5.21546 5.40732 5.52972 5.80763 5.85708
6.24757 6.25508 6.26781 6.45418 6.71746 7.19497 7.34474 8.83745
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.030598 B = 0.004520 C = 0.004395
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 914.872534 B = 6193.654055 C = 6368.840389
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.419 6.419
3 C 0.067 3.933
4 C -0.115 4.115
5 C 0.114 3.886
6 H 0.174 0.826
7 N -0.705 5.705
8 C 0.695 3.305
9 O -0.576 6.576
10 N -0.577 5.577
11 C 0.171 3.829
12 C 0.015 3.985
13 C -0.516 4.516
14 H 0.059 0.941
15 C 0.027 3.973
16 N -0.901 5.901
17 Si 0.964 3.036
18 H -0.269 1.269
19 H -0.278 1.278
20 H -0.274 1.274
21 C -0.199 4.199
22 C -0.189 4.189
23 C 0.512 3.488
24 O -0.496 6.496
25 H 0.050 0.950
26 H 0.091 0.909
27 H 0.057 0.943
28 H 0.083 0.917
29 H 0.062 0.938
30 H 0.061 0.939
31 H 0.100 0.900
32 H 0.451 0.549
33 H 0.114 0.886
34 H 0.060 0.940
35 H 0.269 0.731
36 H 0.068 0.932
37 H 0.070 0.930
38 H 0.078 0.922
39 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.046 -2.446 8.940 20.287
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.339 6.339
3 C -0.009 4.009
4 C -0.153 4.153
5 C 0.006 3.994
6 H 0.191 0.809
7 N -0.372 5.372
8 C 0.396 3.604
9 O -0.452 6.452
10 N -0.322 5.322
11 C 0.051 3.949
12 C 0.013 3.987
13 C -0.554 4.554
14 H 0.077 0.923
15 C -0.174 4.174
16 N -0.538 5.538
17 Si 0.789 3.211
18 H -0.193 1.193
19 H -0.204 1.204
20 H -0.199 1.199
21 C -0.237 4.237
22 C -0.226 4.226
23 C 0.301 3.699
24 O -0.367 6.367
25 H 0.068 0.932
26 H 0.109 0.891
27 H 0.076 0.924
28 H 0.101 0.899
29 H 0.081 0.919
30 H 0.080 0.920
31 H 0.119 0.881
32 H 0.299 0.701
33 H 0.132 0.868
34 H 0.078 0.922
35 H 0.078 0.922
36 H 0.086 0.914
37 H 0.088 0.912
38 H 0.097 0.903
39 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -17.350 -2.348 8.845 19.615
hybrid contribution 0.660 0.252 -0.615 0.936
sum -16.690 -2.096 8.231 18.726
Atomic orbital electron populations
1.22930 0.79176 1.03738 1.01156 1.87850 1.21696 1.28652 1.95690
1.22481 0.91105 0.84977 1.02373 1.21618 0.95764 0.93088 1.04863
1.22105 0.89727 0.96537 0.91037 0.80943 1.45436 1.07473 1.61230
1.23049 1.16080 0.82004 0.79096 0.83182 1.90995 1.85745 1.46436
1.21983 1.46828 1.09972 1.52951 1.22409 1.21265 0.74695 1.01048
0.97883 1.19462 0.92754 0.89581 0.96856 1.20746 0.93285 0.92995
1.48351 0.92318 1.25777 1.03390 0.94786 0.93491 1.69912 1.36939
1.00141 1.46823 0.85409 0.79422 0.78389 0.77864 1.19336 1.20421
1.19931 1.22906 1.00596 1.06735 0.93419 1.22894 1.04007 0.97705
0.98007 1.21448 0.92203 0.76005 0.80273 1.90768 1.61801 1.42475
1.41704 0.93183 0.89052 0.92421 0.89875 0.91932 0.92008 0.88130
0.70090 0.86831 0.92162 0.92154 0.91405 0.91183 0.90347 0.90640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 11.01 113.37 1.25 1.54 16
2 O -0.42 -7.70 10.70 -148.98 -1.59 -9.29 16
3 C 0.07 0.92 5.83 71.98 0.42 1.34 16
4 C -0.11 -2.20 5.36 30.60 0.16 -2.03 16
5 C 0.11 2.37 3.71 44.37 0.16 2.53 16
6 H 0.17 2.07 8.14 -2.39 -0.02 2.05 16
7 N -0.70 -16.19 5.93 -459.61 -2.72 -18.91 16
8 C 0.70 25.71 7.15 179.44 1.28 27.00 16
9 O -0.58 -26.44 16.79 -3.83 -0.06 -26.50 16
10 N -0.58 -23.18 1.87 -773.12 -1.45 -24.62 16
11 C 0.17 8.58 4.78 86.38 0.41 8.99 16
12 C 0.01 0.77 2.45 -52.93 -0.13 0.64 16
13 C -0.52 -29.11 9.07 25.60 0.23 -28.88 16
14 H 0.06 3.30 7.86 -2.91 -0.02 3.28 16
15 C 0.03 1.47 5.19 84.65 0.44 1.91 16
16 N -0.90 -50.91 10.64 21.45 0.23 -50.68 16
17 Si 0.96 43.22 29.57 68.60 2.03 45.25 16
18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16
19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16
20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16
21 C -0.20 -9.75 9.64 30.62 0.30 -9.45 16
22 C -0.19 -8.75 9.55 30.62 0.29 -8.46 16
23 C 0.51 17.36 5.64 87.94 0.50 17.85 16
24 O -0.50 -19.49 17.42 -2.89 -0.05 -19.54 16
25 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
26 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16
27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16
28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16
29 H 0.06 0.71 7.33 -2.39 -0.02 0.69 16
30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16
32 H 0.45 7.08 8.35 -92.71 -0.77 6.31 16
33 H 0.11 6.37 5.70 -2.39 -0.01 6.36 16
34 H 0.06 3.13 8.06 -2.39 -0.02 3.11 16
35 H 0.27 14.30 8.32 -92.71 -0.77 13.53 16
36 H 0.07 3.28 5.80 -2.39 -0.01 3.26 16
37 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16
38 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16
39 H 0.08 3.25 5.39 -2.39 -0.01 3.24 16
Total: -1.00 -72.47 323.70 2.00 -70.47
By element:
Atomic # 1 Polarization: 20.56 SS G_CDS: 0.30 Total: 20.86 kcal
Atomic # 6 Polarization: 7.66 SS G_CDS: 5.32 Total: 12.98 kcal
Atomic # 7 Polarization: -90.28 SS G_CDS: -3.94 Total: -94.22 kcal
Atomic # 8 Polarization: -53.62 SS G_CDS: -1.71 Total: -55.33 kcal
Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal
Total: -72.47 2.00 -70.47 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000348683025.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.226 kcal
(2) G-P(sol) polarization free energy of solvation -72.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.694 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.471 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.697 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.73 seconds