Wall clock time and date at job start Tue Mar 31 2020 03:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47195 * 2 1 4 4 C 1.46503 * 119.99848 * 267.12889 * 3 2 1 5 5 C 1.50707 * 109.46569 * 265.57979 * 4 3 2 6 6 H 1.07998 * 119.99954 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99848 * 180.02562 * 5 4 3 8 8 N 1.31507 * 120.00118 * 179.97438 * 7 5 4 9 9 Si 1.86809 * 119.99918 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46905 * 89.99864 * 9 7 5 11 11 H 1.48500 * 109.46867 * 210.00064 * 9 7 5 12 12 H 1.48499 * 109.46969 * 330.00064 * 9 7 5 13 13 C 1.34772 * 119.99951 * 87.12111 * 3 2 1 14 14 O 1.21279 * 120.00219 * 3.28413 * 13 3 2 15 15 C 1.50700 * 119.99835 * 183.27610 * 13 3 2 16 16 H 1.08991 * 109.47628 * 317.26865 * 15 13 3 17 17 C 1.52997 * 109.47046 * 77.26990 * 15 13 3 18 18 N 1.46504 * 109.46941 * 197.26695 * 15 13 3 19 19 C 1.33879 * 122.75982 * 120.00810 * 18 15 13 20 20 O 1.21217 * 125.39711 * 359.97065 * 19 18 15 21 21 C 1.51316 * 109.20260 * 179.97438 * 19 18 15 22 22 C 1.54226 * 103.69555 * 359.91657 * 21 19 18 23 23 C 1.33879 * 122.76125 * 299.99903 * 18 15 13 24 24 O 1.21220 * 125.39984 * 0.02562 * 23 18 15 25 25 H 1.08999 * 109.47197 * 300.00482 * 1 2 3 26 26 H 1.09004 * 109.47228 * 59.99699 * 1 2 3 27 27 H 1.08999 * 109.47336 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46923 * 240.00234 * 2 1 3 29 29 H 1.08998 * 109.46997 * 119.99938 * 2 1 3 30 30 H 1.08995 * 109.47545 * 25.57417 * 4 3 2 31 31 H 1.08995 * 109.47333 * 145.58644 * 4 3 2 32 32 H 0.97002 * 120.00299 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47797 * 173.20241 * 17 15 13 34 34 H 1.09001 * 109.47233 * 293.20738 * 17 15 13 35 35 H 1.09006 * 109.46982 * 53.20578 * 17 15 13 36 36 H 1.08999 * 110.60486 * 118.51586 * 21 19 18 37 37 H 1.08994 * 110.60589 * 241.32078 * 21 19 18 38 38 H 1.09010 * 110.60434 * 118.59885 * 22 21 19 39 39 H 1.09000 * 110.60853 * 241.55835 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3224 2.0506 -1.2672 5 6 3.7897 1.8988 -1.5759 6 1 4.4315 1.3581 -0.8960 7 6 4.3129 2.4510 -2.7259 8 7 5.5934 2.3189 -2.9951 9 14 3.2030 3.3867 -3.9015 10 1 3.1768 4.8218 -3.5209 11 1 3.7221 3.2510 -5.2861 12 1 1.8276 2.8309 -3.8318 13 6 2.1877 2.0361 1.1657 14 8 1.9930 1.4633 2.2168 15 6 2.6192 3.4800 1.1630 16 1 3.4064 3.6226 0.4228 17 6 1.4238 4.3688 0.8139 18 7 3.1251 3.8409 2.4897 19 6 4.3752 4.2739 2.6952 20 8 5.2189 4.4165 1.8366 21 6 4.5679 4.5567 4.1691 22 6 3.1987 4.2115 4.7893 23 6 2.3753 3.7652 3.5962 24 8 1.2203 3.3995 3.6382 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7345 1.5998 -2.0666 31 1 2.0757 3.1093 -1.1872 32 1 5.9616 2.7077 -3.8039 33 1 1.7034 5.4159 0.9293 34 1 1.1230 4.1846 -0.2175 35 1 0.5930 4.1390 1.4811 36 1 5.3486 3.9186 4.5833 37 1 4.8078 5.6077 4.3298 38 1 3.2982 3.4016 5.5121 39 1 2.7562 5.0914 5.2562 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534276105.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:21 Heat of formation + Delta-G solvation = -116.336174 kcal Electronic energy + Delta-G solvation = -23751.771367 eV Core-core repulsion = 20273.226348 eV Total energy + Delta-G solvation = -3478.545019 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = -0.10 seconds Orbital eigenvalues (eV) -43.02505 -40.76232 -39.52801 -37.10630 -36.85517 -35.37215 -34.69765 -32.45860 -31.01210 -29.51920 -27.02124 -26.08186 -24.60099 -24.01309 -23.22830 -21.10323 -19.66426 -19.16255 -18.38111 -18.32911 -17.68201 -17.15283 -16.81652 -16.37779 -16.02574 -15.58053 -15.20296 -15.09617 -14.83583 -14.76591 -14.69385 -14.30166 -14.23541 -13.86553 -13.55982 -13.36449 -13.18224 -13.13728 -12.90820 -12.66754 -12.45950 -12.08905 -12.06700 -11.92491 -11.73256 -11.50182 -11.36571 -10.92318 -10.82985 -10.46351 -9.55950 -8.33843 -6.43372 0.61130 1.30021 1.36979 1.38560 1.48478 1.62801 1.81412 2.23592 2.31030 2.99245 3.22030 3.31036 3.46254 3.69112 3.83372 4.00555 4.09345 4.20976 4.25966 4.31347 4.44293 4.52387 4.56652 4.66351 4.74026 4.78838 4.84806 4.91890 4.93374 4.96092 4.99832 5.24511 5.38112 5.61047 5.91852 6.10107 6.43720 6.46743 6.61761 6.82393 7.10598 7.24038 8.83061 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.007363 C = 0.005807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.706877 B = 3801.976493 C = 4820.541583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.108 3.892 3 N -0.593 5.593 4 C 0.212 3.788 5 C -0.548 4.548 6 H 0.020 0.980 7 C 0.018 3.982 8 N -0.941 5.941 9 Si 0.941 3.059 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.231 1.231 13 C 0.509 3.491 14 O -0.570 6.570 15 C 0.100 3.900 16 H 0.111 0.889 17 C -0.148 4.148 18 N -0.570 5.570 19 C 0.508 3.492 20 O -0.528 6.528 21 C -0.134 4.134 22 C -0.134 4.134 23 C 0.515 3.485 24 O -0.502 6.502 25 H 0.040 0.960 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.269 0.731 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.140 0.860 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.423 6.578 12.235 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 N -0.323 5.323 4 C 0.090 3.910 5 C -0.586 4.586 6 H 0.039 0.961 7 C -0.181 4.181 8 N -0.579 5.579 9 Si 0.762 3.238 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.153 1.153 13 C 0.296 3.704 14 O -0.450 6.450 15 C -0.006 4.006 16 H 0.129 0.871 17 C -0.205 4.205 18 N -0.313 5.313 19 C 0.299 3.701 20 O -0.402 6.402 21 C -0.173 4.173 22 C -0.173 4.173 23 C 0.307 3.693 24 O -0.374 6.374 25 H 0.059 0.941 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.158 0.842 37 H 0.175 0.825 38 H 0.156 0.844 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.586 6.160 12.190 16.133 hybrid contribution 0.423 -0.157 -1.216 1.297 sum -8.163 6.004 10.974 14.937 Atomic orbital electron populations 1.22007 0.93832 1.03301 1.01643 1.21480 0.95661 0.81853 1.02394 1.47964 1.63380 1.14412 1.06562 1.19823 0.94681 0.94176 0.82289 1.21467 0.93734 1.36188 1.07257 0.96136 1.25879 0.96407 0.96427 0.99383 1.70065 1.14624 1.46122 1.27129 0.85822 0.80469 0.79764 0.77748 1.18479 1.20744 1.15331 1.20645 0.76954 0.89057 0.83741 1.90604 1.53346 1.69426 1.31622 1.21226 1.00638 0.92969 0.85753 0.87065 1.22048 0.95509 0.99411 1.03578 1.46914 1.15592 1.59378 1.09431 1.22101 0.79618 0.73796 0.94547 1.90830 1.45941 1.50811 1.52660 1.22591 0.99879 1.08642 0.86223 1.22645 0.92805 1.07027 0.94861 1.21849 0.86651 0.74839 0.86001 1.90696 1.17540 1.43319 1.85829 0.94096 0.91689 0.89284 0.89809 0.92246 0.92552 0.93461 0.92170 0.89313 0.89310 0.91107 0.84238 0.82525 0.84442 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 10.22 71.98 0.74 -3.70 16 2 C 0.11 4.03 6.10 86.38 0.53 4.55 16 3 N -0.59 -25.43 2.47 -826.15 -2.04 -27.47 16 4 C 0.21 9.40 3.86 85.63 0.33 9.73 16 5 C -0.55 -30.60 9.21 25.60 0.24 -30.36 16 6 H 0.02 1.34 8.06 -2.91 -0.02 1.31 16 7 C 0.02 1.03 5.47 84.66 0.46 1.49 16 8 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16 9 Si 0.94 40.38 27.47 68.60 1.88 42.26 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 11 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.23 -8.63 6.54 99.48 0.65 -7.98 16 13 C 0.51 22.53 6.74 87.66 0.59 23.12 16 14 O -0.57 -27.03 13.67 17.60 0.24 -26.79 16 15 C 0.10 4.01 2.27 44.24 0.10 4.11 16 16 H 0.11 5.21 5.98 -2.39 -0.01 5.19 16 17 C -0.15 -4.76 8.84 71.98 0.64 -4.12 16 18 N -0.57 -19.61 2.39 -737.69 -1.76 -21.38 16 19 C 0.51 16.18 8.08 87.99 0.71 16.89 16 20 O -0.53 -22.44 17.23 -2.83 -0.05 -22.49 16 21 C -0.13 -2.09 7.02 30.46 0.21 -1.88 16 22 C -0.13 -2.00 7.05 30.57 0.22 -1.79 16 23 C 0.52 15.44 6.75 88.11 0.59 16.03 16 24 O -0.50 -18.60 14.67 17.78 0.26 -18.34 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.08 3.01 8.05 -2.39 -0.02 2.99 16 29 H 0.06 2.33 7.47 -2.39 -0.02 2.32 16 30 H 0.06 2.32 7.10 -2.39 -0.02 2.30 16 31 H 0.05 1.96 4.19 -2.39 -0.01 1.95 16 32 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.09 2.71 6.12 -2.39 -0.01 2.69 16 35 H 0.07 2.33 6.87 -2.38 -0.02 2.31 16 36 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.14 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -83.31 321.50 5.19 -78.12 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 1.01 Total: 19.67 kcal Atomic # 6 Polarization: 28.73 SS G_CDS: 5.35 Total: 34.08 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.51 Total: -106.52 kcal Atomic # 8 Polarization: -68.07 SS G_CDS: 0.45 Total: -67.61 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.88 Total: 42.26 kcal Total: -83.31 5.19 -78.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534276105.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.220 kcal (2) G-P(sol) polarization free energy of solvation -83.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds