Wall clock time and date at job start Tue Mar 31 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00138 * 2 1 4 4 H 1.48505 * 109.47399 * 240.00265 * 3 2 1 5 5 H 1.48506 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47164 * 120.00259 * 3 2 1 7 7 C 1.37880 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07990 * 119.99728 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99753 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.49777 * 300.06280 * 9 7 2 11 11 C 1.53040 * 109.49498 * 179.97438 * 9 7 2 12 12 C 1.53030 * 109.53859 * 178.65125 * 11 9 7 13 13 C 1.53190 * 109.31449 * 61.36462 * 12 11 9 14 14 N 1.46925 * 108.77956 * 305.36898 * 13 12 11 15 15 C 1.34770 * 120.63129 * 233.58932 * 14 13 12 16 16 O 1.21282 * 120.00373 * 179.97438 * 15 14 13 17 17 C 1.50703 * 120.00146 * 359.97438 * 15 14 13 18 18 N 1.46499 * 109.46938 * 180.02562 * 17 15 14 19 19 C 1.47093 * 125.55889 * 90.00705 * 18 17 15 20 20 C 1.54091 * 103.77776 * 180.02562 * 19 18 17 21 21 O 1.45704 * 104.12991 * 359.92869 * 20 19 18 22 22 C 1.34001 * 125.56070 * 270.01771 * 18 17 15 23 23 O 1.21513 * 123.07229 * 0.03827 * 22 18 17 24 24 C 1.46921 * 118.73721 * 53.84961 * 14 13 12 25 25 H 0.97004 * 119.99379 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46026 * 58.62961 * 11 9 7 27 27 H 1.09001 * 109.46060 * 298.67681 * 11 9 7 28 28 H 1.09003 * 109.50038 * 301.41687 * 12 11 9 29 29 H 1.09003 * 109.50155 * 181.31511 * 12 11 9 30 30 H 1.09004 * 109.59261 * 185.57497 * 13 12 11 31 31 H 1.09001 * 109.58674 * 65.15276 * 13 12 11 32 32 H 1.09004 * 109.46863 * 60.00532 * 17 15 14 33 33 H 1.08996 * 109.46918 * 300.00602 * 17 15 14 34 34 H 1.09000 * 110.56724 * 61.43908 * 19 18 17 35 35 H 1.08998 * 110.56227 * 298.58609 * 19 18 17 36 36 H 1.09002 * 110.52360 * 118.62859 * 20 19 18 37 37 H 1.09002 * 110.51975 * 241.22721 * 20 19 18 38 38 H 1.09004 * 109.58497 * 65.93370 * 24 14 13 39 39 H 1.09002 * 109.58989 * 186.35400 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6236 -2.5571 0.8889 11 6 2.2449 -3.6629 -0.0018 12 6 1.4810 -4.9885 0.0321 13 6 0.6042 -5.1002 -1.2191 14 7 -0.2545 -3.9108 -1.3026 15 6 -1.5909 -4.0359 -1.4235 16 8 -2.2890 -3.0464 -1.4910 17 6 -2.2180 -5.4053 -1.4746 18 7 -3.6709 -5.2723 -1.6078 19 6 -4.4105 -5.2001 -2.8772 20 6 -5.8814 -5.0669 -2.4378 21 8 -5.8204 -5.0795 -0.9821 22 6 -4.5428 -5.1965 -0.5930 23 8 -4.2064 -5.2307 0.5741 24 6 0.3721 -2.5827 -1.2578 25 1 -0.4849 0.8401 0.0004 26 1 2.8882 -3.5920 0.8752 27 1 2.8550 -3.6183 -0.9040 28 1 0.8517 -5.0231 0.9215 29 1 2.1896 -5.8164 0.0548 30 1 -0.0156 -5.9944 -1.1524 31 1 1.2369 -5.1569 -2.1048 32 1 -1.9849 -5.9462 -0.5574 33 1 -1.8238 -5.9537 -2.3301 34 1 -4.2650 -6.1112 -3.4575 35 1 -4.1019 -4.3262 -3.4509 36 1 -6.3033 -4.1272 -2.7944 37 1 -6.4671 -5.9106 -2.8030 38 1 0.9864 -2.4383 -2.1466 39 1 -0.4008 -1.8152 -1.2167 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824381429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:42 Heat of formation + Delta-G solvation = -127.045323 kcal Electronic energy + Delta-G solvation = -23058.647368 eV Core-core repulsion = 19579.637965 eV Total energy + Delta-G solvation = -3479.009403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.57854 -40.90755 -38.47090 -38.28969 -36.34568 -35.32019 -33.50903 -31.78752 -31.08567 -29.15730 -26.96587 -25.90670 -24.54225 -23.48135 -22.71862 -21.34305 -19.88627 -18.80440 -18.51013 -18.17398 -17.88570 -17.60143 -16.75826 -16.47546 -16.23264 -15.70681 -15.21168 -15.06318 -14.97904 -14.86416 -14.49766 -14.33424 -14.02437 -13.74958 -13.48146 -13.26523 -12.98779 -12.86474 -12.70819 -12.28565 -12.26795 -11.89674 -11.81077 -11.70606 -11.63863 -11.20829 -10.97606 -10.87194 -10.54623 -9.89166 -9.40827 -8.12822 -6.30925 1.21960 1.38481 1.40556 1.48882 1.61535 1.68030 2.27189 2.40818 2.61882 3.15163 3.36393 3.57215 3.67364 4.00103 4.08035 4.19352 4.22130 4.35474 4.39094 4.48814 4.62133 4.72789 4.76824 4.80425 4.82196 4.88324 5.10544 5.18315 5.26785 5.30285 5.36059 5.53131 5.64171 5.89325 5.99057 6.25925 6.30750 6.64064 6.82793 6.86164 7.30252 7.40073 8.90145 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021422 B = 0.004795 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.745479 B = 5837.551792 C = 6583.063560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.007 3.993 3 Si 0.959 3.041 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.036 3.964 10 H -0.023 1.023 11 C -0.105 4.105 12 C -0.131 4.131 13 C 0.101 3.899 14 N -0.608 5.608 15 C 0.473 3.527 16 O -0.591 6.591 17 C 0.138 3.862 18 N -0.611 5.611 19 C 0.064 3.936 20 C 0.036 3.964 21 O -0.349 6.349 22 C 0.639 3.361 23 O -0.579 6.579 24 C 0.127 3.873 25 H 0.258 0.742 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.093 0.907 32 H 0.121 0.879 33 H 0.173 0.827 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.150 0.850 38 H 0.042 0.958 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -17.758 -11.851 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.016 3.984 10 H -0.005 1.005 11 C -0.142 4.142 12 C -0.169 4.169 13 C -0.020 4.020 14 N -0.341 5.341 15 C 0.260 3.740 16 O -0.472 6.472 17 C 0.013 3.987 18 N -0.357 5.357 19 C -0.057 4.057 20 C -0.037 4.037 21 O -0.259 6.259 22 C 0.393 3.607 23 O -0.467 6.467 24 C 0.004 3.996 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.127 0.873 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.138 0.862 33 H 0.191 0.809 34 H 0.162 0.838 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.168 0.832 38 H 0.061 0.939 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.263 -17.141 -11.186 21.134 hybrid contribution 0.291 1.859 0.465 1.939 sum -4.971 -15.282 -10.722 19.318 Atomic orbital electron populations 1.70125 1.07619 1.27234 1.50724 1.25947 0.95502 1.03137 0.94587 0.85590 0.78217 0.78529 0.79229 1.18720 1.21662 1.19395 1.21529 0.93339 0.91555 1.51105 0.91804 1.18997 0.93178 0.94043 0.92151 1.00509 1.21507 0.97563 0.94203 1.00974 1.21945 0.99182 0.98152 0.97610 1.22125 0.93961 0.86739 0.99185 1.48572 1.05981 1.09001 1.70516 1.22037 0.82518 0.93085 0.76350 1.90694 1.62393 1.41947 1.52141 1.21416 0.76256 0.92713 1.08273 1.47635 1.06385 1.74420 1.07256 1.23227 0.89992 1.06661 0.85821 1.24788 0.97335 1.07823 0.73760 1.87307 1.24318 1.86472 1.27776 1.18773 0.80685 0.75574 0.85619 1.90987 1.79272 1.57678 1.18792 1.21715 0.96929 0.83110 0.97829 0.93305 0.93429 0.91885 0.93833 0.87328 0.86495 0.88902 0.86162 0.80937 0.83809 0.89416 0.86740 0.83236 0.93920 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.93 11.41 21.45 0.24 -57.68 16 2 C 0.01 0.42 5.30 84.65 0.45 0.87 16 3 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -30.14 8.56 25.60 0.22 -29.93 16 8 H 0.06 3.41 7.74 -2.92 -0.02 3.39 16 9 C 0.04 1.83 2.26 -11.32 -0.03 1.81 16 10 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 11 C -0.10 -4.01 5.10 30.62 0.16 -3.86 16 12 C -0.13 -3.71 6.08 30.67 0.19 -3.53 16 13 C 0.10 2.50 6.34 86.36 0.55 3.04 16 14 N -0.61 -23.17 2.97 -818.08 -2.43 -25.60 16 15 C 0.47 18.31 7.77 87.66 0.68 18.99 16 16 O -0.59 -30.19 15.84 -3.04 -0.05 -30.24 16 17 C 0.14 3.36 4.84 85.63 0.41 3.77 16 18 N -0.61 -16.09 2.45 -955.38 -2.34 -18.43 16 19 C 0.06 0.94 7.70 86.64 0.67 1.61 16 20 C 0.04 0.51 8.22 72.35 0.59 1.11 16 21 O -0.35 -10.09 11.11 -50.08 -0.56 -10.64 16 22 C 0.64 22.46 8.85 129.91 1.15 23.61 16 23 O -0.58 -26.35 17.55 19.63 0.34 -26.01 16 24 C 0.13 6.31 5.43 86.51 0.47 6.78 16 25 H 0.26 15.78 8.31 -92.71 -0.77 15.00 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.12 1.80 5.93 -2.38 -0.01 1.79 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.12 2.86 7.48 -2.38 -0.02 2.84 16 33 H 0.17 2.01 7.94 -2.39 -0.02 1.99 16 34 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.07 4.26 5.15 -2.39 -0.01 4.24 16 Total: -1.00 -93.05 320.75 3.80 -89.25 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.05 Total: 7.92 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: 5.51 Total: 24.28 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -4.52 Total: -101.72 kcal Atomic # 8 Polarization: -66.63 SS G_CDS: -0.26 Total: -66.89 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -93.05 3.80 -89.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824381429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.800 kcal (2) G-P(sol) polarization free energy of solvation -93.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds