Wall clock time and date at job start Tue Mar 31 2020 03:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00098 * 2 1 4 4 C 1.52994 * 109.47070 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47081 * 65.00102 * 4 3 2 6 6 C 1.36938 * 119.99773 * 89.99770 * 5 4 3 7 7 H 1.08005 * 119.99928 * 212.66601 * 6 5 4 8 8 C 1.38806 * 120.00406 * 32.95080 * 6 5 4 9 9 N 1.31616 * 120.00122 * 207.31121 * 8 6 5 10 10 Si 1.86799 * 119.99952 * 27.30342 * 8 6 5 11 11 H 1.48503 * 109.47380 * 0.70060 * 10 8 6 12 12 H 1.48500 * 109.47325 * 120.70448 * 10 8 6 13 13 H 1.48501 * 109.47288 * 240.70081 * 10 8 6 14 14 C 1.46498 * 119.99736 * 269.99613 * 5 4 3 15 15 C 1.50697 * 109.47180 * 264.79869 * 14 5 4 16 16 C 1.35489 * 126.08344 * 266.31918 * 15 14 5 17 17 N 1.34953 * 108.98769 * 179.83137 * 16 15 14 18 18 H 0.96999 * 125.63572 * 180.15437 * 17 16 15 19 19 C 1.37696 * 108.73013 * 0.43328 * 17 16 15 20 20 C 1.46495 * 126.26297 * 179.73286 * 19 17 16 21 21 O 1.21619 * 119.99696 * 180.02562 * 20 19 17 22 22 O 1.34885 * 120.00028 * 0.02562 * 20 19 17 23 23 C 1.45201 * 116.99892 * 179.97438 * 22 20 19 24 24 C 1.37994 * 107.47322 * 359.73655 * 19 17 16 25 25 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47681 * 299.99964 * 1 2 3 27 27 H 1.08996 * 109.46894 * 60.00499 * 1 2 3 28 28 H 1.09004 * 109.47094 * 59.99246 * 3 2 1 29 29 H 1.09000 * 109.46575 * 299.99658 * 3 2 1 30 30 H 1.08995 * 109.47641 * 305.00025 * 4 3 2 31 31 H 1.09004 * 109.46834 * 184.99768 * 4 3 2 32 32 H 0.96999 * 120.00202 * 359.97438 * 9 8 6 33 33 H 1.09000 * 109.47110 * 24.80272 * 14 5 4 34 34 H 1.09003 * 109.46631 * 144.80190 * 14 5 4 35 35 H 1.08002 * 125.50330 * 359.97438 * 16 15 14 36 36 H 1.09001 * 109.47681 * 300.00173 * 23 22 20 37 37 H 1.08994 * 109.47315 * 60.00256 * 23 22 20 38 38 H 1.09001 * 109.47203 * 180.02562 * 23 22 20 39 39 H 1.08003 * 126.51627 * 179.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2679 1.3452 -2.3371 7 1 4.0798 0.9754 -3.3343 8 6 4.8103 2.6102 -2.1569 9 7 4.6064 3.5481 -3.0575 10 14 5.8295 2.9813 -0.6361 11 1 5.9230 1.7623 0.2068 12 1 7.1923 3.4062 -1.0451 13 1 5.1833 4.0707 0.1391 14 6 4.1062 -0.8926 -1.3402 15 6 5.5343 -1.2876 -1.0654 16 6 6.5022 -1.4787 -1.9941 17 7 7.6488 -1.8198 -1.3695 18 1 8.4946 -2.0096 -1.8047 19 6 7.4181 -1.8599 -0.0126 20 6 8.3984 -2.1940 1.0236 21 8 8.0692 -2.1950 2.1944 22 8 9.6659 -2.5005 0.6790 23 6 10.5832 -2.8207 1.7581 24 6 6.0945 -1.5279 0.1927 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9784 2.1765 0.0902 32 1 4.0774 3.3553 -3.8473 33 1 3.4517 -1.3614 -0.6054 34 1 3.8242 -1.2217 -2.3404 35 1 6.3769 -1.3728 -3.0616 36 1 10.6612 -1.9688 2.4336 37 1 10.2114 -3.6862 2.3063 38 1 11.5660 -3.0470 1.3445 39 1 5.5876 -1.4659 1.1443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453599070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:36 Heat of formation + Delta-G solvation = -56.970603 kcal Electronic energy + Delta-G solvation = -22563.680427 eV Core-core repulsion = 19087.709692 eV Total energy + Delta-G solvation = -3475.970735 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01585 -39.67143 -37.46901 -36.30742 -35.50290 -32.03842 -31.02615 -29.74754 -28.73634 -27.47969 -25.93805 -25.21876 -23.11825 -22.54142 -20.94797 -19.92019 -19.29192 -17.93989 -17.23658 -16.91075 -16.33793 -15.90646 -15.41218 -15.36287 -14.57635 -14.27637 -14.20489 -13.71639 -13.52359 -13.31776 -13.04676 -12.91069 -12.69535 -12.22482 -12.07186 -11.84327 -11.50404 -11.30360 -11.08853 -10.85086 -10.67325 -10.58238 -10.37653 -10.06997 -9.58347 -9.22075 -9.01503 -8.44744 -8.35008 -7.79581 -6.92826 -6.22890 -3.27282 1.51398 2.72387 3.09365 3.46366 3.51651 3.52451 3.59259 3.75746 4.43442 4.62584 4.99204 5.03121 5.07792 5.18795 5.40595 5.50815 5.54919 5.62597 5.70264 5.75963 5.87163 5.93908 6.08760 6.14136 6.19819 6.24229 6.36263 6.52564 6.59286 6.70261 6.77219 6.95602 7.25323 7.42651 7.77204 7.78862 7.89748 8.16555 8.54443 9.10991 9.70430 10.31289 11.12644 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.005578 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.026049 B = 5018.474121 C = 5785.216351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.042 3.958 4 C 0.156 3.844 5 N -0.588 5.588 6 C -0.343 4.343 7 H 0.062 0.938 8 C -0.004 4.004 9 N -0.913 5.913 10 Si 1.040 2.960 11 H -0.274 1.274 12 H -0.304 1.304 13 H -0.295 1.295 14 C 0.215 3.785 15 C -0.173 4.173 16 C 0.053 3.947 17 N -0.534 5.534 18 H 0.416 0.584 19 C -0.073 4.073 20 C 0.539 3.461 21 O -0.509 6.509 22 O -0.369 6.369 23 C 0.040 3.960 24 C -0.076 4.076 25 H 0.075 0.925 26 H 0.030 0.970 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.264 0.736 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.170 0.830 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -11.739 5.589 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.037 4.037 4 C 0.030 3.970 5 N -0.309 5.309 6 C -0.472 4.472 7 H 0.080 0.920 8 C -0.207 4.207 9 N -0.552 5.552 10 Si 0.871 3.129 11 H -0.199 1.199 12 H -0.232 1.232 13 H -0.223 1.223 14 C 0.088 3.912 15 C -0.181 4.181 16 C -0.085 4.085 17 N -0.129 5.129 18 H 0.253 0.747 19 C -0.182 4.182 20 C 0.386 3.614 21 O -0.398 6.398 22 O -0.286 6.286 23 C -0.054 4.054 24 C -0.104 4.104 25 H 0.094 0.906 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.188 0.812 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.096 -10.764 6.671 13.651 hybrid contribution -0.372 -0.781 -0.825 1.195 sum 4.725 -11.545 5.846 13.776 Atomic orbital electron populations 1.22616 0.83018 1.01539 0.99179 1.87891 1.17975 1.28929 1.95233 1.23421 0.97556 0.83789 0.98905 1.21070 0.89474 0.97043 0.89449 1.44098 1.75709 1.00908 1.10196 1.20029 1.41037 0.99207 0.86911 0.92018 1.26116 0.98113 0.92611 1.03883 1.70890 1.40077 1.32105 1.12082 0.84062 0.76872 0.75385 0.76536 1.19912 1.23221 1.22270 1.19352 0.87551 0.84939 0.99371 1.20808 1.00193 1.05670 0.91421 1.21923 0.84782 1.02870 0.98893 1.41753 1.11803 1.53773 1.05604 0.74679 1.19092 0.94693 1.22199 0.82211 1.19940 0.80403 0.73549 0.87549 1.90868 1.79581 1.50239 1.19077 1.86563 1.21459 1.80376 1.40222 1.23204 0.91470 1.01261 0.89488 1.21242 0.90669 0.99653 0.98803 0.90605 0.95115 0.94681 0.95083 0.92797 0.93198 0.92632 0.92545 0.92144 0.93318 0.81236 0.91870 0.91937 0.88296 0.84013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.38 -7.12 9.62 -35.23 -0.34 -7.46 16 3 C 0.04 0.83 6.28 37.15 0.23 1.06 16 4 C 0.16 3.42 4.53 -4.04 -0.02 3.40 16 5 N -0.59 -13.71 2.10 -174.61 -0.37 -14.07 16 6 C -0.34 -9.18 9.76 -15.06 -0.15 -9.33 16 7 H 0.06 1.77 8.06 -52.48 -0.42 1.35 16 8 C 0.00 -0.12 5.24 -17.43 -0.09 -0.22 16 9 N -0.91 -27.62 13.71 55.49 0.76 -26.86 16 10 Si 1.04 26.35 25.56 -169.99 -4.35 22.00 16 11 H -0.27 -6.67 6.39 56.52 0.36 -6.31 16 12 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 14 C 0.21 4.32 5.93 -5.20 -0.03 4.29 16 15 C -0.17 -3.26 5.65 -105.02 -0.59 -3.85 16 16 C 0.05 0.88 11.78 -17.16 -0.20 0.68 16 17 N -0.53 -7.97 6.07 -9.53 -0.06 -8.03 16 18 H 0.42 4.81 8.96 -40.82 -0.37 4.45 16 19 C -0.07 -1.25 7.10 -82.00 -0.58 -1.83 16 20 C 0.54 8.94 7.93 34.06 0.27 9.21 16 21 O -0.51 -9.50 16.68 -19.36 -0.32 -9.82 16 22 O -0.37 -5.02 10.58 -41.00 -0.43 -5.45 16 23 C 0.04 0.39 10.57 101.05 1.07 1.46 16 24 C -0.08 -1.41 10.60 -39.09 -0.41 -1.83 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 31 H 0.06 1.30 3.38 -51.93 -0.18 1.12 16 32 H 0.26 7.92 8.73 -40.82 -0.36 7.56 16 33 H 0.06 1.17 7.22 -51.93 -0.38 0.80 16 34 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.17 2.49 8.06 -52.49 -0.42 2.06 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.14 2.60 8.06 -52.48 -0.42 2.17 16 LS Contribution 335.06 15.07 5.05 5.05 Total: -1.00 -32.94 335.06 -5.05 -37.99 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.60 Total: 2.00 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 0.60 Total: 4.64 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.34 Total: -48.96 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -1.10 Total: -22.73 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -4.35 Total: 22.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.94 -5.05 -37.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.980 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds