Wall clock time and date at job start Tue Mar 31 2020 03:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34227 * 116.99905 * 2 1 4 4 O 1.20825 * 120.00335 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00230 * 179.97438 * 3 2 1 6 6 H 1.09004 * 110.88738 * 303.81976 * 5 3 2 7 7 C 1.54863 * 110.99647 * 67.73378 * 5 3 2 8 8 C 1.51277 * 104.20604 * 93.26703 * 7 5 3 9 9 O 1.21286 * 124.94006 * 196.28357 * 8 7 5 10 10 N 1.34418 * 110.11807 * 16.26873 * 8 7 5 11 11 C 1.46503 * 124.34894 * 180.42427 * 10 8 7 12 12 N 1.46495 * 109.47202 * 269.97659 * 11 10 8 13 13 C 1.36943 * 119.99858 * 270.00096 * 12 11 10 14 14 H 1.07995 * 119.99830 * 140.57014 * 13 12 11 15 15 C 1.38813 * 119.99814 * 320.56019 * 13 12 11 16 16 N 1.31615 * 120.00454 * 340.27515 * 15 13 12 17 17 Si 1.86799 * 119.99463 * 160.27034 * 15 13 12 18 18 H 1.48506 * 109.47438 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46874 * 120.00531 * 17 15 13 20 20 H 1.48501 * 109.47322 * 240.00336 * 17 15 13 21 21 C 1.46496 * 120.00040 * 90.00498 * 12 11 10 22 22 C 1.53004 * 117.50065 * 183.28452 * 21 12 11 23 23 C 1.53000 * 117.50116 * 114.66185 * 21 12 11 24 24 C 1.46763 * 111.29997 * 0.40521 * 10 8 7 25 25 H 1.08998 * 109.47004 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46811 * 300.00100 * 1 2 3 27 27 H 1.09009 * 109.46775 * 59.99965 * 1 2 3 28 28 H 1.08999 * 110.46418 * 334.59397 * 7 5 3 29 29 H 1.08995 * 110.60762 * 212.01289 * 7 5 3 30 30 H 1.09001 * 109.46921 * 29.98490 * 11 10 8 31 31 H 1.09005 * 109.46861 * 149.97685 * 11 10 8 32 32 H 0.96998 * 119.99717 * 175.00956 * 16 15 13 33 33 H 1.08998 * 115.54954 * 328.99432 * 21 12 11 34 34 H 1.09002 * 117.49562 * 359.97438 * 22 21 12 35 35 H 1.08994 * 117.50189 * 145.01467 * 22 21 12 36 36 H 1.08999 * 117.49780 * 214.98072 * 23 21 12 37 37 H 1.08997 * 117.49898 * 359.97438 * 23 21 12 38 38 H 1.09003 * 110.24167 * 101.98592 * 24 10 8 39 39 H 1.08995 * 110.24649 * 223.89541 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9837 0.7294 0.8469 7 6 4.1496 0.7567 -1.3371 8 6 4.2960 2.0008 -2.1851 9 8 4.4525 2.0073 -3.3878 10 7 4.2272 3.0981 -1.4118 11 6 4.3233 4.4709 -1.9144 12 7 5.7255 4.8949 -1.9115 13 6 6.2537 5.5063 -0.8057 14 1 7.2592 5.2730 -0.4883 15 6 5.4966 6.4260 -0.0931 16 7 4.4578 7.0029 -0.6592 17 14 5.9521 6.8447 1.6694 18 1 7.1519 6.0662 2.0690 19 1 6.2474 8.2964 1.7728 20 1 4.8193 6.5049 2.5676 21 6 6.5628 4.6650 -3.0914 22 6 8.0379 5.0604 -2.9990 23 6 7.0740 5.8943 -3.8454 24 6 4.0429 2.7443 0.0006 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 3.4610 0.0540 -1.8063 29 1 5.1205 0.2882 -1.1763 30 1 3.9327 4.5138 -2.9311 31 1 3.7419 5.1339 -1.2736 32 1 3.8864 7.5900 -0.1398 33 1 6.3141 3.7815 -3.6793 34 1 8.3853 5.4921 -2.0603 35 1 8.7601 4.4369 -3.5259 36 1 7.1620 5.8193 -4.9292 37 1 6.7870 6.8741 -3.4637 38 1 4.9867 2.8348 0.5383 39 1 3.2877 3.3858 0.4547 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782265091.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:37:59 Heat of formation + Delta-G solvation = -81.385315 kcal Electronic energy + Delta-G solvation = -23265.562297 eV Core-core repulsion = 19788.532860 eV Total energy + Delta-G solvation = -3477.029436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.06542 -40.66624 -38.65460 -37.79202 -37.00240 -35.41985 -33.64023 -31.66181 -29.02369 -28.49508 -27.38570 -25.37992 -24.36755 -23.04950 -21.74418 -21.42710 -20.47424 -18.99707 -18.51100 -17.91590 -17.64297 -17.36531 -17.07097 -16.61612 -16.15122 -15.98618 -15.54855 -14.75893 -14.66284 -14.56261 -14.42392 -13.96095 -13.60696 -13.45888 -13.30009 -13.12933 -12.83839 -12.74145 -12.65453 -12.50362 -12.28431 -12.07621 -11.84991 -11.81223 -11.48226 -11.46981 -11.05220 -10.78621 -10.54864 -9.64726 -8.65030 -7.92795 -5.61016 1.08770 1.44269 1.49151 1.58940 1.61547 1.70813 2.29355 2.49000 3.12124 3.24791 3.35642 3.38198 3.51806 3.72280 3.94062 4.25819 4.28973 4.32550 4.36107 4.43567 4.45610 4.55655 4.65160 4.70495 4.76766 4.82591 4.87557 4.88231 4.99609 5.13871 5.30646 5.33049 5.48842 5.65174 5.78210 6.31055 6.52174 6.67413 7.03651 7.29413 7.67511 8.27292 9.05196 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.006381 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.909292 B = 4387.194674 C = 5497.376991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.467 3.533 4 O -0.534 6.534 5 C -0.082 4.082 6 H 0.184 0.816 7 C -0.126 4.126 8 C 0.492 3.508 9 O -0.590 6.590 10 N -0.612 5.612 11 C 0.377 3.623 12 N -0.555 5.555 13 C -0.264 4.264 14 H 0.063 0.937 15 C -0.024 4.024 16 N -0.917 5.917 17 Si 0.959 3.041 18 H -0.261 1.261 19 H -0.296 1.296 20 H -0.282 1.282 21 C 0.093 3.907 22 C -0.170 4.170 23 C -0.212 4.212 24 C 0.113 3.887 25 H 0.138 0.862 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.117 0.883 29 H 0.151 0.849 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.255 0.745 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.095 0.905 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -15.697 4.790 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.311 3.689 4 O -0.423 6.423 5 C -0.101 4.101 6 H 0.201 0.799 7 C -0.166 4.166 8 C 0.280 3.720 9 O -0.471 6.471 10 N -0.348 5.348 11 C 0.169 3.831 12 N -0.274 5.274 13 C -0.393 4.393 14 H 0.081 0.919 15 C -0.223 4.223 16 N -0.560 5.560 17 Si 0.785 3.215 18 H -0.185 1.185 19 H -0.223 1.223 20 H -0.209 1.209 21 C -0.015 4.015 22 C -0.208 4.208 23 C -0.253 4.253 24 C -0.010 4.010 25 H 0.156 0.844 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.135 0.865 29 H 0.168 0.832 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.196 -15.104 4.206 16.001 hybrid contribution -0.377 1.157 0.578 1.347 sum -3.574 -13.947 4.784 15.172 Atomic orbital electron populations 1.23561 0.74909 1.05853 1.02238 1.86476 1.24783 1.31947 1.83625 1.23826 0.92363 0.81370 0.71341 1.90718 1.67767 1.37736 1.46061 1.22169 0.86862 0.97988 1.03125 0.79916 1.22406 1.06304 0.95552 0.92315 1.21704 0.75135 0.87699 0.87463 1.90624 1.53221 1.87824 1.15477 1.49972 1.68542 1.07744 1.08498 1.20612 0.86401 0.79679 0.96387 1.44014 1.08012 1.64057 1.11277 1.19211 1.00769 1.16440 1.02924 0.91905 1.25957 0.98840 0.94587 1.02884 1.70148 1.19340 1.30730 1.35760 0.85379 0.78331 0.77239 0.80506 1.18489 1.22305 1.20852 1.21482 0.92759 0.95595 0.91644 1.23004 0.92550 1.03729 1.01475 1.23206 1.07282 0.97226 0.97544 1.22056 1.01980 0.93724 0.83262 0.84413 0.91853 0.92910 0.86463 0.83172 0.94946 0.88977 0.93594 0.89273 0.89749 0.87515 0.88607 0.91912 0.88668 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -7.40 10.55 -51.39 -0.54 -7.95 16 3 C 0.47 12.36 7.20 71.24 0.51 12.87 16 4 O -0.53 -18.77 15.28 21.97 0.34 -18.43 16 5 C -0.08 -1.83 3.67 -10.40 -0.04 -1.87 16 6 H 0.18 2.21 8.14 -2.39 -0.02 2.19 16 7 C -0.13 -2.96 6.41 30.67 0.20 -2.76 16 8 C 0.49 18.66 8.02 87.90 0.71 19.36 16 9 O -0.59 -26.99 17.04 -3.05 -0.05 -27.04 16 10 N -0.61 -24.88 3.17 -829.72 -2.63 -27.51 16 11 C 0.38 18.67 6.12 170.96 1.05 19.72 16 12 N -0.55 -27.80 2.99 -689.69 -2.06 -29.86 16 13 C -0.26 -13.65 8.47 84.03 0.71 -12.94 16 14 H 0.06 3.25 6.74 -2.91 -0.02 3.23 16 15 C -0.02 -1.28 4.98 84.86 0.42 -0.86 16 16 N -0.92 -51.80 11.50 21.65 0.25 -51.55 16 17 Si 0.96 41.90 29.60 68.60 2.03 43.93 16 18 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 19 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 C 0.09 4.28 6.56 44.99 0.30 4.57 16 22 C -0.17 -6.77 9.80 30.60 0.30 -6.47 16 23 C -0.21 -9.09 10.36 30.59 0.32 -8.77 16 24 C 0.11 3.68 6.67 86.83 0.58 4.26 16 25 H 0.14 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 27 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.12 2.45 7.90 -2.39 -0.02 2.43 16 29 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.03 1.72 7.86 -2.39 -0.02 1.70 16 31 H 0.09 5.05 5.59 -2.38 -0.01 5.04 16 32 H 0.25 13.93 8.32 -92.71 -0.77 13.16 16 33 H 0.09 4.19 7.58 -2.39 -0.02 4.17 16 34 H 0.08 3.60 6.46 -2.39 -0.02 3.58 16 35 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 36 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 37 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 39 H 0.07 2.55 7.02 -2.39 -0.02 2.54 16 Total: -1.00 -71.56 331.01 4.63 -66.93 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 1.05 Total: 22.71 kcal Atomic # 6 Polarization: 22.52 SS G_CDS: 6.25 Total: 28.76 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -4.44 Total: -108.92 kcal Atomic # 8 Polarization: -53.16 SS G_CDS: -0.26 Total: -53.42 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.56 4.63 -66.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782265091.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.452 kcal (2) G-P(sol) polarization free energy of solvation -71.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds