Wall clock time and date at job start Tue Mar 31 2020 03:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46764 * 124.35068 * 2 1 4 4 C 1.54484 * 105.47081 * 163.01042 * 3 2 1 5 5 H 1.09001 * 110.96584 * 143.57676 * 4 3 2 6 6 C 1.50705 * 110.96703 * 267.29570 * 4 3 2 7 7 O 1.21276 * 120.00034 * 356.91886 * 6 4 3 8 8 N 1.34775 * 119.99931 * 176.90961 * 6 4 3 9 9 C 1.47426 * 125.64777 * 359.97438 * 8 6 4 10 10 C 1.54910 * 104.83209 * 155.89013 * 9 8 6 11 11 C 1.55154 * 101.58031 * 37.01037 * 10 9 8 12 12 O 1.42902 * 110.72177 * 82.86185 * 11 10 9 13 13 C 1.50699 * 110.87083 * 206.06581 * 11 10 9 14 14 H 1.07999 * 120.00335 * 113.61382 * 13 11 10 15 15 C 1.37884 * 119.99794 * 293.60987 * 13 11 10 16 16 N 1.31510 * 119.99771 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99920 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47095 * 60.00024 * 17 15 13 19 19 H 1.48496 * 109.47231 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47332 * 300.00130 * 17 15 13 21 21 C 1.47019 * 125.65013 * 179.97438 * 8 6 4 22 22 C 1.54625 * 101.79994 * 25.43426 * 4 3 2 23 23 C 1.34419 * 124.34793 * 180.02562 * 2 1 3 24 24 O 1.21279 * 124.93951 * 0.40699 * 23 2 1 25 25 H 1.08999 * 109.47348 * 89.99130 * 1 2 3 26 26 H 1.08993 * 109.47277 * 209.99860 * 1 2 3 27 27 H 1.09003 * 109.46551 * 329.99825 * 1 2 3 28 28 H 1.09003 * 110.24547 * 44.01069 * 3 2 1 29 29 H 1.08997 * 110.24446 * 282.00947 * 3 2 1 30 30 H 1.08998 * 110.36718 * 274.72906 * 9 8 6 31 31 H 1.09005 * 110.36600 * 37.05467 * 9 8 6 32 32 H 1.09002 * 111.00097 * 155.08840 * 10 9 8 33 33 H 1.08999 * 111.00452 * 278.93764 * 10 9 8 34 34 H 0.96701 * 113.99539 * 66.47454 * 12 11 10 35 35 H 0.97003 * 119.99861 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.88389 * 300.46361 * 21 8 6 37 37 H 1.09003 * 109.87977 * 61.62701 * 21 8 6 38 38 H 1.09004 * 110.48366 * 93.86141 * 22 4 3 39 39 H 1.08996 * 110.48909 * 216.50207 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7485 0.4350 5 1 4.4754 1.3014 -0.0969 6 6 3.8758 0.8809 1.9261 7 8 2.9883 1.3588 2.6004 8 7 5.0181 0.4681 2.5101 9 6 6.1721 -0.1291 1.8136 10 6 7.3819 0.1489 2.7404 11 6 6.7441 -0.0215 4.1445 12 8 6.6987 -1.4008 4.5153 13 6 7.4943 0.7814 5.1759 14 1 7.0161 1.6201 5.6599 15 6 8.7912 0.4451 5.5017 16 7 9.3733 -0.5766 4.9128 17 14 9.7208 1.4398 6.7806 18 1 8.9980 1.3788 8.0765 19 1 11.0852 0.8783 6.9486 20 1 9.8180 2.8527 6.3341 21 6 5.3197 0.5386 3.9473 22 6 3.6908 -0.7379 0.0090 23 6 2.2234 -1.1098 -0.0005 24 8 1.7945 -2.2442 -0.0081 25 1 -0.3634 0.0002 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5139 28 1 1.8987 1.9381 0.7106 29 1 2.3303 1.6431 -1.0003 30 1 6.0271 -1.2024 1.6907 31 1 6.3189 0.3483 0.8447 32 1 8.1736 -0.5829 2.5794 33 1 7.7555 1.1634 2.6015 34 1 7.5687 -1.8004 4.6513 35 1 10.2858 -0.8130 5.1417 36 1 5.2784 1.5743 4.2844 37 1 4.6039 -0.0642 4.5063 38 1 4.1201 -0.8524 -0.9864 39 1 4.2344 -1.3459 0.7321 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592839342.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:34 Heat of formation + Delta-G solvation = -134.978767 kcal Electronic energy + Delta-G solvation = -23070.262486 eV Core-core repulsion = 19590.909064 eV Total energy + Delta-G solvation = -3479.353423 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99829 -40.53221 -38.99914 -37.28898 -36.17420 -34.14956 -33.98374 -31.40928 -30.09069 -28.76118 -27.96484 -26.86017 -24.68911 -23.10477 -21.55464 -20.68532 -20.18041 -19.23877 -18.44918 -17.77827 -17.13474 -17.01738 -16.86019 -16.33270 -16.17657 -15.87357 -15.27762 -14.86692 -14.61592 -14.53837 -14.13798 -13.87237 -13.53021 -13.38662 -13.30046 -13.23778 -13.19736 -13.12938 -12.79784 -12.57538 -12.44266 -12.38732 -12.28203 -11.95526 -11.28161 -11.00377 -10.87915 -10.61557 -10.13476 -9.75805 -9.64098 -8.25452 -6.39599 1.43096 1.45584 1.45728 1.52098 1.54363 1.96066 2.09020 2.39839 3.00170 3.23268 3.33277 3.45293 3.80693 3.91234 4.02158 4.22814 4.32320 4.32993 4.46245 4.50179 4.57757 4.62087 4.66187 4.70784 4.80840 4.82310 4.87591 4.93448 5.19269 5.24662 5.47031 5.48948 5.55352 5.77209 6.03422 6.06300 6.57529 6.65334 7.05486 7.08682 7.31469 7.44985 8.80662 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.036777 B = 0.004138 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.164446 B = 6765.193773 C = 7020.356553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.622 5.622 3 C 0.117 3.883 4 C -0.109 4.109 5 H 0.173 0.827 6 C 0.520 3.480 7 O -0.587 6.587 8 N -0.608 5.608 9 C 0.102 3.898 10 C -0.129 4.129 11 C 0.233 3.767 12 O -0.598 6.598 13 C -0.565 4.565 14 H 0.052 0.948 15 C 0.039 3.961 16 N -0.907 5.907 17 Si 0.958 3.042 18 H -0.280 1.280 19 H -0.278 1.278 20 H -0.270 1.270 21 C 0.128 3.872 22 C -0.140 4.140 23 C 0.501 3.499 24 O -0.585 6.585 25 H 0.078 0.922 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.383 0.617 35 H 0.273 0.727 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.160 0.840 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.856 4.933 -14.665 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.354 5.354 3 C -0.005 4.005 4 C -0.130 4.130 5 H 0.190 0.810 6 C 0.310 3.690 7 O -0.468 6.468 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.167 4.167 11 C 0.193 3.807 12 O -0.408 6.408 13 C -0.603 4.603 14 H 0.070 0.930 15 C -0.163 4.163 16 N -0.547 5.547 17 Si 0.784 3.216 18 H -0.206 1.206 19 H -0.203 1.203 20 H -0.196 1.196 21 C 0.005 3.995 22 C -0.180 4.180 23 C 0.290 3.710 24 O -0.467 6.467 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.146 0.854 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.178 0.822 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.181 4.643 -14.409 17.207 hybrid contribution 1.055 0.104 1.529 1.860 sum -7.127 4.747 -12.880 15.466 Atomic orbital electron populations 1.21674 0.77130 1.03139 1.02983 1.48343 1.07583 1.07577 1.71940 1.22278 0.87352 0.86608 1.04253 1.22396 1.01723 0.98401 0.90466 0.80952 1.20838 0.79846 0.76932 0.91391 1.90650 1.41932 1.47611 1.66645 1.48664 1.16598 1.60186 1.08508 1.22635 0.84029 0.98269 0.96965 1.23104 0.96506 1.01580 0.95545 1.19626 0.88961 0.79862 0.92252 1.86096 1.36094 1.26575 1.92052 1.21742 0.98921 1.15207 1.24438 0.92967 1.25568 0.97573 0.95867 0.97254 1.69614 1.14686 1.27591 1.42766 0.85606 0.77560 0.79151 0.79266 1.20607 1.20290 1.19550 1.21786 0.96825 0.99420 0.81467 1.22483 0.93235 0.94983 1.07277 1.21473 0.90853 0.84144 0.74559 1.90681 1.79714 1.23076 1.53184 0.90312 0.92908 0.89250 0.89590 0.85401 0.91288 0.86629 0.90600 0.91727 0.76604 0.91735 0.91993 0.94765 0.82235 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 10.96 127.77 1.40 3.17 16 2 N -0.62 -14.32 3.33 -842.76 -2.81 -17.13 16 3 C 0.12 2.01 6.70 86.83 0.58 2.59 16 4 C -0.11 -2.08 2.78 -10.48 -0.03 -2.11 16 5 H 0.17 1.72 7.86 -2.39 -0.02 1.70 16 6 C 0.52 16.79 7.18 87.66 0.63 17.42 16 7 O -0.59 -23.58 15.84 -3.02 -0.05 -23.62 16 8 N -0.61 -21.64 3.29 -811.79 -2.67 -24.31 16 9 C 0.10 3.09 5.57 86.86 0.48 3.57 16 10 C -0.13 -5.07 5.68 31.99 0.18 -4.89 16 11 C 0.23 11.04 0.86 -10.35 -0.01 11.03 16 12 O -0.60 -30.42 13.09 -148.98 -1.95 -32.37 16 13 C -0.56 -29.28 8.22 25.60 0.21 -29.07 16 14 H 0.05 2.75 7.53 -2.91 -0.02 2.72 16 15 C 0.04 1.94 5.28 84.66 0.45 2.38 16 16 N -0.91 -45.28 10.71 21.45 0.23 -45.05 16 17 Si 0.96 40.47 29.54 68.60 2.03 42.49 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 21 C 0.13 5.74 6.22 86.73 0.54 6.28 16 22 C -0.14 -2.85 5.98 30.62 0.18 -2.67 16 23 C 0.50 14.24 8.02 87.93 0.71 14.95 16 24 O -0.59 -21.98 17.60 -3.03 -0.05 -22.03 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.05 1.23 7.93 -2.39 -0.02 1.21 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.76 6.98 -2.39 -0.02 1.75 16 29 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 2.08 7.25 -2.39 -0.02 2.06 16 31 H 0.12 2.32 7.49 -2.38 -0.02 2.30 16 32 H 0.08 3.14 7.78 -2.39 -0.02 3.13 16 33 H 0.06 2.56 8.04 -2.39 -0.02 2.54 16 34 H 0.38 19.61 6.98 -74.06 -0.52 19.09 16 35 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 36 H 0.06 2.84 7.63 -2.39 -0.02 2.83 16 37 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 38 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 2.33 6.08 -2.39 -0.01 2.31 16 Total: -1.00 -71.47 318.65 0.61 -70.86 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.55 Total: 28.52 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 5.32 Total: 22.65 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -5.25 Total: -86.49 kcal Atomic # 8 Polarization: -75.98 SS G_CDS: -2.05 Total: -78.03 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.49 kcal Total: -71.47 0.61 -70.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592839342.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.120 kcal (2) G-P(sol) polarization free energy of solvation -71.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds