Wall clock time and date at job start Tue Mar 31 2020 03:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09004 * 109.26720 * 29.49847 * 3 2 1 5 5 C 1.52885 * 109.26558 * 269.99627 * 3 2 1 6 6 C 1.53654 * 109.69864 * 302.01513 * 5 3 2 7 7 N 1.46468 * 107.38804 * 308.94691 * 6 5 3 8 8 C 1.33511 * 129.87446 * 232.09716 * 7 6 5 9 9 O 1.21540 * 124.01834 * 349.04835 * 8 7 6 10 10 N 1.34179 * 111.96596 * 169.07220 * 8 7 6 11 11 C 1.46498 * 124.18798 * 184.43649 * 10 8 7 12 12 C 1.52997 * 109.47064 * 90.02683 * 11 10 8 13 13 C 1.50703 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99633 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99988 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00040 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00075 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46900 * 90.00449 * 17 15 13 19 19 H 1.48503 * 109.47024 * 210.00478 * 17 15 13 20 20 H 1.48501 * 109.46835 * 330.00371 * 17 15 13 21 21 C 1.35015 * 111.61424 * 4.46074 * 10 8 7 22 22 O 1.21232 * 127.18600 * 182.40770 * 21 10 8 23 23 C 1.47950 * 123.26460 * 50.21837 * 7 6 5 24 24 H 1.08994 * 111.66397 * 71.62628 * 23 7 6 25 25 C 1.53164 * 107.14862 * 308.34348 * 23 7 6 26 26 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 29 29 H 1.09003 * 109.43216 * 62.08796 * 5 3 2 30 30 H 1.09008 * 109.43392 * 181.94867 * 5 3 2 31 31 H 1.08999 * 109.86947 * 68.41830 * 6 5 3 32 32 H 1.09003 * 109.87570 * 189.40601 * 6 5 3 33 33 H 1.09003 * 109.46505 * 210.02479 * 11 10 8 34 34 H 1.08996 * 109.47556 * 330.02429 * 11 10 8 35 35 H 1.08996 * 109.47192 * 299.99994 * 12 11 10 36 36 H 1.09005 * 109.47221 * 59.99470 * 12 11 10 37 37 H 0.96993 * 120.00068 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.60217 * 293.44008 * 25 23 7 39 39 H 1.08996 * 109.60269 * 172.96815 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3384 1.9983 0.5067 5 6 2.2155 1.7662 -1.4432 6 6 3.1111 0.7620 -2.1851 7 7 4.3047 0.5496 -1.3632 8 6 5.5961 0.6335 -1.6915 9 8 6.0027 0.7296 -2.8329 10 7 6.3918 0.5984 -0.6117 11 6 7.8467 0.7649 -0.6555 12 6 8.1950 2.2473 -0.5073 13 6 9.6916 2.4185 -0.5517 14 1 10.3304 1.5562 -0.6730 15 6 10.2454 3.6759 -0.4364 16 7 11.5514 3.8254 -0.4757 17 14 9.1405 5.1674 -0.2259 18 1 8.9060 5.4095 1.2203 19 1 9.7949 6.3571 -0.8273 20 1 7.8422 4.9212 -0.9035 21 6 5.6855 0.3903 0.5200 22 8 6.1133 0.3492 1.6536 23 6 4.2494 0.2203 0.0781 24 1 3.8966 -0.7974 0.2450 25 6 3.3479 1.2632 0.7454 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.2496 1.8300 -1.9444 30 1 2.6906 2.7473 -1.4466 31 1 2.5800 -0.1805 -2.3178 32 1 3.3960 1.1666 -3.1564 33 1 8.3014 0.2016 0.1594 34 1 8.2261 0.3960 -1.6083 35 1 7.7402 2.8106 -1.3221 36 1 7.8155 2.6163 0.4456 37 1 11.9409 4.7100 -0.3950 38 1 3.8241 2.2425 0.6975 39 1 3.1778 0.9874 1.7861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349034534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:58 Heat of formation + Delta-G solvation = -83.137750 kcal Electronic energy + Delta-G solvation = -23170.612085 eV Core-core repulsion = 19693.506658 eV Total energy + Delta-G solvation = -3477.105428 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.31100 -39.15319 -38.30301 -36.41280 -35.45548 -33.51637 -32.20898 -31.81310 -30.02880 -27.11688 -25.88376 -25.77411 -23.63422 -22.39120 -21.34740 -20.38469 -19.71907 -17.31022 -17.04398 -16.88838 -16.65456 -15.98553 -15.80061 -15.48690 -15.03222 -14.88210 -14.21915 -14.14822 -14.04987 -13.58093 -13.53615 -13.19813 -12.87096 -12.82237 -12.58972 -12.08000 -11.77353 -11.60212 -11.36654 -11.30197 -11.05708 -10.86456 -10.46712 -10.18307 -10.00110 -9.84552 -9.74266 -9.30545 -9.13958 -8.83877 -8.56101 -6.06814 -4.06138 1.88180 2.34765 3.17113 3.27522 3.30657 3.36811 3.37539 3.41480 4.08573 4.23707 4.43851 4.50444 4.62816 4.67724 4.89093 4.91467 4.95797 5.04442 5.16714 5.27123 5.30684 5.34209 5.45219 5.48152 5.63796 5.73265 5.81259 5.97959 6.11323 6.16756 6.48380 6.63562 6.76829 7.15283 7.19574 7.50822 7.63255 7.73114 8.38538 8.46749 8.95459 9.54330 11.06160 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.004649 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.170812 B = 6021.041850 C = 6092.257137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.092 3.908 4 H 0.071 0.929 5 C -0.162 4.162 6 C 0.161 3.839 7 N -0.627 5.627 8 C 0.705 3.295 9 O -0.540 6.540 10 N -0.575 5.575 11 C 0.128 3.872 12 C -0.023 4.023 13 C -0.520 4.520 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.520 3.480 22 O -0.468 6.468 23 C 0.097 3.903 24 H 0.133 0.867 25 C -0.112 4.112 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.022 0.978 36 H 0.016 0.984 37 H 0.264 0.736 38 H 0.089 0.911 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.841 -6.404 0.624 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.034 3.966 4 H 0.089 0.911 5 C -0.201 4.201 6 C 0.040 3.960 7 N -0.367 5.367 8 C 0.407 3.593 9 O -0.413 6.413 10 N -0.319 5.319 11 C 0.010 3.990 12 C -0.061 4.061 13 C -0.558 4.558 14 H 0.095 0.905 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.706 3.294 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.192 1.192 21 C 0.306 3.694 22 O -0.338 6.338 23 C -0.010 4.010 24 H 0.150 0.850 25 C -0.151 4.151 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -25.099 -6.389 0.494 25.904 hybrid contribution -0.665 1.140 0.130 1.326 sum -25.765 -5.249 0.624 26.301 Atomic orbital electron populations 1.22797 0.81031 1.02828 0.99932 1.87941 1.19623 1.27362 1.95044 1.22058 0.94272 0.85180 0.95084 0.91061 1.22547 1.00827 1.00204 0.96473 1.21303 0.82252 0.99192 0.93253 1.47586 1.05134 1.73548 1.10389 1.15670 0.81139 0.77699 0.84756 1.90965 1.77217 1.54603 1.18534 1.46957 1.11362 1.65770 1.07835 1.21960 0.72205 1.01052 1.03833 1.19881 0.98473 0.90887 0.96836 1.20869 0.89055 0.95044 1.50868 0.90517 1.24938 0.94869 0.98827 0.94359 1.69894 1.10042 1.23411 1.50358 0.86787 0.81338 0.82588 0.78675 1.20149 1.21151 1.19214 1.20763 0.88454 0.75245 0.84891 1.90787 1.76758 1.47015 1.19209 1.22249 0.94270 1.02369 0.82137 0.84979 1.21879 0.93524 0.99337 1.00318 0.94011 0.89598 0.94036 0.89954 0.89988 0.90337 0.88870 0.89372 0.89079 0.95974 0.96572 0.92572 0.89255 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.81 101.05 1.09 1.25 16 2 O -0.38 -3.05 9.16 -35.23 -0.32 -3.37 16 3 C 0.09 0.71 2.87 -26.69 -0.08 0.63 16 4 H 0.07 0.43 7.77 -51.93 -0.40 0.03 16 5 C -0.16 -1.24 5.79 -26.45 -0.15 -1.40 16 6 C 0.16 1.61 6.70 -3.72 -0.02 1.58 16 7 N -0.63 -8.42 3.02 -171.85 -0.52 -8.94 16 8 C 0.70 12.65 8.34 -88.58 -0.74 11.92 16 9 O -0.54 -11.46 17.29 5.33 0.09 -11.37 16 10 N -0.57 -10.74 2.62 -120.99 -0.32 -11.05 16 11 C 0.13 2.75 5.67 -4.04 -0.02 2.73 16 12 C -0.02 -0.57 4.37 -27.88 -0.12 -0.69 16 13 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 14 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 15 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 17 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 21 C 0.52 8.66 7.62 -10.63 -0.08 8.58 16 22 O -0.47 -8.93 17.78 5.60 0.10 -8.83 16 23 C 0.10 1.19 3.53 -67.95 -0.24 0.95 16 24 H 0.13 1.42 7.99 -51.93 -0.41 1.00 16 25 C -0.11 -1.11 5.28 -26.55 -0.14 -1.25 16 26 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.18 7.89 -51.93 -0.41 -0.23 16 29 H 0.08 0.46 7.89 -51.93 -0.41 0.05 16 30 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 32 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 33 H 0.09 1.84 8.03 -51.93 -0.42 1.42 16 34 H 0.09 1.96 7.84 -51.93 -0.41 1.55 16 35 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 36 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -35.07 323.18 -6.68 -41.75 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -5.75 Total: -4.35 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -0.94 Total: 10.87 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.06 Total: -47.25 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.13 Total: -23.57 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.07 -6.68 -41.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349034534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.385 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds