Wall clock time and date at job start Tue Mar 31 2020 03:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00098 * 2 1 4 4 C 1.52994 * 109.47070 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47081 * 65.00102 * 4 3 2 6 6 C 1.36938 * 119.99773 * 89.99770 * 5 4 3 7 7 H 1.08005 * 119.99928 * 212.66601 * 6 5 4 8 8 C 1.38806 * 120.00406 * 32.95080 * 6 5 4 9 9 N 1.31616 * 120.00122 * 207.31121 * 8 6 5 10 10 Si 1.86799 * 119.99952 * 27.30342 * 8 6 5 11 11 H 1.48503 * 109.47380 * 0.70060 * 10 8 6 12 12 H 1.48500 * 109.47325 * 120.70448 * 10 8 6 13 13 H 1.48501 * 109.47288 * 240.70081 * 10 8 6 14 14 C 1.46498 * 119.99736 * 269.99613 * 5 4 3 15 15 C 1.50697 * 109.47180 * 264.79869 * 14 5 4 16 16 C 1.35489 * 126.08344 * 266.31918 * 15 14 5 17 17 N 1.34953 * 108.98769 * 179.83137 * 16 15 14 18 18 H 0.96999 * 125.63572 * 180.15437 * 17 16 15 19 19 C 1.37696 * 108.73013 * 0.43328 * 17 16 15 20 20 C 1.46495 * 126.26297 * 179.73286 * 19 17 16 21 21 O 1.21619 * 119.99696 * 180.02562 * 20 19 17 22 22 O 1.34885 * 120.00028 * 0.02562 * 20 19 17 23 23 C 1.45201 * 116.99892 * 179.97438 * 22 20 19 24 24 C 1.37994 * 107.47322 * 359.73655 * 19 17 16 25 25 H 1.09001 * 109.46972 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47681 * 299.99964 * 1 2 3 27 27 H 1.08996 * 109.46894 * 60.00499 * 1 2 3 28 28 H 1.09004 * 109.47094 * 59.99246 * 3 2 1 29 29 H 1.09000 * 109.46575 * 299.99658 * 3 2 1 30 30 H 1.08995 * 109.47641 * 305.00025 * 4 3 2 31 31 H 1.09004 * 109.46834 * 184.99768 * 4 3 2 32 32 H 0.96999 * 120.00202 * 359.97438 * 9 8 6 33 33 H 1.09000 * 109.47110 * 24.80272 * 14 5 4 34 34 H 1.09003 * 109.46631 * 144.80190 * 14 5 4 35 35 H 1.08002 * 125.50330 * 359.97438 * 16 15 14 36 36 H 1.09001 * 109.47681 * 300.00173 * 23 22 20 37 37 H 1.08994 * 109.47315 * 60.00256 * 23 22 20 38 38 H 1.09001 * 109.47203 * 180.02562 * 23 22 20 39 39 H 1.08003 * 126.51627 * 179.97438 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2679 1.3452 -2.3371 7 1 4.0798 0.9754 -3.3343 8 6 4.8103 2.6102 -2.1569 9 7 4.6064 3.5481 -3.0575 10 14 5.8295 2.9813 -0.6361 11 1 5.9230 1.7623 0.2068 12 1 7.1923 3.4062 -1.0451 13 1 5.1833 4.0707 0.1391 14 6 4.1062 -0.8926 -1.3402 15 6 5.5343 -1.2876 -1.0654 16 6 6.5022 -1.4787 -1.9941 17 7 7.6488 -1.8198 -1.3695 18 1 8.4946 -2.0096 -1.8047 19 6 7.4181 -1.8599 -0.0126 20 6 8.3984 -2.1940 1.0236 21 8 8.0692 -2.1950 2.1944 22 8 9.6659 -2.5005 0.6790 23 6 10.5832 -2.8207 1.7581 24 6 6.0945 -1.5279 0.1927 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.6885 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8426 31 1 3.9784 2.1765 0.0902 32 1 4.0774 3.3553 -3.8473 33 1 3.4517 -1.3614 -0.6054 34 1 3.8242 -1.2217 -2.3404 35 1 6.3769 -1.3728 -3.0616 36 1 10.6612 -1.9688 2.4336 37 1 10.2114 -3.6862 2.3063 38 1 11.5660 -3.0470 1.3445 39 1 5.5876 -1.4659 1.1443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453599070.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:35 Heat of formation + Delta-G solvation = -79.076147 kcal Electronic energy + Delta-G solvation = -22564.638996 eV Core-core repulsion = 19087.709692 eV Total energy + Delta-G solvation = -3476.929303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -42.32796 -40.89566 -38.99052 -37.50485 -37.21801 -33.96662 -32.63127 -31.07821 -30.22749 -28.56466 -27.26048 -26.87273 -24.59086 -24.03457 -22.72785 -21.23981 -20.61819 -19.51422 -19.08566 -18.10061 -17.46654 -17.42792 -16.91122 -16.58773 -16.22215 -15.98169 -15.68672 -15.13503 -14.92374 -14.69314 -14.55213 -14.42220 -14.05017 -13.58599 -13.39329 -13.21673 -13.06031 -12.89185 -12.65351 -12.35170 -12.10182 -11.87292 -11.85220 -11.71094 -11.52697 -11.25035 -10.55022 -10.41199 -9.79233 -9.20904 -8.90097 -8.37315 -5.40144 0.20594 1.44867 1.54736 1.60990 1.74166 1.76309 2.13795 2.30482 2.56382 3.04095 3.15144 3.68587 3.92366 4.25931 4.28330 4.31457 4.32677 4.38181 4.46271 4.49542 4.55935 4.63684 4.65826 4.67100 4.79287 4.83818 4.90066 5.05641 5.13157 5.20490 5.25401 5.37412 5.83560 5.96670 6.02442 6.39268 6.43072 6.57780 6.67853 7.03416 7.73325 8.26262 8.94020 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015932 B = 0.005578 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.026049 B = 5018.474121 C = 5785.216351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.052 3.948 4 C 0.149 3.851 5 N -0.599 5.599 6 C -0.313 4.313 7 H 0.035 0.965 8 C -0.051 4.051 9 N -0.952 5.952 10 Si 1.079 2.921 11 H -0.260 1.260 12 H -0.313 1.313 13 H -0.289 1.289 14 C 0.221 3.779 15 C -0.197 4.197 16 C 0.061 3.939 17 N -0.514 5.514 18 H 0.434 0.566 19 C -0.077 4.077 20 C 0.542 3.458 21 O -0.535 6.535 22 O -0.364 6.364 23 C 0.030 3.970 24 C -0.094 4.094 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.027 0.973 30 H 0.064 0.936 31 H 0.041 0.959 32 H 0.252 0.748 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.189 0.811 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.137 0.863 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.949 -13.209 6.721 15.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.027 4.027 4 C 0.023 3.977 5 N -0.321 5.321 6 C -0.444 4.444 7 H 0.053 0.947 8 C -0.248 4.248 9 N -0.594 5.594 10 Si 0.908 3.092 11 H -0.185 1.185 12 H -0.242 1.242 13 H -0.217 1.217 14 C 0.095 3.905 15 C -0.205 4.205 16 C -0.078 4.078 17 N -0.110 5.110 18 H 0.275 0.725 19 C -0.187 4.187 20 C 0.390 3.610 21 O -0.426 6.426 22 O -0.281 6.281 23 C -0.062 4.062 24 C -0.122 4.122 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.206 0.794 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.027 -12.287 7.816 15.760 hybrid contribution -0.676 -0.506 -1.180 1.451 sum 5.351 -12.792 6.636 15.372 Atomic orbital electron populations 1.22851 0.80641 1.03391 0.99970 1.87843 1.20506 1.28070 1.95369 1.23129 0.96154 0.84465 0.98911 1.21142 0.91022 0.96367 0.89173 1.44175 1.76171 1.02000 1.09742 1.19852 1.38438 0.99089 0.86989 0.94709 1.26883 0.99350 0.93081 1.05474 1.70980 1.42384 1.33161 1.12862 0.83514 0.75183 0.75896 0.74593 1.18460 1.24197 1.21655 1.19271 0.88890 0.82892 0.99460 1.20610 0.99794 1.07785 0.92305 1.22146 0.84676 1.01480 0.99495 1.41688 1.12214 1.52264 1.04853 0.72537 1.19166 0.94575 1.21806 0.83166 1.19843 0.81255 0.73068 0.86833 1.90855 1.80257 1.51444 1.20010 1.86547 1.20424 1.79675 1.41482 1.23599 0.92155 1.01335 0.89141 1.21287 0.91604 1.00694 0.98637 0.88295 0.93165 0.94995 0.92341 0.95496 0.91748 0.94117 0.93857 0.91499 0.93522 0.79393 0.92076 0.91538 0.84499 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -14.23 9.62 -148.98 -1.43 -15.67 16 3 C 0.05 2.01 6.28 71.98 0.45 2.46 16 4 C 0.15 6.36 4.53 86.38 0.39 6.75 16 5 N -0.60 -27.63 2.10 -706.36 -1.49 -29.11 16 6 C -0.31 -16.94 9.76 84.03 0.82 -16.12 16 7 H 0.04 2.05 8.06 -2.91 -0.02 2.03 16 8 C -0.05 -2.91 5.24 84.86 0.44 -2.47 16 9 N -0.95 -58.92 13.71 21.65 0.30 -58.62 16 10 Si 1.08 53.60 25.56 68.60 1.75 55.35 16 11 H -0.26 -12.18 6.39 99.48 0.64 -11.55 16 12 H -0.31 -15.84 7.11 99.48 0.71 -15.14 16 13 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 14 C 0.22 8.70 5.93 85.63 0.51 9.21 16 15 C -0.20 -7.18 5.65 -20.12 -0.11 -7.29 16 16 C 0.06 1.91 11.78 83.58 0.98 2.90 16 17 N -0.51 -14.09 6.07 -184.05 -1.12 -15.21 16 18 H 0.43 8.73 8.96 -92.71 -0.83 7.90 16 19 C -0.08 -2.50 7.10 40.32 0.29 -2.21 16 20 C 0.54 17.00 7.93 69.97 0.55 17.56 16 21 O -0.53 -19.29 16.68 19.45 0.32 -18.96 16 22 O -0.36 -8.96 10.58 -58.00 -0.61 -9.57 16 23 C 0.03 0.52 10.57 113.37 1.20 1.71 16 24 C -0.09 -3.41 10.60 22.59 0.24 -3.17 16 25 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 2.55 8.07 -2.39 -0.02 2.53 16 31 H 0.04 1.87 3.38 -2.38 -0.01 1.86 16 32 H 0.25 15.65 8.73 -92.71 -0.81 14.84 16 33 H 0.07 2.53 7.22 -2.39 -0.02 2.51 16 34 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 35 H 0.19 5.10 8.06 -2.91 -0.02 5.08 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.14 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.14 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -71.21 335.06 4.86 -66.35 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.12 Total: 14.12 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 7.01 Total: 11.32 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -2.31 Total: -102.94 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.72 Total: -44.20 kcal Atomic # 14 Polarization: 53.60 SS G_CDS: 1.75 Total: 55.35 kcal Total: -71.21 4.86 -66.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599070.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.723 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds