Wall clock time and date at job start Tue Mar 31 2020 03:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.46921 * 2 1 4 4 C 1.50706 * 109.47095 * 240.00502 * 2 1 3 5 5 O 1.20823 * 119.99615 * 239.99470 * 4 2 1 6 6 O 1.34225 * 120.00191 * 60.00040 * 4 2 1 7 7 C 1.45198 * 117.00146 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47318 * 179.97438 * 7 6 4 9 9 O 1.42910 * 109.47164 * 64.99515 * 8 7 6 10 10 C 1.42896 * 113.99791 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46876 * 179.97438 * 10 9 8 12 12 H 1.08008 * 119.99958 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00267 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99778 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00258 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47191 * 59.99841 * 15 13 11 17 17 H 1.48501 * 109.47127 * 180.02562 * 15 13 11 18 18 H 1.48509 * 109.47040 * 300.00217 * 15 13 11 19 19 C 1.50700 * 109.47419 * 120.00183 * 2 1 3 20 20 C 1.39873 * 126.03825 * 59.97770 * 19 2 1 21 21 N 1.30832 * 108.20166 * 179.97438 * 20 19 2 22 22 N 1.40085 * 108.20599 * 359.97438 * 21 20 19 23 23 C 1.46500 * 126.03813 * 179.74170 * 22 21 20 24 24 C 1.34943 * 107.92716 * 0.02562 * 22 21 20 25 25 H 1.08997 * 109.47105 * 299.99637 * 1 2 3 26 26 H 1.08997 * 109.47204 * 60.00020 * 1 2 3 27 27 H 1.09007 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46597 * 299.99381 * 7 6 4 29 29 H 1.08992 * 109.47628 * 59.99011 * 7 6 4 30 30 H 1.08996 * 109.47126 * 184.99325 * 8 7 6 31 31 H 1.08997 * 109.47237 * 304.99841 * 8 7 6 32 32 H 1.08996 * 109.47363 * 299.99789 * 10 9 8 33 33 H 1.08999 * 109.47438 * 60.00415 * 10 9 8 34 34 H 0.96998 * 120.00540 * 180.02562 * 14 13 11 35 35 H 1.07999 * 125.89561 * 359.95652 * 20 19 2 36 36 H 1.08997 * 109.47763 * 90.01881 * 23 22 21 37 37 H 1.09004 * 109.47211 * 210.02331 * 23 22 21 38 38 H 1.09012 * 109.46942 * 330.02017 * 23 22 21 39 39 H 1.07996 * 126.13000 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7270 -1.6926 -1.1197 6 8 1.7081 -0.2517 -2.4496 7 6 2.2268 -0.9861 -3.5897 8 6 1.7548 -0.3195 -4.8835 9 8 2.3270 0.9863 -4.9827 10 6 1.9473 1.6991 -6.1616 11 6 2.6041 3.0554 -6.1618 12 1 3.2475 3.3440 -5.3437 13 6 2.3845 3.9276 -7.2069 14 7 1.6015 3.5760 -8.2033 15 14 3.1992 5.6085 -7.2076 16 1 4.6748 5.4434 -7.1821 17 1 2.8046 6.3494 -8.4326 18 1 2.7655 6.3693 -6.0082 19 6 2.0324 -0.7104 1.2304 20 6 1.7732 -2.0408 1.5760 21 7 2.3779 -2.2942 2.7082 22 7 3.0425 -1.1315 3.1192 23 6 3.8385 -0.9795 4.3396 24 6 2.8147 -0.1744 2.1956 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.3163 -0.9857 -3.5569 29 1 1.8627 -2.0129 -3.5567 30 1 2.0692 -0.9198 -5.7372 31 1 0.6677 -0.2401 -4.8757 32 1 2.2653 1.1409 -7.0420 33 1 0.8642 1.8204 -6.1799 34 1 1.4472 4.1894 -8.9387 35 1 1.1767 -2.7382 1.0067 36 1 4.8760 -1.2411 4.1317 37 1 3.7859 0.0542 4.6813 38 1 3.4458 -1.6386 5.1140 39 1 3.1901 0.8379 2.2217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815215619.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:13 Heat of formation + Delta-G solvation = -59.806575 kcal Electronic energy + Delta-G solvation = -21397.352986 eV Core-core repulsion = 17921.259274 eV Total energy + Delta-G solvation = -3476.093712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.51673 -40.11233 -37.07030 -35.97030 -34.67577 -32.86270 -32.72043 -30.15086 -29.53669 -26.94117 -26.73933 -24.80197 -22.59547 -22.24103 -21.39601 -21.19196 -19.80766 -17.44058 -17.12991 -16.52305 -16.39466 -15.92253 -15.54780 -15.29725 -14.77065 -14.54171 -14.30725 -14.20191 -13.61245 -13.31896 -13.11436 -12.85944 -12.81279 -12.76744 -12.15614 -11.92172 -11.77827 -11.69479 -11.38712 -10.91130 -10.83673 -10.74187 -10.66367 -10.30256 -10.16484 -10.01452 -9.56577 -9.13310 -8.86103 -8.60905 -8.20020 -6.11364 -4.13070 1.68255 2.30628 2.41240 2.50258 3.10048 3.32206 3.34795 3.38687 4.24548 4.33048 4.58962 4.65681 4.76957 4.81648 4.85061 5.03248 5.06840 5.10296 5.23848 5.25083 5.30144 5.51020 5.52306 5.57907 5.77553 5.88038 5.91772 5.99198 6.08631 6.15228 6.45713 6.70877 6.78919 7.06869 7.41051 7.51730 7.78340 7.99653 8.13544 8.54022 8.99311 9.51558 11.00174 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.025188 B = 0.002911 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.352853 B = 9615.471777 C =10217.431657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.001 4.001 3 H 0.114 0.886 4 C 0.462 3.538 5 O -0.509 6.509 6 O -0.340 6.340 7 C 0.074 3.926 8 C 0.062 3.938 9 O -0.391 6.391 10 C 0.195 3.805 11 C -0.515 4.515 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.225 4.225 20 C 0.081 3.919 21 N -0.302 5.302 22 N -0.379 5.379 23 C 0.103 3.897 24 C 0.067 3.933 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.265 0.735 35 H 0.179 0.821 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -8.372 21.769 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 H 0.132 0.868 4 C 0.305 3.695 5 O -0.397 6.397 6 O -0.256 6.256 7 C 0.001 3.999 8 C -0.016 4.016 9 O -0.311 6.311 10 C 0.120 3.880 11 C -0.553 4.553 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.736 3.264 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.237 4.237 20 C -0.106 4.106 21 N -0.123 5.123 22 N -0.161 5.161 23 C -0.038 4.038 24 C -0.079 4.079 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.074 0.926 35 H 0.196 0.804 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.067 -9.388 22.771 24.631 hybrid contribution 0.249 1.256 -1.100 1.688 sum 0.182 -8.132 21.672 23.148 Atomic orbital electron populations 1.21756 0.91471 1.02881 1.03528 1.19130 0.97694 0.99423 0.85938 0.86815 1.23657 0.77642 0.82995 0.85234 1.90639 1.35542 1.26107 1.87451 1.86592 1.69024 1.55410 1.14544 1.23176 0.99884 0.94173 0.82688 1.22320 0.97911 0.87825 0.93519 1.87916 1.71321 1.25446 1.46375 1.20224 0.95131 0.91170 0.81436 1.21015 1.29153 0.98533 1.06646 0.91570 1.24948 0.95420 0.99064 0.95066 1.69948 1.37218 1.36812 1.09837 0.86384 0.79727 0.82889 0.77400 1.20031 1.21161 1.19970 1.19472 1.09228 0.95725 0.99262 1.23619 0.98172 0.95523 0.93250 1.77362 1.13540 1.05757 1.15594 1.48401 1.40296 1.08316 1.19088 1.21840 0.94740 1.03483 0.83768 1.22282 0.99052 0.95861 0.90739 0.91151 0.90560 0.92209 0.90676 0.90554 0.92083 0.93190 0.97658 0.97486 0.92577 0.80409 0.90765 0.89469 0.89374 0.80693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.01 37.16 0.33 -0.97 16 2 C 0.00 -0.02 3.19 -92.92 -0.30 -0.31 16 3 H 0.11 1.12 8.11 -51.93 -0.42 0.70 16 4 C 0.46 6.87 7.21 36.01 0.26 7.13 16 5 O -0.51 -8.68 15.12 -18.75 -0.28 -8.97 16 6 O -0.34 -5.63 10.09 -42.01 -0.42 -6.06 16 7 C 0.07 1.20 5.84 37.16 0.22 1.42 16 8 C 0.06 1.14 6.33 37.16 0.24 1.37 16 9 O -0.39 -9.48 10.30 -38.80 -0.40 -9.88 16 10 C 0.19 5.32 5.69 36.01 0.20 5.53 16 11 C -0.52 -15.18 9.43 -34.44 -0.32 -15.50 16 12 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 15 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.23 -2.58 4.36 -105.05 -0.46 -3.04 16 20 C 0.08 1.00 10.77 -17.37 -0.19 0.81 16 21 N -0.30 -3.90 12.58 30.62 0.39 -3.51 16 22 N -0.38 -3.89 4.01 -68.16 -0.27 -4.17 16 23 C 0.10 0.58 11.47 59.85 0.69 1.27 16 24 C 0.07 0.65 11.38 -17.23 -0.20 0.46 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.76 8.11 -51.93 -0.42 0.34 16 27 H 0.06 0.54 8.02 -51.92 -0.42 0.12 16 28 H 0.07 1.25 8.13 -51.92 -0.42 0.83 16 29 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 344.29 15.07 5.19 5.19 Total: -1.00 -35.91 344.29 -5.59 -41.50 By element: Atomic # 1 Polarization: 1.41 SS G_CDS: -5.88 Total: -4.47 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 0.38 Total: -0.31 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.85 Total: -33.73 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.11 Total: -24.91 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.91 -5.59 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815215619.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.303 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds