Wall clock time and date at job start Tue Mar 31 2020 03:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.52991 * 109.47655 * 124.99832 * 6 5 4 8 8 C 1.50699 * 109.47655 * 179.97438 * 7 6 5 9 9 O 1.20831 * 119.99523 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00353 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99931 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47258 * 179.97438 * 11 10 8 13 13 O 1.42904 * 109.46853 * 64.99960 * 12 11 10 14 14 C 1.42899 * 113.99906 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47247 * 179.97438 * 14 13 12 16 16 H 1.08007 * 120.00041 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00295 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99870 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00157 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47072 * 90.00747 * 19 17 15 21 21 H 1.48505 * 109.47224 * 210.00117 * 19 17 15 22 22 H 1.48493 * 109.47274 * 330.00314 * 19 17 15 23 23 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 24 24 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 25 25 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 26 26 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 27 27 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 28 28 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 29 29 H 1.09002 * 109.46897 * 245.00208 * 6 5 4 30 30 H 1.09007 * 109.46619 * 4.99549 * 6 5 4 31 31 H 1.09002 * 109.47275 * 300.00144 * 7 6 5 32 32 H 1.09007 * 109.47338 * 60.00157 * 7 6 5 33 33 H 1.09000 * 109.47026 * 299.99673 * 11 10 8 34 34 H 1.09001 * 109.47206 * 60.00111 * 11 10 8 35 35 H 1.08995 * 109.47240 * 184.99707 * 12 11 10 36 36 H 1.08995 * 109.47015 * 304.99999 * 12 11 10 37 37 H 1.09000 * 109.47164 * 299.99948 * 14 13 12 38 38 H 1.09010 * 109.47065 * 59.99847 * 14 13 12 39 39 H 0.97000 * 120.00666 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 4.6719 -2.5864 1.1938 8 6 5.8866 -3.4784 1.1974 9 8 6.7284 -3.3561 0.3393 10 8 6.0338 -4.4080 2.1543 11 6 7.2286 -5.2310 2.0956 12 6 7.2214 -6.2244 3.2593 13 8 6.1289 -7.1323 3.1037 14 6 6.0305 -8.1070 4.1441 15 6 4.8501 -9.0059 3.8804 16 1 4.2366 -8.8489 3.0054 17 6 4.5539 -10.0294 4.7554 18 7 5.3012 -10.2210 5.8205 19 14 3.0912 -11.1441 4.4280 20 1 3.5262 -12.3039 3.6088 21 1 2.5396 -11.6290 5.7188 22 1 2.0449 -10.3858 3.6963 23 7 2.2892 -1.1327 0.0055 24 1 -0.3633 0.0046 1.0276 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8922 -0.5099 27 1 1.9281 2.1194 0.0004 28 1 4.4211 1.2964 -0.0061 29 1 4.7853 -2.1932 -0.9212 30 1 5.6483 -1.0125 0.0937 31 1 4.6362 -2.0168 2.1224 32 1 3.7733 -3.1974 1.1076 33 1 7.2481 -5.7764 1.1521 34 1 8.1114 -4.5956 2.1663 35 1 8.1583 -6.7813 3.2674 36 1 7.1126 -5.6826 4.1988 37 1 6.9427 -8.7030 4.1710 38 1 5.8968 -7.6039 5.1019 39 1 5.0931 -10.9413 6.4359 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815250510.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:29 Heat of formation + Delta-G solvation = -89.076829 kcal Electronic energy + Delta-G solvation = -20768.631332 eV Core-core repulsion = 17291.268367 eV Total energy + Delta-G solvation = -3477.362965 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.11999 -41.47937 -38.79592 -37.53358 -35.60937 -34.95643 -33.01704 -31.64364 -30.91021 -29.10937 -28.09073 -25.61627 -24.56221 -23.56647 -22.12471 -21.79550 -20.45778 -18.84396 -18.69174 -18.01346 -17.79064 -17.35012 -17.15570 -16.50737 -16.31061 -16.18920 -15.47236 -15.23794 -14.86282 -14.51053 -14.31922 -14.07952 -13.83655 -13.50296 -13.43276 -13.20631 -13.04541 -12.91743 -12.90192 -12.70229 -12.43329 -12.28982 -12.00883 -11.71701 -11.56939 -11.44590 -11.28858 -10.90251 -10.28056 -10.20549 -9.46865 -8.33376 -6.45575 0.96371 1.15729 1.39484 1.42299 1.54541 1.58049 1.73133 1.92835 2.33956 3.00384 3.06705 3.49828 3.71931 3.84144 3.94043 4.08186 4.11361 4.14671 4.23796 4.42656 4.45773 4.49741 4.55122 4.66286 4.70379 4.72052 4.84126 4.84587 4.97216 5.03107 5.16565 5.17963 5.44319 5.53314 5.70824 5.94134 6.20755 6.49021 6.70116 6.77952 6.78976 7.25997 8.78892 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.016484 B = 0.002805 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.230260 B = 9978.099967 C =11404.551743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.384 5.384 3 C 0.062 3.938 4 C -0.285 4.285 5 C 0.060 3.940 6 C -0.017 4.017 7 C -0.099 4.099 8 C 0.465 3.535 9 O -0.535 6.535 10 O -0.362 6.362 11 C 0.077 3.923 12 C 0.052 3.948 13 O -0.410 6.410 14 C 0.208 3.792 15 C -0.551 4.551 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.929 5.929 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.266 1.266 23 N -0.338 5.338 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.082 0.918 27 H 0.216 0.784 28 H 0.166 0.834 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.056 0.944 37 H -0.007 1.007 38 H -0.010 1.010 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 25.662 -10.679 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.085 4.085 4 C -0.314 4.314 5 C -0.105 4.105 6 C -0.056 4.056 7 C -0.137 4.137 8 C 0.310 3.690 9 O -0.426 6.426 10 O -0.278 6.278 11 C 0.004 3.996 12 C -0.024 4.024 13 O -0.331 6.331 14 C 0.133 3.867 15 C -0.589 4.589 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.568 5.568 19 Si 0.806 3.194 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.191 1.191 23 N -0.162 5.162 24 H 0.102 0.898 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.232 0.768 28 H 0.183 0.817 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.140 0.860 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.011 0.989 38 H 0.007 0.993 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.504 24.575 -10.909 27.663 hybrid contribution 0.387 -0.202 0.304 0.532 sum -6.117 24.373 -10.605 27.275 Atomic orbital electron populations 1.22174 0.72260 1.05836 1.04478 1.48893 1.07925 1.03535 1.56279 1.23221 0.90583 0.94769 0.99889 1.21756 0.98630 0.93576 1.17486 1.22329 0.92822 0.95098 1.00249 1.19725 0.93424 0.95038 0.97455 1.21335 0.93453 0.96326 1.02629 1.24164 0.88117 0.78798 0.77954 1.90623 1.44544 1.69534 1.37853 1.86602 1.45305 1.45285 1.50617 1.23201 0.85898 0.91209 0.99320 1.22669 0.91344 0.90742 0.97675 1.87866 1.49969 1.45324 1.49897 1.19874 0.95889 0.85699 0.85256 1.21389 1.13111 1.14483 1.09908 0.92297 1.25946 1.00382 0.98653 0.94150 1.70055 1.40636 1.32610 1.13503 0.85187 0.78009 0.78183 0.78062 1.19211 1.19703 1.19077 1.77285 1.02248 1.10044 1.26618 0.89842 0.86171 0.89897 0.76789 0.81655 0.90311 0.87724 0.85961 0.87687 0.91112 0.87073 0.89952 0.92538 0.98919 0.99270 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.47 127.77 1.47 2.28 16 2 N -0.38 -6.65 4.01 -369.57 -1.48 -8.13 16 3 C 0.06 0.80 11.49 83.54 0.96 1.76 16 4 C -0.29 -4.74 10.72 21.99 0.24 -4.51 16 5 C 0.06 1.32 6.49 43.10 0.28 1.60 16 6 C -0.02 -0.37 5.08 29.84 0.15 -0.22 16 7 C -0.10 -2.34 5.77 29.84 0.17 -2.17 16 8 C 0.46 13.87 7.96 71.24 0.57 14.44 16 9 O -0.54 -17.45 15.73 21.95 0.35 -17.10 16 10 O -0.36 -12.46 10.19 -48.71 -0.50 -12.95 16 11 C 0.08 2.48 5.84 71.98 0.42 2.90 16 12 C 0.05 1.96 6.33 71.98 0.46 2.42 16 13 O -0.41 -20.78 10.30 -145.57 -1.50 -22.28 16 14 C 0.21 11.88 5.69 71.23 0.41 12.28 16 15 C -0.55 -33.65 9.43 25.60 0.24 -33.41 16 16 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 17 C 0.01 0.43 5.46 84.66 0.46 0.89 16 18 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 19 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 N -0.34 -8.36 12.54 -47.39 -0.59 -8.95 16 24 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.22 0.73 8.06 -2.91 -0.02 0.70 16 28 H 0.17 1.98 8.06 -2.91 -0.02 1.95 16 29 H 0.08 1.83 8.10 -2.39 -0.02 1.81 16 30 H 0.10 1.91 8.08 -2.38 -0.02 1.90 16 31 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 33 H 0.07 2.36 8.13 -2.39 -0.02 2.34 16 34 H 0.11 2.83 8.13 -2.39 -0.02 2.81 16 35 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 38 H -0.01 -0.62 8.14 -2.38 -0.02 -0.64 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -78.95 346.62 5.43 -73.52 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: 1.03 Total: 6.46 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 5.82 Total: -1.73 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -1.79 Total: -73.02 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -1.65 Total: -52.34 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.95 5.43 -73.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815250510.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.555 kcal (2) G-P(sol) polarization free energy of solvation -78.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds