Wall clock time and date at job start Tue Mar 31 2020 03:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99667 * 2 1 4 4 H 1.09002 * 109.23480 * 30.51177 * 3 2 1 5 5 C 1.52886 * 109.26260 * 271.02859 * 3 2 1 6 6 C 1.54104 * 109.52769 * 177.21624 * 5 3 2 7 7 N 1.46517 * 107.21847 * 51.36289 * 6 5 3 8 8 C 1.33520 * 129.69924 * 126.03017 * 7 6 5 9 9 O 1.21531 * 124.00422 * 10.74900 * 8 7 6 10 10 N 1.34167 * 111.98453 * 190.78964 * 8 7 6 11 11 C 1.46501 * 124.17559 * 176.52871 * 10 8 7 12 12 C 1.52997 * 109.47437 * 270.02603 * 11 10 8 13 13 C 1.50703 * 109.47110 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99927 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99698 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00101 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99720 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47247 * 359.97438 * 17 15 13 19 19 H 1.48490 * 109.47235 * 120.00306 * 17 15 13 20 20 H 1.48501 * 109.47006 * 240.00419 * 17 15 13 21 21 C 1.35008 * 111.64682 * 356.55219 * 10 8 7 22 22 O 1.21233 * 127.18063 * 177.39197 * 21 10 8 23 23 C 1.47820 * 123.25090 * 309.53754 * 7 6 5 24 24 H 1.08995 * 111.51755 * 288.46665 * 23 7 6 25 25 C 1.53171 * 107.25958 * 51.70742 * 23 7 6 26 26 H 1.08996 * 109.47524 * 299.99835 * 1 2 3 27 27 H 1.08997 * 109.47328 * 60.00386 * 1 2 3 28 28 H 1.09004 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.43800 * 297.48599 * 5 3 2 30 30 H 1.09005 * 109.43500 * 57.39830 * 5 3 2 31 31 H 1.08998 * 110.41866 * 291.67579 * 6 5 3 32 32 H 1.09004 * 109.47683 * 170.51497 * 6 5 3 33 33 H 1.09007 * 109.47082 * 30.02614 * 11 10 8 34 34 H 1.08997 * 109.47384 * 150.02166 * 11 10 8 35 35 H 1.08997 * 109.46849 * 299.99541 * 12 11 10 36 36 H 1.09005 * 109.47154 * 60.00091 * 12 11 10 37 37 H 0.97002 * 119.99405 * 179.97438 * 16 15 13 38 38 H 1.09005 * 109.59786 * 66.70229 * 25 23 7 39 39 H 1.08997 * 109.59408 * 187.16270 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3462 1.9942 0.5225 5 6 2.1916 1.7769 -1.4430 6 6 2.7531 3.2120 -1.4495 7 7 3.9321 3.2203 -0.5795 8 6 5.1791 3.6222 -0.8369 9 8 5.5023 4.2400 -1.8323 10 7 6.0331 3.2622 0.1332 11 6 7.4777 3.5020 0.0886 12 6 8.1726 2.3089 -0.5703 13 6 9.6586 2.5559 -0.6167 14 1 10.0664 3.4720 -0.2159 15 6 10.4973 1.6117 -1.1700 16 7 10.0006 0.4959 -1.6576 17 14 12.3393 1.9176 -1.2268 18 1 12.6408 3.2382 -0.6184 19 1 13.0418 0.8510 -0.4693 20 1 12.7994 1.9070 -2.6387 21 6 5.3969 2.6514 1.1554 22 8 5.8987 2.1757 2.1512 23 6 3.9284 2.6784 0.7957 24 1 3.3614 3.3151 1.4748 25 6 3.3598 1.2580 0.7230 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 2.8829 1.1099 -1.9583 30 1 1.2281 1.7645 -1.9525 31 1 2.0089 3.9132 -1.0719 32 1 3.0399 3.4855 -2.4649 33 1 7.6786 4.4041 -0.4893 34 1 7.8565 3.6285 1.1028 35 1 7.9718 1.4068 0.0077 36 1 7.7939 2.1825 -1.5846 37 1 10.5908 -0.1681 -2.0471 38 1 4.0475 0.6166 0.1718 39 1 3.2209 0.8678 1.7312 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349034539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:05 Heat of formation + Delta-G solvation = -113.271600 kcal Electronic energy + Delta-G solvation = -22902.031667 eV Core-core repulsion = 19423.619538 eV Total energy + Delta-G solvation = -3478.412129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.60577 -39.83810 -39.68886 -37.70398 -36.99507 -35.42384 -33.58009 -32.74250 -31.33100 -27.92745 -27.38599 -26.30766 -24.95230 -23.48961 -23.37748 -21.75096 -20.97753 -18.90220 -18.30991 -18.10978 -17.71794 -17.24472 -16.68777 -16.52220 -16.27607 -16.19658 -15.81257 -15.46874 -15.13454 -14.96365 -14.77919 -14.45159 -14.06123 -13.86362 -13.61498 -13.31879 -12.92595 -12.85093 -12.73480 -12.40995 -12.15763 -12.15343 -12.08119 -11.89451 -11.70387 -11.41914 -11.19976 -10.70704 -10.65682 -10.50254 -10.04841 -8.28011 -6.41744 0.53058 1.04164 1.38879 1.40220 1.54067 1.92311 1.99019 2.37929 2.65986 2.94700 3.06231 3.49165 3.74242 3.82797 3.88934 3.96234 4.12426 4.22192 4.38903 4.39121 4.46053 4.52142 4.59061 4.64607 4.67905 4.69927 4.82698 4.91893 4.97010 5.05659 5.19200 5.31464 5.36327 5.48862 5.68468 6.04114 6.10404 6.29451 6.32512 6.72449 7.00164 7.28522 8.85273 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.024488 B = 0.004165 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.130405 B = 6720.792301 C = 6909.944593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.410 6.410 3 C 0.100 3.900 4 H 0.106 0.894 5 C -0.157 4.157 6 C 0.150 3.850 7 N -0.616 5.616 8 C 0.699 3.301 9 O -0.580 6.580 10 N -0.585 5.585 11 C 0.135 3.865 12 C 0.025 3.975 13 C -0.545 4.545 14 H 0.072 0.928 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.977 3.023 18 H -0.256 1.256 19 H -0.276 1.276 20 H -0.277 1.277 21 C 0.516 3.484 22 O -0.497 6.497 23 C 0.111 3.889 24 H 0.184 0.816 25 C -0.113 4.113 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.091 0.909 35 H -0.012 1.012 36 H -0.015 1.015 37 H 0.266 0.734 38 H 0.048 0.952 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.082 4.293 4.786 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.329 6.329 3 C 0.042 3.958 4 H 0.124 0.876 5 C -0.196 4.196 6 C 0.031 3.969 7 N -0.355 5.355 8 C 0.401 3.599 9 O -0.457 6.457 10 N -0.329 5.329 11 C 0.014 3.986 12 C -0.013 4.013 13 C -0.583 4.583 14 H 0.091 0.909 15 C -0.199 4.199 16 N -0.574 5.574 17 Si 0.800 3.200 18 H -0.180 1.180 19 H -0.201 1.201 20 H -0.203 1.203 21 C 0.304 3.696 22 O -0.369 6.369 23 C 0.004 3.996 24 H 0.200 0.800 25 C -0.152 4.152 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.006 0.994 36 H 0.004 0.996 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.532 4.104 4.604 24.327 hybrid contribution 1.318 -0.280 -0.443 1.419 sum -22.213 3.824 4.161 22.921 Atomic orbital electron populations 1.23020 0.79066 1.03719 1.01458 1.87944 1.21838 1.27957 1.95162 1.21983 0.93315 0.85594 0.94918 0.87620 1.22642 1.03269 0.95602 0.98040 1.21968 0.83321 0.97526 0.94117 1.47882 1.08614 1.63592 1.15393 1.15839 0.81952 0.79771 0.82291 1.90919 1.80355 1.45002 1.29448 1.46919 1.10603 1.54686 1.20667 1.21714 0.74259 1.00055 1.02534 1.19170 0.95609 0.92671 0.93831 1.21504 0.91992 1.04794 1.40025 0.90940 1.26086 1.04991 0.94489 0.94316 1.70135 1.37436 1.09297 1.40482 0.85226 0.77821 0.78905 0.78042 1.17953 1.20147 1.20268 1.21437 0.90813 0.75513 0.81806 1.90765 1.74944 1.43460 1.27729 1.22515 0.92494 0.98842 0.85710 0.79972 1.21794 0.97022 0.92539 1.03824 0.92241 0.92509 0.89311 0.93253 0.86765 0.85771 0.89437 0.89535 0.89055 0.99359 0.99642 0.92573 0.93337 0.87328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.80 113.37 1.22 1.45 16 2 O -0.41 -7.39 10.33 -148.98 -1.54 -8.93 16 3 C 0.10 1.48 2.48 30.62 0.08 1.55 16 4 H 0.11 0.79 7.78 -2.39 -0.02 0.78 16 5 C -0.16 -2.39 5.69 30.93 0.18 -2.21 16 6 C 0.15 2.44 7.03 86.75 0.61 3.05 16 7 N -0.62 -15.56 3.02 -815.90 -2.46 -18.03 16 8 C 0.70 25.98 8.35 179.64 1.50 27.48 16 9 O -0.58 -25.88 17.27 -3.81 -0.07 -25.95 16 10 N -0.58 -23.17 2.62 -773.62 -2.03 -25.20 16 11 C 0.13 6.19 5.66 86.38 0.49 6.68 16 12 C 0.03 1.44 5.30 29.85 0.16 1.60 16 13 C -0.54 -32.38 9.11 25.60 0.23 -32.15 16 14 H 0.07 4.02 7.74 -2.91 -0.02 4.00 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -59.43 13.29 21.45 0.28 -59.15 16 17 Si 0.98 45.61 29.54 68.60 2.03 47.63 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 21 C 0.52 17.73 7.62 87.78 0.67 18.40 16 22 O -0.50 -19.96 17.78 -2.88 -0.05 -20.01 16 23 C 0.11 2.42 3.91 44.21 0.17 2.60 16 24 H 0.18 2.20 8.14 -2.39 -0.02 2.18 16 25 C -0.11 -2.38 5.16 30.71 0.16 -2.22 16 26 H 0.06 0.38 8.08 -2.39 -0.02 0.36 16 27 H 0.06 0.38 7.71 -2.39 -0.02 0.36 16 28 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.11 1.05 7.71 -2.38 -0.02 1.03 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.69 8.00 -2.38 -0.02 1.67 16 33 H 0.09 3.90 7.85 -2.38 -0.02 3.89 16 34 H 0.09 3.97 8.03 -2.39 -0.02 3.95 16 35 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 36 H -0.01 -0.95 8.14 -2.38 -0.02 -0.97 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.05 1.40 8.09 -2.38 -0.02 1.38 16 39 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -82.66 328.03 3.13 -79.52 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 1.04 Total: 3.45 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 5.93 Total: 26.65 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -4.21 Total: -102.37 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -1.66 Total: -54.89 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -82.66 3.13 -79.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349034539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.747 kcal (2) G-P(sol) polarization free energy of solvation -82.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds