Wall clock time and date at job start Tue Mar 31 2020 03:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99574 * 2 1 4 4 N 1.34772 * 120.00228 * 180.02562 * 2 1 3 5 5 C 1.47422 * 125.65041 * 359.94374 * 4 2 1 6 6 C 1.54916 * 104.83553 * 155.91646 * 5 4 2 7 7 C 1.55160 * 101.57873 * 37.01335 * 6 5 4 8 8 C 1.47023 * 125.64948 * 180.02562 * 4 2 1 9 9 H 1.09005 * 110.01263 * 300.50240 * 8 4 2 10 10 C 1.50698 * 109.88422 * 61.59421 * 8 4 2 11 11 O 1.21278 * 119.99684 * 17.80966 * 10 8 4 12 12 N 1.34781 * 120.00169 * 197.81044 * 10 8 4 13 13 C 1.47581 * 134.49052 * 179.97438 * 12 10 8 14 14 C 1.53952 * 86.11467 * 155.35897 * 13 12 10 15 15 O 1.42902 * 113.74169 * 269.15282 * 14 13 12 16 16 C 1.50695 * 113.74160 * 137.95058 * 14 13 12 17 17 H 1.08008 * 120.00209 * 4.91442 * 16 14 13 18 18 C 1.37871 * 120.00143 * 184.91309 * 16 14 13 19 19 N 1.31510 * 120.00152 * 13.83438 * 18 16 14 20 20 Si 1.86803 * 120.00286 * 193.83630 * 18 16 14 21 21 H 1.48501 * 109.47426 * 180.02562 * 20 18 16 22 22 H 1.48509 * 109.46845 * 299.99934 * 20 18 16 23 23 H 1.48494 * 109.47105 * 59.99457 * 20 18 16 24 24 C 1.47575 * 134.49194 * 359.97438 * 12 10 8 25 25 H 1.09010 * 109.46957 * 239.99464 * 1 2 3 26 26 H 1.08991 * 109.47440 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46891 * 120.00121 * 1 2 3 28 28 H 1.09007 * 110.36467 * 37.08160 * 5 4 2 29 29 H 1.08999 * 110.37137 * 274.76120 * 5 4 2 30 30 H 1.08994 * 111.00292 * 278.94235 * 6 5 4 31 31 H 1.08994 * 111.03573 * 155.09537 * 6 5 4 32 32 H 1.08995 * 110.72054 * 206.13556 * 7 6 5 33 33 H 1.09000 * 110.71964 * 82.86082 * 7 6 5 34 34 H 1.09000 * 113.77345 * 41.05890 * 13 12 10 35 35 H 1.08997 * 113.87010 * 269.66910 * 13 12 10 36 36 H 0.96700 * 113.99904 * 171.44722 * 15 14 13 37 37 H 0.97008 * 120.00105 * 5.88155 * 19 18 16 38 38 H 1.09008 * 113.76855 * 90.34215 * 24 12 10 39 39 H 1.09004 * 113.77292 * 318.94822 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.5731 -2.5102 0.0001 6 6 2.6546 -3.4353 -0.6119 7 6 3.9550 -2.8232 -0.0273 8 6 3.6440 -1.3118 -0.0001 9 1 4.0667 -0.8306 -0.8821 10 6 4.2199 -0.6922 1.2471 11 8 3.5037 -0.4709 2.2005 12 7 5.5308 -0.3840 1.3030 13 6 6.4100 0.2137 2.3266 14 6 7.5616 -0.5200 1.6155 15 8 7.8164 -1.8278 2.1319 16 6 8.8119 0.3088 1.4717 17 1 8.8648 1.2891 1.9219 18 6 9.8885 -0.1843 0.7655 19 7 9.7416 -1.2399 -0.0050 20 14 11.5557 0.6469 0.9029 21 1 12.5382 -0.0704 0.0512 22 1 11.4447 2.0568 0.4497 23 1 12.0093 0.6157 2.3165 24 6 6.6634 -0.5088 0.3652 25 1 -0.3633 -0.5140 0.8900 26 1 -0.3634 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.6734 -2.5198 -0.6154 29 1 1.3403 -2.8209 1.0186 30 1 2.6496 -3.3754 -1.7002 31 1 2.5232 -4.4646 -0.2786 32 1 4.8050 -3.0305 -0.6774 33 1 4.1383 -3.1971 0.9800 34 1 6.2167 -0.1470 3.3368 35 1 6.4791 1.3000 2.2688 36 1 8.4465 -2.3415 1.6084 37 1 8.8601 -1.6203 -0.1438 38 1 6.8060 0.3653 -0.2703 39 1 6.6724 -1.4464 -0.1907 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408387410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:01 Heat of formation + Delta-G solvation = -79.798571 kcal Electronic energy + Delta-G solvation = -23226.822436 eV Core-core repulsion = 19749.861806 eV Total energy + Delta-G solvation = -3476.960630 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52628 -39.21752 -37.65522 -36.74461 -34.26963 -32.38623 -32.13762 -30.36797 -29.24602 -27.87052 -25.50339 -24.98459 -23.64096 -21.63897 -20.69928 -19.45449 -18.32969 -17.94252 -17.14896 -16.85528 -15.75927 -15.58813 -15.03870 -14.81600 -14.61672 -14.24556 -13.90731 -13.79245 -13.40328 -13.14011 -12.83874 -12.69780 -12.56606 -12.38953 -12.10196 -12.03006 -11.67805 -11.47014 -11.42647 -11.12063 -11.01581 -10.91581 -10.54901 -10.21415 -9.82522 -9.60015 -9.32567 -8.84969 -8.66374 -8.34402 -7.85965 -6.68687 -4.47339 2.61378 2.88087 3.17129 3.31934 3.35434 3.53412 3.55382 4.30339 4.32760 4.38711 4.69788 4.76325 4.83671 4.92497 5.12427 5.13813 5.22532 5.27913 5.34289 5.42970 5.58875 5.67603 5.69482 5.70862 5.76827 5.97085 6.11732 6.13609 6.17055 6.38119 6.39162 6.54880 6.80383 7.49909 7.66033 8.10298 8.21401 8.37847 8.45482 8.70151 8.83559 9.22584 10.62899 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029452 B = 0.004527 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.460428 B = 6183.634936 C = 6541.169727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.529 3.471 3 O -0.536 6.536 4 N -0.603 5.603 5 C 0.101 3.899 6 C -0.130 4.130 7 C -0.119 4.119 8 C 0.125 3.875 9 H 0.093 0.907 10 C 0.528 3.472 11 O -0.551 6.551 12 N -0.631 5.631 13 C 0.125 3.875 14 C 0.218 3.782 15 O -0.566 6.566 16 C -0.616 4.616 17 H 0.065 0.935 18 C 0.038 3.962 19 N -0.898 5.898 20 Si 1.066 2.934 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.070 3.930 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.374 0.626 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.802 -5.539 -4.413 15.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.318 3.682 3 O -0.412 6.412 4 N -0.338 5.338 5 C -0.022 4.022 6 C -0.168 4.168 7 C -0.157 4.157 8 C 0.017 3.983 9 H 0.111 0.889 10 C 0.316 3.684 11 O -0.430 6.430 12 N -0.365 5.365 13 C 0.003 3.997 14 C 0.177 3.823 15 O -0.373 6.373 16 C -0.654 4.654 17 H 0.083 0.917 18 C -0.168 4.168 19 N -0.535 5.535 20 Si 0.893 3.107 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.053 4.053 25 H 0.106 0.894 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.223 0.777 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.996 -4.738 -3.935 14.382 hybrid contribution -1.262 0.000 -0.010 1.262 sum -14.258 -4.739 -3.946 15.535 Atomic orbital electron populations 1.21860 0.91307 1.05302 1.03927 1.20448 0.90305 0.82005 0.75433 1.90747 1.70686 1.30626 1.49163 1.48275 1.05398 1.06246 1.73920 1.22362 0.96734 0.81787 1.01305 1.22793 0.93861 0.99201 1.00983 1.22581 0.98756 0.91105 1.03256 1.21393 0.82010 0.97620 0.97252 0.88891 1.20250 0.80454 0.78691 0.89003 1.90614 1.58399 1.55678 1.38317 1.50110 1.06025 1.60420 1.19972 1.23270 0.85361 0.97863 0.93225 1.20125 0.91971 0.82310 0.87909 1.86252 1.66805 1.28245 1.55968 1.22241 1.00122 1.04806 1.38261 0.91672 1.25965 1.03791 0.95490 0.91536 1.70948 1.26439 1.22223 1.33875 0.83589 0.74875 0.75537 0.76703 1.20562 1.21109 1.21007 1.24473 0.83377 1.00755 0.96690 0.89430 0.89023 0.89623 0.90171 0.91011 0.90168 0.89287 0.88938 0.89848 0.91152 0.89438 0.77685 0.92101 0.89584 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.33 36.00 0.34 -1.35 16 2 C 0.53 8.57 7.34 -10.99 -0.08 8.49 16 3 O -0.54 -11.45 16.87 5.56 0.09 -11.36 16 4 N -0.60 -8.96 2.76 -164.31 -0.45 -9.41 16 5 C 0.10 1.00 6.69 -2.53 -0.02 0.98 16 6 C -0.13 -1.15 7.09 -24.58 -0.17 -1.33 16 7 C -0.12 -1.52 6.47 -24.89 -0.16 -1.68 16 8 C 0.12 2.07 3.01 -68.10 -0.20 1.87 16 9 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 10 C 0.53 11.37 6.51 -10.98 -0.07 11.29 16 11 O -0.55 -13.54 16.82 5.56 0.09 -13.45 16 12 N -0.63 -13.89 3.61 -178.31 -0.64 -14.53 16 13 C 0.12 2.86 8.23 -2.97 -0.02 2.84 16 14 C 0.22 5.20 1.08 -90.84 -0.10 5.10 16 15 O -0.57 -13.79 13.45 -35.23 -0.47 -14.26 16 16 C -0.62 -15.84 8.56 -34.44 -0.29 -16.13 16 17 H 0.07 1.68 7.85 -52.48 -0.41 1.26 16 18 C 0.04 0.96 5.26 -17.82 -0.09 0.87 16 19 N -0.90 -23.42 12.80 55.43 0.71 -22.71 16 20 Si 1.07 22.89 29.93 -169.99 -5.09 17.80 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 C 0.07 1.51 7.05 -2.98 -0.02 1.48 16 25 H 0.09 0.78 8.14 -51.92 -0.42 0.35 16 26 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 27 H 0.09 0.62 7.85 -51.93 -0.41 0.21 16 28 H 0.08 0.55 7.48 -51.93 -0.39 0.16 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.08 1.19 7.84 -51.93 -0.41 0.78 16 34 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 35 H 0.09 1.93 8.09 -51.93 -0.42 1.51 16 36 H 0.37 8.84 6.95 45.56 0.32 9.15 16 37 H 0.27 6.72 5.52 -40.82 -0.23 6.50 16 38 H 0.09 1.87 8.09 -51.92 -0.42 1.45 16 39 H 0.06 1.28 7.80 -51.93 -0.41 0.88 16 LS Contribution 326.76 15.07 4.92 4.92 Total: -1.00 -34.11 326.76 -6.69 -40.80 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.95 Total: 9.74 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -0.91 Total: 12.44 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.39 Total: -46.65 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -0.29 Total: -39.06 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.09 Total: 17.80 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.11 -6.69 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408387410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.998 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds