Wall clock time and date at job start Tue Mar 31 2020 02:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46821 * 240.00024 * 3 2 1 5 5 H 1.48498 * 109.46872 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46835 * 120.00488 * 3 2 1 7 7 C 1.38951 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99858 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00349 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00214 * 180.02562 * 9 7 2 11 11 O 1.21291 * 120.00276 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99940 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47480 * 180.02562 * 12 10 9 14 14 C 1.48484 * 110.99522 * 307.59571 * 13 12 10 15 15 C 1.54925 * 103.21596 * 200.14477 * 14 13 12 16 16 C 1.54446 * 102.95328 * 37.68403 * 15 14 13 17 17 C 1.50696 * 112.36722 * 99.37926 * 16 15 14 18 18 O 1.20823 * 120.00569 * 241.85557 * 17 16 15 19 19 O 1.34234 * 119.99651 * 61.86348 * 17 16 15 20 20 C 1.54093 * 109.02413 * 223.73273 * 16 15 14 21 21 C 1.54847 * 104.50826 * 90.09972 * 20 16 15 22 22 C 1.55196 * 102.58283 * 37.76542 * 21 20 16 23 23 C 1.47916 * 111.00252 * 190.00390 * 13 12 10 24 24 H 1.08990 * 111.37092 * 23.77229 * 23 13 12 25 25 H 0.96999 * 120.00168 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99157 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47217 * 59.99603 * 12 10 9 28 28 H 1.09007 * 109.47397 * 300.00072 * 12 10 9 29 29 H 1.08993 * 110.66805 * 318.57929 * 14 13 12 30 30 H 1.09002 * 110.66871 * 81.71575 * 14 13 12 31 31 H 1.09003 * 110.71731 * 279.31612 * 15 14 13 32 32 H 1.09001 * 110.71619 * 156.05087 * 15 14 13 33 33 H 0.96697 * 116.99617 * 179.97438 * 19 17 16 34 34 H 1.09002 * 110.44920 * 208.89486 * 20 16 15 35 35 H 1.08996 * 110.44737 * 331.30943 * 20 16 15 36 36 H 1.09001 * 110.75993 * 156.14570 * 21 20 16 37 37 H 1.08992 * 110.75754 * 279.52690 * 21 20 16 38 38 H 1.08994 * 110.47128 * 202.85478 * 22 21 20 39 39 H 1.09003 * 110.47310 * 80.23360 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2436 -4.8630 0.0000 13 7 2.1982 -5.9796 0.0005 14 6 3.1867 -5.8349 -1.0979 15 6 3.7334 -7.2738 -1.2742 16 6 2.4798 -8.1494 -1.0571 17 6 1.8638 -8.6010 -2.3562 18 8 0.7370 -8.2685 -2.6384 19 8 2.5669 -9.3730 -3.1997 20 6 2.8513 -9.3443 -0.1578 21 6 2.5904 -8.8410 1.2832 22 6 1.3099 -7.9806 1.1142 23 6 1.5089 -7.2663 -0.2388 24 1 0.5653 -7.1197 -0.7640 25 1 -0.4850 0.8400 0.0004 26 1 0.3532 -2.3906 0.0002 27 1 0.6166 -4.9209 -0.8896 28 1 0.6173 -4.9205 0.8903 29 1 2.6996 -5.4938 -2.0113 30 1 3.9860 -5.1525 -0.8088 31 1 4.4918 -7.4929 -0.5225 32 1 4.1326 -7.4142 -2.2787 33 1 2.1295 -9.6378 -4.0204 34 1 2.2169 -10.2017 -0.3824 35 1 3.9018 -9.6050 -0.2857 36 1 2.4101 -9.6778 1.9580 37 1 3.4221 -8.2312 1.6359 38 1 1.2303 -7.2529 1.9218 39 1 0.4249 -8.6161 1.0836 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711655315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:51 Heat of formation + Delta-G solvation = -145.182189 kcal Electronic energy + Delta-G solvation = -22989.759976 eV Core-core repulsion = 19509.964100 eV Total energy + Delta-G solvation = -3479.795876 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.25842 -40.54750 -39.54344 -37.17215 -36.28477 -35.42585 -33.46701 -33.03228 -29.64242 -28.91751 -27.29986 -25.66101 -24.22856 -22.74737 -21.65032 -21.02959 -20.11544 -19.90750 -18.88271 -18.21552 -17.54152 -16.87273 -16.53882 -16.29285 -16.09110 -15.85805 -15.75154 -15.40638 -15.08772 -14.62140 -14.17375 -13.81093 -13.52020 -13.34950 -12.99169 -12.86614 -12.72236 -12.59069 -12.44341 -12.40761 -12.15782 -12.09226 -12.03709 -11.92850 -11.83235 -11.50673 -11.44469 -11.24998 -10.18545 -10.02920 -9.42060 -8.47748 -5.97048 1.07433 1.38988 1.40913 1.52285 1.93819 2.00607 2.28004 2.83220 3.07284 3.18980 3.33835 3.50842 3.72746 4.10825 4.20086 4.21412 4.22769 4.28425 4.36991 4.45713 4.50995 4.55383 4.67543 4.80069 4.87240 4.92963 5.05448 5.11323 5.19365 5.23712 5.31418 5.39929 5.49316 5.51915 5.81379 5.92960 6.07790 6.57685 6.91213 7.10261 7.52137 8.07159 8.69662 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.029734 B = 0.003949 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.456592 B = 7088.067967 C = 7245.625765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.082 0.918 9 N -0.572 5.572 10 C 0.442 3.558 11 O -0.609 6.609 12 C 0.046 3.954 13 N -0.488 5.488 14 C 0.032 3.968 15 C -0.096 4.096 16 C -0.069 4.069 17 C 0.501 3.499 18 O -0.549 6.549 19 O -0.500 6.500 20 C -0.094 4.094 21 C -0.111 4.111 22 C -0.107 4.107 23 C 0.063 3.937 24 H 0.062 0.938 25 H 0.278 0.722 26 H 0.395 0.605 27 H 0.054 0.946 28 H 0.110 0.890 29 H 0.013 0.987 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.428 0.572 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -20.452 -1.717 20.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.819 3.181 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.100 0.900 9 N -0.209 5.209 10 C 0.229 3.771 11 O -0.495 6.495 12 C -0.085 4.085 13 N -0.213 5.213 14 C -0.095 4.095 15 C -0.134 4.134 16 C -0.071 4.071 17 C 0.344 3.656 18 O -0.439 6.439 19 O -0.314 6.314 20 C -0.131 4.131 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.045 4.045 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.228 0.772 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.032 0.968 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.290 0.710 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.751 -20.076 -0.933 20.445 hybrid contribution -1.286 1.207 -1.617 2.393 sum 2.465 -18.869 -2.550 19.200 Atomic orbital electron populations 1.69676 1.06983 1.29420 1.50199 1.26082 0.96523 1.02538 0.96152 0.84959 0.77724 0.76444 0.79022 1.19666 1.19551 1.19501 1.19660 0.92782 0.83805 1.50043 0.89974 1.41929 1.09285 1.04762 1.64947 1.20533 0.88289 0.85736 0.82532 1.90414 1.15187 1.87483 1.56445 1.21986 0.94528 0.89219 1.02792 1.64768 1.12703 1.00102 1.43681 1.23392 0.96825 0.98218 0.91071 1.22655 0.95409 0.91344 1.03949 1.21858 0.96730 0.98804 0.89673 1.23189 0.83158 0.73819 0.85407 1.90705 1.21601 1.55429 1.76192 1.84483 1.49394 1.63116 1.34361 1.22356 1.03424 0.93936 0.93399 1.22481 0.97220 0.99324 0.95833 1.22393 0.99090 0.98443 0.94615 1.23237 0.95436 0.88957 0.96864 0.91960 0.91277 0.77182 0.92803 0.87242 0.96847 0.88954 0.87570 0.89336 0.71039 0.90275 0.88355 0.88866 0.91211 0.91059 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.78 13.05 21.66 0.28 -50.49 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 3 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 8 H 0.08 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.57 -30.32 5.29 -306.99 -1.62 -31.94 16 10 C 0.44 21.70 7.49 87.66 0.66 22.35 16 11 O -0.61 -33.29 13.08 -3.06 -0.04 -33.33 16 12 C 0.05 1.77 5.52 85.56 0.47 2.24 16 13 N -0.49 -16.72 4.78 -858.89 -4.10 -20.83 16 14 C 0.03 1.14 5.29 86.65 0.46 1.60 16 15 C -0.10 -2.36 6.08 31.74 0.19 -2.16 16 16 C -0.07 -1.59 0.84 -51.50 -0.04 -1.63 16 17 C 0.50 11.91 6.95 71.23 0.49 12.40 16 18 O -0.55 -16.91 16.21 21.97 0.36 -16.55 16 19 O -0.50 -8.11 13.34 -51.46 -0.69 -8.80 16 20 C -0.09 -1.52 5.66 31.59 0.18 -1.34 16 21 C -0.11 -1.91 6.91 31.98 0.22 -1.69 16 22 C -0.11 -2.35 6.48 31.78 0.21 -2.15 16 23 C 0.06 1.76 2.86 45.72 0.13 1.89 16 24 H 0.06 1.96 6.22 -2.39 -0.01 1.95 16 25 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 26 H 0.39 20.14 7.90 -92.70 -0.73 19.41 16 27 H 0.05 2.02 7.86 -2.39 -0.02 2.00 16 28 H 0.11 3.75 8.14 -2.38 -0.02 3.74 16 29 H 0.01 0.51 8.02 -2.39 -0.02 0.49 16 30 H 0.09 3.85 5.95 -2.39 -0.01 3.84 16 31 H 0.11 2.31 7.61 -2.39 -0.02 2.29 16 32 H 0.09 1.94 7.84 -2.39 -0.02 1.92 16 33 H 0.43 3.31 9.10 -74.06 -0.67 2.63 16 34 H 0.08 1.12 7.93 -2.39 -0.02 1.10 16 35 H 0.10 1.29 7.71 -2.39 -0.02 1.27 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.72 8.05 -2.39 -0.02 1.70 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -71.21 318.10 0.15 -71.06 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.31 Total: 32.63 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 4.25 Total: 12.89 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -5.44 Total: -103.26 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -0.37 Total: -58.68 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.21 0.15 -71.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711655315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.117 kcal (2) G-P(sol) polarization free energy of solvation -71.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds