Wall clock time and date at job start Tue Mar 31 2020 03:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99905 * 2 1 4 4 O 1.20825 * 120.00335 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00230 * 179.97438 * 3 2 1 6 6 H 1.09004 * 110.88738 * 303.81976 * 5 3 2 7 7 C 1.54863 * 110.99647 * 67.73378 * 5 3 2 8 8 C 1.51277 * 104.20604 * 93.26703 * 7 5 3 9 9 O 1.21286 * 124.94006 * 196.28357 * 8 7 5 10 10 N 1.34418 * 110.11807 * 16.26873 * 8 7 5 11 11 C 1.46503 * 124.34894 * 180.42427 * 10 8 7 12 12 N 1.46495 * 109.47202 * 269.97659 * 11 10 8 13 13 C 1.36943 * 119.99858 * 270.00096 * 12 11 10 14 14 H 1.07995 * 119.99830 * 140.57014 * 13 12 11 15 15 C 1.38813 * 119.99814 * 320.56019 * 13 12 11 16 16 N 1.31615 * 120.00454 * 340.27515 * 15 13 12 17 17 Si 1.86799 * 119.99463 * 160.27034 * 15 13 12 18 18 H 1.48506 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46874 * 120.00531 * 17 15 13 20 20 H 1.48501 * 109.47322 * 240.00336 * 17 15 13 21 21 C 1.46496 * 120.00040 * 90.00498 * 12 11 10 22 22 C 1.53004 * 117.50065 * 183.28452 * 21 12 11 23 23 C 1.53000 * 117.50116 * 114.66185 * 21 12 11 24 24 C 1.46763 * 111.29997 * 0.40521 * 10 8 7 25 25 H 1.08998 * 109.47004 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46811 * 300.00100 * 1 2 3 27 27 H 1.09009 * 109.46775 * 59.99965 * 1 2 3 28 28 H 1.08999 * 110.46418 * 334.59397 * 7 5 3 29 29 H 1.08995 * 110.60762 * 212.01289 * 7 5 3 30 30 H 1.09001 * 109.46921 * 29.98490 * 11 10 8 31 31 H 1.09005 * 109.46861 * 149.97685 * 11 10 8 32 32 H 0.96998 * 119.99717 * 175.00956 * 16 15 13 33 33 H 1.08998 * 115.54954 * 328.99432 * 21 12 11 34 34 H 1.09002 * 117.49562 * 359.97438 * 22 21 12 35 35 H 1.08994 * 117.50189 * 145.01467 * 22 21 12 36 36 H 1.08999 * 117.49780 * 214.98072 * 23 21 12 37 37 H 1.08997 * 117.49898 * 359.97438 * 23 21 12 38 38 H 1.09003 * 110.24167 * 101.98592 * 24 10 8 39 39 H 1.08995 * 110.24649 * 223.89541 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9837 0.7294 0.8469 7 6 4.1496 0.7567 -1.3371 8 6 4.2960 2.0008 -2.1851 9 8 4.4525 2.0073 -3.3878 10 7 4.2272 3.0981 -1.4118 11 6 4.3233 4.4709 -1.9144 12 7 5.7255 4.8949 -1.9115 13 6 6.2537 5.5063 -0.8057 14 1 7.2592 5.2730 -0.4883 15 6 5.4966 6.4260 -0.0931 16 7 4.4578 7.0029 -0.6592 17 14 5.9521 6.8447 1.6694 18 1 7.1519 6.0662 2.0690 19 1 6.2474 8.2964 1.7728 20 1 4.8193 6.5049 2.5676 21 6 6.5628 4.6650 -3.0914 22 6 8.0379 5.0604 -2.9990 23 6 7.0740 5.8943 -3.8454 24 6 4.0429 2.7443 0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.4610 0.0540 -1.8063 29 1 5.1205 0.2882 -1.1763 30 1 3.9327 4.5138 -2.9311 31 1 3.7419 5.1339 -1.2736 32 1 3.8864 7.5900 -0.1398 33 1 6.3141 3.7815 -3.6793 34 1 8.3853 5.4921 -2.0603 35 1 8.7601 4.4369 -3.5259 36 1 7.1620 5.8193 -4.9292 37 1 6.7870 6.8741 -3.4637 38 1 4.9867 2.8348 0.5383 39 1 3.2877 3.3858 0.4547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782265091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:00 Heat of formation + Delta-G solvation = -62.399085 kcal Electronic energy + Delta-G solvation = -23264.738992 eV Core-core repulsion = 19788.532860 eV Total energy + Delta-G solvation = -3476.206132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86666 -39.30116 -36.86987 -36.62051 -35.55651 -33.65610 -31.98084 -29.92526 -28.02250 -27.26278 -25.62143 -23.71359 -22.99320 -21.32913 -20.39022 -19.82688 -18.92004 -17.83657 -16.91583 -16.75551 -16.33075 -15.76039 -15.46508 -14.89005 -14.63729 -14.51233 -13.79324 -13.57936 -13.48460 -13.07526 -12.91267 -12.47752 -12.28563 -12.20801 -11.80355 -11.64992 -11.43161 -11.24780 -10.96050 -10.86739 -10.80321 -10.52280 -10.35482 -10.30045 -9.99932 -9.65727 -9.32150 -9.19803 -8.59411 -8.02670 -6.71814 -5.97109 -3.60145 2.18080 2.60292 3.17522 3.24632 3.35137 3.36776 3.84903 4.34766 4.41241 4.58863 4.73932 4.95903 4.99337 5.04007 5.07382 5.23459 5.29959 5.37255 5.40432 5.68670 5.79806 6.03296 6.09546 6.10881 6.17242 6.28987 6.34673 6.49729 6.53678 6.72179 7.00962 7.09595 7.24948 7.49585 7.69278 7.72825 7.94527 8.38312 8.85726 9.00491 9.60542 10.21208 11.02924 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.006381 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.909292 B = 4387.194674 C = 5497.376991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.467 3.533 4 O -0.490 6.490 5 C -0.100 4.100 6 H 0.130 0.870 7 C -0.145 4.145 8 C 0.506 3.494 9 O -0.548 6.548 10 N -0.601 5.601 11 C 0.363 3.637 12 N -0.542 5.542 13 C -0.265 4.265 14 H 0.066 0.934 15 C 0.019 3.981 16 N -0.883 5.883 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.285 1.285 21 C 0.115 3.885 22 C -0.195 4.195 23 C -0.215 4.215 24 C 0.117 3.883 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.118 0.882 32 H 0.258 0.742 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -12.999 3.439 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.309 3.691 4 O -0.375 6.375 5 C -0.120 4.120 6 H 0.147 0.853 7 C -0.186 4.186 8 C 0.292 3.708 9 O -0.426 6.426 10 N -0.338 5.338 11 C 0.157 3.843 12 N -0.259 5.259 13 C -0.395 4.395 14 H 0.083 0.917 15 C -0.182 4.182 16 N -0.524 5.524 17 Si 0.725 3.275 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.211 1.211 21 C 0.007 3.993 22 C -0.233 4.233 23 C -0.256 4.256 24 C -0.007 4.007 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.262 -12.344 2.833 13.363 hybrid contribution 0.022 0.348 1.074 1.129 sum -4.240 -11.995 3.907 13.309 Atomic orbital electron populations 1.23256 0.76447 1.03491 1.02672 1.86485 1.23332 1.33504 1.84367 1.23510 0.91746 0.81383 0.72507 1.90715 1.66739 1.36172 1.43917 1.22130 0.87673 1.00737 1.01451 0.85264 1.22436 1.03856 0.98648 0.93640 1.20701 0.76457 0.86102 0.87557 1.90656 1.51607 1.86948 1.13437 1.50231 1.68428 1.08641 1.06525 1.21236 0.86752 0.77990 0.98337 1.43944 1.07947 1.63241 1.10806 1.19098 1.00888 1.16867 1.02622 0.91690 1.25276 0.98799 0.94593 0.99575 1.70014 1.18120 1.29739 1.34527 0.86348 0.78260 0.78139 0.84789 1.19875 1.21401 1.21093 1.21418 0.91188 0.95200 0.91505 1.23008 0.93416 1.04722 1.02127 1.23287 1.06977 0.99243 0.96073 1.21983 1.02007 0.91125 0.85628 0.88203 0.91898 0.91860 0.88210 0.86818 0.92395 0.86443 0.93162 0.88684 0.88534 0.90856 0.91127 0.88936 0.89495 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.32 10.55 -39.25 -0.41 -4.73 16 3 C 0.47 6.64 7.20 36.01 0.26 6.89 16 4 O -0.49 -8.61 15.28 -18.75 -0.29 -8.90 16 5 C -0.10 -1.28 3.67 -90.02 -0.33 -1.61 16 6 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16 7 C -0.15 -1.96 6.41 -26.62 -0.17 -2.13 16 8 C 0.51 9.76 8.02 -10.86 -0.09 9.67 16 9 O -0.55 -12.40 17.04 5.55 0.09 -12.31 16 10 N -0.60 -12.08 3.17 -176.12 -0.56 -12.64 16 11 C 0.36 8.57 6.12 -63.75 -0.39 8.18 16 12 N -0.54 -13.24 2.99 -169.35 -0.51 -13.75 16 13 C -0.27 -6.79 8.47 -15.06 -0.13 -6.91 16 14 H 0.07 1.69 6.74 -52.49 -0.35 1.33 16 15 C 0.02 0.49 4.98 -17.43 -0.09 0.40 16 16 N -0.88 -24.04 11.50 55.49 0.64 -23.40 16 17 Si 0.90 20.23 29.60 -169.99 -5.03 15.20 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.12 2.62 6.56 -67.93 -0.45 2.18 16 22 C -0.19 -4.00 9.80 -26.73 -0.26 -4.27 16 23 C -0.22 -4.61 10.36 -26.73 -0.28 -4.89 16 24 C 0.12 1.96 6.67 -3.12 -0.02 1.93 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.10 1.24 7.90 -51.93 -0.41 0.83 16 29 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.43 7.86 -51.93 -0.41 1.02 16 31 H 0.12 3.03 5.59 -51.93 -0.29 2.74 16 32 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 33 H 0.10 2.20 7.58 -51.93 -0.39 1.81 16 34 H 0.10 2.11 6.46 -51.93 -0.34 1.77 16 35 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 1.64 7.02 -51.93 -0.36 1.28 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -31.20 331.01 -7.44 -38.65 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.50 Total: 6.05 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -0.87 Total: 10.85 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.43 Total: -49.79 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.61 Total: -25.94 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.20 -7.44 -38.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782265091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.754 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds