Wall clock time and date at job start Tue Mar 31 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.52991 * 109.47655 * 124.99832 * 6 5 4 8 8 C 1.50699 * 109.47655 * 179.97438 * 7 6 5 9 9 O 1.20831 * 119.99523 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00353 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99931 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47258 * 179.97438 * 11 10 8 13 13 O 1.42904 * 109.46853 * 64.99960 * 12 11 10 14 14 C 1.42899 * 113.99906 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47247 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00041 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00295 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99870 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00157 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47072 * 90.00747 * 19 17 15 21 21 H 1.48505 * 109.47224 * 210.00117 * 19 17 15 22 22 H 1.48493 * 109.47274 * 330.00314 * 19 17 15 23 23 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 24 24 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 25 25 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 26 26 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 27 27 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 28 28 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 29 29 H 1.09002 * 109.46897 * 245.00208 * 6 5 4 30 30 H 1.09007 * 109.46619 * 4.99549 * 6 5 4 31 31 H 1.09002 * 109.47275 * 300.00144 * 7 6 5 32 32 H 1.09007 * 109.47338 * 60.00157 * 7 6 5 33 33 H 1.09000 * 109.47026 * 299.99673 * 11 10 8 34 34 H 1.09001 * 109.47206 * 60.00111 * 11 10 8 35 35 H 1.08995 * 109.47240 * 184.99707 * 12 11 10 36 36 H 1.08995 * 109.47015 * 304.99999 * 12 11 10 37 37 H 1.09000 * 109.47164 * 299.99948 * 14 13 12 38 38 H 1.09010 * 109.47065 * 59.99847 * 14 13 12 39 39 H 0.97000 * 120.00666 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 4.6719 -2.5864 1.1938 8 6 5.8866 -3.4784 1.1974 9 8 6.7284 -3.3561 0.3393 10 8 6.0338 -4.4080 2.1543 11 6 7.2286 -5.2310 2.0956 12 6 7.2214 -6.2244 3.2593 13 8 6.1289 -7.1323 3.1037 14 6 6.0305 -8.1070 4.1441 15 6 4.8501 -9.0059 3.8804 16 1 4.2366 -8.8489 3.0054 17 6 4.5539 -10.0294 4.7554 18 7 5.3012 -10.2210 5.8205 19 14 3.0912 -11.1441 4.4280 20 1 3.5262 -12.3039 3.6088 21 1 2.5396 -11.6290 5.7188 22 1 2.0449 -10.3858 3.6963 23 7 2.2892 -1.1327 0.0055 24 1 -0.3633 0.0046 1.0276 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8922 -0.5099 27 1 1.9281 2.1194 0.0004 28 1 4.4211 1.2964 -0.0061 29 1 4.7853 -2.1932 -0.9212 30 1 5.6483 -1.0125 0.0937 31 1 4.6362 -2.0168 2.1224 32 1 3.7733 -3.1974 1.1076 33 1 7.2481 -5.7764 1.1521 34 1 8.1114 -4.5956 2.1663 35 1 8.1583 -6.7813 3.2674 36 1 7.1126 -5.6826 4.1988 37 1 6.9427 -8.7030 4.1710 38 1 5.8968 -7.6039 5.1019 39 1 5.0931 -10.9413 6.4359 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815250510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:30 Heat of formation + Delta-G solvation = -65.331626 kcal Electronic energy + Delta-G solvation = -20767.601663 eV Core-core repulsion = 17291.268367 eV Total energy + Delta-G solvation = -3476.333296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.43385 -40.24001 -37.11350 -36.04938 -34.79684 -32.75496 -32.24373 -30.31654 -30.01175 -27.50431 -26.82947 -24.76191 -22.46675 -22.09094 -21.43344 -20.69322 -19.67753 -17.70460 -17.06931 -16.64185 -16.54717 -16.05525 -15.65814 -15.48205 -14.73597 -14.52410 -14.33444 -14.16459 -13.76873 -13.60789 -13.16357 -12.97955 -12.69019 -12.49263 -12.39644 -12.10490 -11.83816 -11.44017 -11.38412 -10.89893 -10.82582 -10.74148 -10.72862 -10.34331 -10.28521 -10.01967 -9.47931 -9.10598 -8.85106 -8.82338 -8.18827 -6.10052 -4.11502 1.62044 2.23826 2.36476 2.48291 2.93298 3.31867 3.36618 3.42681 4.18493 4.34759 4.46720 4.61018 4.76390 4.80345 4.80913 4.89957 5.04418 5.08451 5.26521 5.27457 5.33055 5.47988 5.50061 5.51587 5.66717 5.87718 5.89467 5.91214 5.97321 6.14219 6.40032 6.69147 6.72980 7.07876 7.42210 7.47795 7.80325 7.93045 8.14886 8.55297 9.01346 9.53177 11.01561 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.002805 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.230260 B = 9978.099967 C =11404.551743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.378 5.378 3 C 0.051 3.949 4 C -0.267 4.267 5 C 0.075 3.925 6 C -0.025 4.025 7 C -0.109 4.109 8 C 0.463 3.537 9 O -0.520 6.520 10 O -0.341 6.341 11 C 0.074 3.926 12 C 0.061 3.939 13 O -0.391 6.391 14 C 0.194 3.806 15 C -0.514 4.514 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.271 1.271 23 N -0.289 5.289 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.173 0.827 28 H 0.148 0.852 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.006 0.994 38 H 0.007 0.993 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.656 24.325 -10.334 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.160 5.160 3 C -0.095 4.095 4 C -0.296 4.296 5 C -0.091 4.091 6 C -0.064 4.064 7 C -0.147 4.147 8 C 0.306 3.694 9 O -0.409 6.409 10 O -0.257 6.257 11 C 0.000 4.000 12 C -0.016 4.016 13 O -0.311 6.311 14 C 0.120 3.880 15 C -0.552 4.552 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 N -0.112 5.112 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.190 0.810 28 H 0.166 0.834 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.474 23.224 -10.557 26.092 hybrid contribution 0.045 0.106 0.201 0.232 sum -5.429 23.330 -10.355 26.096 Atomic orbital electron populations 1.21866 0.74175 1.04492 1.03504 1.48542 1.06688 1.03817 1.56937 1.22536 0.91214 0.93464 1.02257 1.21430 0.97102 0.94320 1.16798 1.22229 0.93153 0.94000 0.99717 1.19799 0.92633 0.95269 0.98685 1.21308 0.95511 0.96719 1.01185 1.23632 0.87592 0.79300 0.78829 1.90638 1.43702 1.69153 1.37449 1.86606 1.44805 1.44635 1.49614 1.23205 0.84716 0.91172 1.00869 1.22325 0.92250 0.90996 0.96069 1.87921 1.47317 1.44950 1.50862 1.20236 0.96994 0.85504 0.85273 1.21059 1.11924 1.12856 1.09399 0.91494 1.24951 0.97336 0.97452 0.94797 1.69960 1.39103 1.31957 1.12840 0.86322 0.82106 0.80421 0.77571 1.20465 1.21079 1.19577 1.77378 1.01293 1.07766 1.24723 0.90638 0.89558 0.89163 0.80961 0.83387 0.89120 0.88920 0.87617 0.86907 0.90501 0.90447 0.91998 0.93222 0.97617 0.97498 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.47 59.85 0.69 1.21 16 2 N -0.38 -3.54 4.01 -68.16 -0.27 -3.81 16 3 C 0.05 0.40 11.49 -17.22 -0.20 0.20 16 4 C -0.27 -2.43 10.72 -40.01 -0.43 -2.86 16 5 C 0.08 0.84 6.49 -82.41 -0.53 0.31 16 6 C -0.02 -0.26 5.08 -27.89 -0.14 -0.40 16 7 C -0.11 -1.28 5.77 -27.89 -0.16 -1.45 16 8 C 0.46 6.94 7.96 36.01 0.29 7.23 16 9 O -0.52 -8.57 15.73 -18.75 -0.30 -8.87 16 10 O -0.34 -5.89 10.19 -42.01 -0.43 -6.32 16 11 C 0.07 1.21 5.84 37.16 0.22 1.43 16 12 C 0.06 1.15 6.33 37.16 0.24 1.39 16 13 O -0.39 -9.70 10.30 -38.80 -0.40 -10.10 16 14 C 0.19 5.40 5.69 36.00 0.20 5.61 16 15 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 16 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.91 22.12 29.54 -169.99 -5.02 17.10 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 23 N -0.29 -3.58 12.54 33.67 0.42 -3.16 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.17 0.65 8.06 -52.48 -0.42 0.23 16 28 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 30 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.29 8.13 -51.93 -0.42 0.86 16 34 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.01 0.21 8.14 -51.92 -0.42 -0.22 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -36.31 346.62 -6.17 -42.48 By element: Atomic # 1 Polarization: 1.27 SS G_CDS: -5.88 Total: -4.61 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.26 Total: -1.55 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.89 Total: -33.36 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.12 Total: -25.28 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.31 -6.17 -42.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815250510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.849 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds