Wall clock time and date at job start Tue Mar 31 2020 02:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99479 * 2 1 4 4 H 1.48511 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47050 * 299.99845 * 3 2 1 6 6 H 1.48494 * 109.47346 * 60.00209 * 3 2 1 7 7 C 1.37876 * 120.00426 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00126 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99827 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47088 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46967 * 180.02562 * 10 9 7 12 12 C 1.33792 * 124.17753 * 90.03139 * 11 10 9 13 13 O 1.21540 * 123.76610 * 359.95659 * 12 11 10 14 14 N 1.34521 * 112.45802 * 179.97438 * 12 11 10 15 15 C 1.47307 * 106.61939 * 359.97438 * 14 12 11 16 16 H 1.09006 * 110.59284 * 118.53407 * 15 14 12 17 17 C 1.53003 * 110.60162 * 241.31919 * 15 14 12 18 18 C 1.53182 * 109.53868 * 58.37504 * 17 15 14 19 19 C 1.53100 * 109.15293 * 183.23744 * 18 17 15 20 20 O 1.42907 * 109.48572 * 57.47577 * 19 18 17 21 21 C 1.42905 * 114.09671 * 298.88304 * 20 19 18 22 22 C 1.53094 * 109.41241 * 61.16136 * 21 20 19 23 23 C 1.34766 * 124.17700 * 269.72726 * 11 10 9 24 24 O 1.21232 * 127.16158 * 0.02562 * 23 11 10 25 25 H 0.97003 * 120.00835 * 359.97438 * 1 2 3 26 26 H 1.09011 * 109.47037 * 60.00354 * 9 7 2 27 27 H 1.09005 * 109.47722 * 300.00599 * 9 7 2 28 28 H 1.08994 * 109.46812 * 60.00622 * 10 9 7 29 29 H 1.08997 * 109.47178 * 300.00244 * 10 9 7 30 30 H 0.97006 * 126.68877 * 179.97438 * 14 12 11 31 31 H 1.08997 * 109.53747 * 178.54716 * 17 15 14 32 32 H 1.09000 * 109.51961 * 303.05213 * 18 17 15 33 33 H 1.08997 * 109.52182 * 63.24322 * 18 17 15 34 34 H 1.09000 * 109.40956 * 297.49220 * 19 18 17 35 35 H 1.08997 * 109.48537 * 177.49987 * 19 18 17 36 36 H 1.08994 * 109.48149 * 301.17531 * 21 20 19 37 37 H 1.08999 * 109.47801 * 181.13910 * 21 20 19 38 38 H 1.09002 * 109.52046 * 182.48327 * 22 21 20 39 39 H 1.08998 * 109.57223 * 62.32688 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8901 2.3965 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 7 1.5129 -4.9307 -0.0024 12 6 1.1372 -5.5811 -1.1096 13 8 1.3648 -5.1850 -2.2359 14 7 0.4791 -6.7223 -0.8369 15 6 0.4171 -6.8324 0.6307 16 1 -0.6183 -6.8337 0.9716 17 6 1.1404 -8.0937 1.1070 18 6 2.5992 -8.0544 0.6414 19 6 3.2930 -9.3558 1.0523 20 8 2.5903 -10.4676 0.4933 21 6 1.2350 -10.5816 0.9321 22 6 0.4580 -9.3304 0.5144 23 6 1.1395 -5.5899 1.1122 24 8 1.3383 -5.2573 2.2609 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8726 -3.6046 0.8877 29 1 2.8714 -3.6038 -0.8922 30 1 0.1162 -7.3501 -1.4812 31 1 1.1062 -8.1446 2.1952 32 1 2.6327 -7.9519 -0.4433 33 1 3.1065 -7.2078 1.1040 34 1 3.2961 -9.4371 2.1392 35 1 4.3191 -9.3526 0.6849 36 1 1.2113 -10.6789 2.0174 37 1 0.7788 -11.4613 0.4780 38 1 -0.5645 -9.3956 0.8864 39 1 0.4460 -9.2540 -0.5728 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349127593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:01 Heat of formation + Delta-G solvation = -128.346450 kcal Electronic energy + Delta-G solvation = -22946.640793 eV Core-core repulsion = 19467.574969 eV Total energy + Delta-G solvation = -3479.065824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.60281 -40.25123 -39.63567 -37.47385 -36.87240 -35.23868 -34.05568 -32.11124 -31.75635 -29.08320 -27.31677 -25.09910 -24.62377 -24.02334 -23.15919 -21.32114 -20.89113 -19.15841 -18.65087 -18.01843 -17.69042 -16.91528 -16.89146 -16.57841 -16.45972 -16.22378 -15.69360 -15.62604 -15.38596 -15.02883 -14.91418 -14.43259 -14.32689 -13.77107 -13.51292 -13.23644 -12.91860 -12.73842 -12.38740 -12.28143 -12.16048 -12.10504 -12.02071 -11.73975 -11.42711 -11.39158 -11.09773 -10.74754 -10.64073 -10.57747 -10.31791 -8.27033 -6.40059 0.56990 1.22754 1.40102 1.40706 1.54458 1.97298 2.18020 2.38810 2.90105 2.98707 3.07407 3.36915 3.60461 3.83668 3.96259 4.03704 4.20170 4.33575 4.34596 4.39500 4.47136 4.54212 4.60146 4.65168 4.70339 4.77027 4.81791 4.88924 5.05646 5.13134 5.31154 5.33558 5.40370 5.69978 5.79988 6.05926 6.11910 6.29269 6.37912 6.74139 7.10773 7.29947 8.86050 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.035832 B = 0.003838 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.245171 B = 7294.202918 C = 7400.677436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.974 3.026 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.024 3.976 10 C 0.135 3.865 11 N -0.579 5.579 12 C 0.697 3.303 13 O -0.584 6.584 14 N -0.699 5.699 15 C 0.111 3.889 16 H 0.162 0.838 17 C -0.080 4.080 18 C -0.159 4.159 19 C 0.068 3.932 20 O -0.402 6.402 21 C 0.055 3.945 22 C -0.143 4.143 23 C 0.517 3.483 24 O -0.498 6.498 25 H 0.266 0.734 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.451 0.549 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -23.541 3.509 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.181 1.181 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.089 0.911 9 C -0.014 4.014 10 C 0.014 3.986 11 N -0.323 5.323 12 C 0.398 3.602 13 O -0.461 6.461 14 N -0.365 5.365 15 C 0.003 3.997 16 H 0.179 0.821 17 C -0.099 4.099 18 C -0.197 4.197 19 C -0.008 4.008 20 O -0.322 6.322 21 C -0.021 4.021 22 C -0.181 4.181 23 C 0.306 3.694 24 O -0.370 6.370 25 H 0.074 0.926 26 H 0.007 0.993 27 H 0.010 0.990 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.299 0.701 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.839 -23.097 3.425 23.364 hybrid contribution -0.080 1.399 -0.248 1.424 sum 0.759 -21.697 3.177 21.942 Atomic orbital electron populations 1.70113 1.08040 1.28031 1.50999 1.26036 0.95822 1.03706 0.94172 0.85265 0.79145 0.77999 0.77825 1.18121 1.20346 1.20134 1.21496 0.93897 0.91352 1.51581 0.91139 1.19181 0.94420 0.92953 0.94821 1.21699 0.94433 0.79249 1.03212 1.46672 1.53395 1.23697 1.08564 1.16061 0.78794 0.81668 0.83657 1.90972 1.61497 1.71421 1.22162 1.45373 1.59831 1.23314 1.08003 1.22313 1.03576 0.93141 0.80691 0.82115 1.21451 0.94031 0.92025 1.02422 1.22295 0.96207 0.99202 1.01976 1.22515 0.95930 0.84094 0.98304 1.87932 1.25607 1.47835 1.70776 1.22791 0.81149 0.98199 0.99992 1.22246 1.01074 0.92679 1.02081 1.21489 0.77819 0.85737 0.84381 1.90766 1.55224 1.72057 1.18943 0.92565 0.99287 0.98974 0.89189 0.89821 0.70076 0.87285 0.91760 0.92594 0.91782 0.88586 0.91801 0.87047 0.87278 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.02 13.29 21.45 0.28 -57.74 16 2 C 0.00 0.05 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.55 -31.75 9.11 25.60 0.23 -31.51 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.34 5.30 29.85 0.16 1.50 16 10 C 0.13 5.98 5.64 86.38 0.49 6.46 16 11 N -0.58 -21.63 2.60 -773.13 -2.01 -23.64 16 12 C 0.70 24.36 8.51 179.44 1.53 25.89 16 13 O -0.58 -25.41 17.48 -3.84 -0.07 -25.48 16 14 N -0.70 -15.43 5.07 -459.61 -2.33 -17.76 16 15 C 0.11 2.18 3.49 44.37 0.15 2.33 16 16 H 0.16 2.21 8.14 -2.38 -0.02 2.19 16 17 C -0.08 -1.17 2.25 -10.67 -0.02 -1.19 16 18 C -0.16 -2.98 4.89 30.69 0.15 -2.83 16 19 C 0.07 1.09 6.84 72.02 0.49 1.58 16 20 O -0.40 -6.85 10.77 -148.98 -1.60 -8.45 16 21 C 0.05 0.56 6.84 72.01 0.49 1.05 16 22 C -0.14 -1.29 5.33 30.68 0.16 -1.13 16 23 C 0.52 16.54 6.34 87.94 0.56 17.10 16 24 O -0.50 -18.73 17.76 -2.88 -0.05 -18.78 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 27 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 28 H 0.09 3.81 8.00 -2.39 -0.02 3.79 16 29 H 0.08 3.69 7.86 -2.39 -0.02 3.67 16 30 H 0.45 7.07 8.17 -92.70 -0.76 6.32 16 31 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.39 7.49 -2.39 -0.02 1.37 16 33 H 0.06 1.26 7.30 -2.39 -0.02 1.25 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.08 0.72 7.08 -2.39 -0.02 0.70 16 Total: -1.00 -78.49 323.04 1.41 -77.08 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.31 Total: 8.06 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 4.85 Total: 19.78 kcal Atomic # 7 Polarization: -95.08 SS G_CDS: -4.06 Total: -99.14 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -1.72 Total: -52.71 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -78.49 1.41 -77.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349127593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.266 kcal (2) G-P(sol) polarization free energy of solvation -78.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds