Wall clock time and date at job start Tue Mar 31 2020 03:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09004 * 109.26720 * 29.49847 * 3 2 1 5 5 C 1.52885 * 109.26558 * 269.99627 * 3 2 1 6 6 C 1.53654 * 109.69864 * 302.01513 * 5 3 2 7 7 N 1.46468 * 107.38804 * 308.94691 * 6 5 3 8 8 C 1.33511 * 129.87446 * 232.09716 * 7 6 5 9 9 O 1.21540 * 124.01834 * 349.04835 * 8 7 6 10 10 N 1.34179 * 111.96596 * 169.07220 * 8 7 6 11 11 C 1.46498 * 124.18798 * 184.43649 * 10 8 7 12 12 C 1.52997 * 109.47064 * 90.02683 * 11 10 8 13 13 C 1.50703 * 109.47278 * 179.97438 * 12 11 10 14 14 H 1.07995 * 119.99633 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99988 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00040 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00075 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46900 * 90.00449 * 17 15 13 19 19 H 1.48503 * 109.47024 * 210.00478 * 17 15 13 20 20 H 1.48501 * 109.46835 * 330.00371 * 17 15 13 21 21 C 1.35015 * 111.61424 * 4.46074 * 10 8 7 22 22 O 1.21232 * 127.18600 * 182.40770 * 21 10 8 23 23 C 1.47950 * 123.26460 * 50.21837 * 7 6 5 24 24 H 1.08994 * 111.66397 * 71.62628 * 23 7 6 25 25 C 1.53164 * 107.14862 * 308.34348 * 23 7 6 26 26 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 27 27 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 29 29 H 1.09003 * 109.43216 * 62.08796 * 5 3 2 30 30 H 1.09008 * 109.43392 * 181.94867 * 5 3 2 31 31 H 1.08999 * 109.86947 * 68.41830 * 6 5 3 32 32 H 1.09003 * 109.87570 * 189.40601 * 6 5 3 33 33 H 1.09003 * 109.46505 * 210.02479 * 11 10 8 34 34 H 1.08996 * 109.47556 * 330.02429 * 11 10 8 35 35 H 1.08996 * 109.47192 * 299.99994 * 12 11 10 36 36 H 1.09005 * 109.47221 * 59.99470 * 12 11 10 37 37 H 0.96993 * 120.00068 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.60217 * 293.44008 * 25 23 7 39 39 H 1.08996 * 109.60269 * 172.96815 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3384 1.9983 0.5067 5 6 2.2155 1.7662 -1.4432 6 6 3.1111 0.7620 -2.1851 7 7 4.3047 0.5496 -1.3632 8 6 5.5961 0.6335 -1.6915 9 8 6.0027 0.7296 -2.8329 10 7 6.3918 0.5984 -0.6117 11 6 7.8467 0.7649 -0.6555 12 6 8.1950 2.2473 -0.5073 13 6 9.6916 2.4185 -0.5517 14 1 10.3304 1.5562 -0.6730 15 6 10.2454 3.6759 -0.4364 16 7 11.5514 3.8254 -0.4757 17 14 9.1405 5.1674 -0.2259 18 1 8.9060 5.4095 1.2203 19 1 9.7949 6.3571 -0.8273 20 1 7.8422 4.9212 -0.9035 21 6 5.6855 0.3903 0.5200 22 8 6.1133 0.3492 1.6536 23 6 4.2494 0.2203 0.0781 24 1 3.8966 -0.7974 0.2450 25 6 3.3479 1.2632 0.7454 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 1.2496 1.8300 -1.9444 30 1 2.6906 2.7473 -1.4466 31 1 2.5800 -0.1805 -2.3178 32 1 3.3960 1.1666 -3.1564 33 1 8.3014 0.2016 0.1594 34 1 8.2261 0.3960 -1.6083 35 1 7.7402 2.8106 -1.3221 36 1 7.8155 2.6163 0.4456 37 1 11.9409 4.7100 -0.3950 38 1 3.8241 2.2425 0.6975 39 1 3.1778 0.9874 1.7861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349034534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:57 Heat of formation + Delta-G solvation = -107.850970 kcal Electronic energy + Delta-G solvation = -23171.683731 eV Core-core repulsion = 19693.506658 eV Total energy + Delta-G solvation = -3478.177073 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.59453 -39.90804 -39.69151 -37.44481 -36.98718 -35.33127 -33.67544 -32.75336 -31.65878 -27.67418 -27.53544 -26.72343 -24.80087 -23.56986 -23.10253 -21.51266 -20.84194 -19.24651 -18.34978 -18.05471 -17.76527 -17.09317 -16.65737 -16.46105 -16.38947 -16.03071 -15.77776 -15.38568 -15.23476 -15.10656 -14.79211 -14.63993 -14.18018 -13.78862 -13.65374 -13.35921 -13.02695 -12.82333 -12.74183 -12.23862 -12.16724 -12.08405 -11.97837 -11.88844 -11.78216 -11.54546 -11.11660 -10.84727 -10.76516 -10.47869 -9.95163 -8.36844 -6.42707 0.55325 1.07029 1.28586 1.30795 1.42138 1.90185 1.99669 2.29107 2.82098 2.95194 2.97320 3.43177 3.79882 3.87754 3.93376 4.01954 4.07617 4.28525 4.29505 4.38664 4.52401 4.54314 4.59154 4.65026 4.70297 4.74999 4.83379 4.92354 5.00503 5.04942 5.12807 5.16836 5.24303 5.49389 5.52284 6.11092 6.14349 6.30060 6.32944 6.62368 7.01209 7.21845 8.79350 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025514 B = 0.004649 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.170812 B = 6021.041850 C = 6092.257137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.098 3.902 4 H 0.097 0.903 5 C -0.156 4.156 6 C 0.152 3.848 7 N -0.612 5.612 8 C 0.698 3.302 9 O -0.582 6.582 10 N -0.585 5.585 11 C 0.139 3.861 12 C -0.010 4.010 13 C -0.535 4.535 14 H 0.044 0.956 15 C 0.014 3.986 16 N -0.941 5.941 17 Si 0.947 3.053 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.259 1.259 21 C 0.516 3.484 22 O -0.496 6.496 23 C 0.110 3.890 24 H 0.158 0.842 25 C -0.112 4.112 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.270 0.730 38 H 0.079 0.921 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.735 -5.783 1.159 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.040 3.960 4 H 0.115 0.885 5 C -0.194 4.194 6 C 0.032 3.968 7 N -0.350 5.350 8 C 0.401 3.599 9 O -0.459 6.459 10 N -0.329 5.329 11 C 0.018 3.982 12 C -0.049 4.049 13 C -0.573 4.573 14 H 0.063 0.937 15 C -0.184 4.184 16 N -0.581 5.581 17 Si 0.770 3.230 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.183 1.183 21 C 0.305 3.695 22 O -0.367 6.367 23 C 0.004 3.996 24 H 0.175 0.825 25 C -0.150 4.150 26 H 0.068 0.932 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -29.068 -5.786 1.045 29.657 hybrid contribution 0.548 0.841 -0.036 1.005 sum -28.520 -4.945 1.009 28.963 Atomic orbital electron populations 1.22966 0.79509 1.03643 1.00971 1.87914 1.21270 1.27280 1.95128 1.22002 0.93339 0.85917 0.94762 0.88545 1.22545 1.01463 0.98844 0.96543 1.21684 0.81144 1.01007 0.92918 1.47791 1.04201 1.71736 1.11268 1.15821 0.82447 0.77766 0.83885 1.90930 1.78180 1.56835 1.19927 1.46923 1.10383 1.66343 1.09258 1.21513 0.74627 0.98585 1.03436 1.19678 0.95666 0.93287 0.96225 1.21154 0.91002 0.94373 1.50792 0.93741 1.25881 0.96398 1.02276 0.93887 1.70025 1.12022 1.24597 1.51427 0.85716 0.79444 0.78468 0.79393 1.18734 1.20005 1.18291 1.21511 0.90099 0.73996 0.83917 1.90767 1.77720 1.48174 1.20081 1.22403 0.91347 1.04596 0.81242 0.82498 1.21961 0.94099 0.97743 1.01236 0.93151 0.89029 0.92790 0.86976 0.90623 0.88463 0.89617 0.89325 0.89887 0.96791 0.96534 0.92101 0.90200 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.81 113.37 1.23 1.38 16 2 O -0.40 -4.67 9.16 -148.98 -1.36 -6.03 16 3 C 0.10 1.10 2.87 30.62 0.09 1.19 16 4 H 0.10 0.69 7.77 -2.38 -0.02 0.67 16 5 C -0.16 -1.80 5.79 30.78 0.18 -1.62 16 6 C 0.15 2.62 6.70 86.61 0.58 3.20 16 7 N -0.61 -15.36 3.02 -816.59 -2.47 -17.83 16 8 C 0.70 24.92 8.34 179.63 1.50 26.42 16 9 O -0.58 -25.10 17.29 -3.84 -0.07 -25.16 16 10 N -0.58 -21.93 2.62 -773.61 -2.03 -23.96 16 11 C 0.14 6.14 5.67 86.38 0.49 6.63 16 12 C -0.01 -0.53 4.37 29.85 0.13 -0.40 16 13 C -0.53 -32.18 9.66 25.60 0.25 -31.93 16 14 H 0.04 2.87 7.99 -2.91 -0.02 2.85 16 15 C 0.01 0.83 5.47 84.65 0.46 1.30 16 16 N -0.94 -59.99 13.96 21.45 0.30 -59.69 16 17 Si 0.95 46.08 27.47 68.60 1.88 47.96 16 18 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 20 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 21 C 0.52 16.79 7.62 87.78 0.67 17.46 16 22 O -0.50 -18.73 17.78 -2.88 -0.05 -18.78 16 23 C 0.11 2.46 3.53 44.18 0.16 2.62 16 24 H 0.16 2.86 7.99 -2.39 -0.02 2.85 16 25 C -0.11 -1.87 5.28 30.71 0.16 -1.71 16 26 H 0.05 0.24 8.08 -2.39 -0.02 0.22 16 27 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.21 7.89 -2.38 -0.02 0.19 16 29 H 0.11 0.70 7.89 -2.39 -0.02 0.68 16 30 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.10 1.37 7.93 -2.39 -0.02 1.35 16 32 H 0.09 1.65 8.03 -2.39 -0.02 1.63 16 33 H 0.09 3.84 8.03 -2.39 -0.02 3.82 16 34 H 0.08 3.75 7.84 -2.39 -0.02 3.73 16 35 H 0.01 0.73 7.20 -2.39 -0.02 0.71 16 36 H 0.02 0.83 7.57 -2.38 -0.02 0.82 16 37 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 38 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -77.94 323.18 3.08 -74.86 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 0.99 Total: 4.09 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 5.89 Total: 24.54 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -4.20 Total: -101.48 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -1.48 Total: -49.97 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.88 Total: 47.96 kcal Total: -77.94 3.08 -74.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349034534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.990 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds