Wall clock time and date at job start Tue Mar 31 2020 02:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00259 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00180 * 3 2 1 5 5 H 1.48501 * 109.46972 * 29.99809 * 3 2 1 6 6 H 1.48500 * 109.47604 * 149.99994 * 3 2 1 7 7 C 1.37876 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00338 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00294 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.52102 * 60.07432 * 9 7 2 11 11 C 1.53034 * 109.50154 * 180.16159 * 9 7 2 12 12 C 1.53346 * 109.61010 * 181.32368 * 11 9 7 13 13 C 1.53195 * 109.14901 * 298.71225 * 12 11 9 14 14 N 1.46919 * 108.89273 * 54.57640 * 13 12 11 15 15 C 1.34778 * 120.63255 * 126.34238 * 14 13 12 16 16 O 1.21281 * 119.99981 * 179.97438 * 15 14 13 17 17 C 1.50699 * 119.99892 * 0.02562 * 15 14 13 18 18 N 1.46503 * 109.47265 * 179.97438 * 17 15 14 19 19 C 1.47092 * 125.55628 * 89.99430 * 18 17 15 20 20 C 1.54094 * 103.77405 * 179.97438 * 19 18 17 21 21 O 1.45704 * 104.00884 * 0.02562 * 20 19 18 22 22 C 1.33770 * 109.47427 * 359.75297 * 21 20 19 23 23 O 1.21506 * 123.07393 * 180.24501 * 22 21 20 24 24 C 1.46933 * 118.74003 * 306.32349 * 14 13 12 25 25 H 0.96995 * 119.99653 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.45836 * 301.33790 * 11 9 7 27 27 H 1.09001 * 109.45754 * 61.30674 * 11 9 7 28 28 H 1.08997 * 109.68637 * 178.74435 * 12 11 9 29 29 H 1.09002 * 109.47277 * 58.54691 * 12 11 9 30 30 H 1.09002 * 109.58720 * 294.71670 * 13 12 11 31 31 H 1.08996 * 109.58651 * 174.43567 * 13 12 11 32 32 H 1.09004 * 109.46826 * 299.99643 * 17 15 14 33 33 H 1.08995 * 109.47623 * 59.99620 * 17 15 14 34 34 H 1.08999 * 110.57160 * 298.55477 * 19 18 17 35 35 H 1.09002 * 110.56838 * 61.41019 * 19 18 17 36 36 H 1.09008 * 110.51902 * 118.63451 * 20 19 18 37 37 H 1.08996 * 110.52243 * 241.37122 * 20 19 18 38 38 H 1.08994 * 109.58580 * 173.39910 * 24 14 13 39 39 H 1.09006 * 109.57831 * 293.67403 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6255 -2.5586 -0.8900 11 6 2.2450 -3.6629 0.0052 12 6 1.4812 -4.9922 -0.0281 13 6 0.6023 -5.0983 1.2222 14 7 -0.2564 -3.9089 1.3023 15 6 -1.5931 -4.0338 1.4213 16 8 -2.2911 -3.0441 1.4870 17 6 -2.2203 -5.4031 1.4738 18 7 -3.6734 -5.2700 1.6044 19 6 -4.6286 -5.1890 0.4888 20 6 -5.9969 -5.0613 1.1858 21 8 -5.6725 -5.0829 2.6062 22 6 -4.3495 -5.2073 2.7596 23 8 -3.8098 -5.2558 3.8472 24 6 0.3697 -2.5807 1.2508 25 1 -0.4849 0.8400 0.0004 26 1 2.8897 -3.5933 -0.8709 27 1 2.8534 -3.6170 0.9084 28 1 2.1882 -5.8215 -0.0473 29 1 0.8532 -5.0282 -0.9183 30 1 1.2337 -5.1536 2.1090 31 1 -0.0173 -5.9927 1.1584 32 1 -1.9856 -5.9455 0.5579 33 1 -1.8274 -5.9501 2.3308 34 1 -4.4277 -4.3105 -0.1244 35 1 -4.5898 -6.0956 -0.1152 36 1 -6.4758 -4.1194 0.9179 37 1 -6.6377 -5.9041 0.9271 38 1 -0.4035 -1.8139 1.2035 39 1 0.9800 -2.4297 2.1413 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824381430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:46 Heat of formation + Delta-G solvation = -100.026542 kcal Electronic energy + Delta-G solvation = -23024.093501 eV Core-core repulsion = 19546.255720 eV Total energy + Delta-G solvation = -3477.837781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52930 -39.41652 -37.13188 -36.78948 -35.19959 -33.44945 -31.83845 -30.49739 -29.77883 -27.96189 -25.08284 -24.40734 -23.70127 -21.92419 -21.44174 -19.81653 -18.41920 -17.59320 -17.21350 -16.81962 -16.62695 -16.04099 -15.28707 -14.99738 -14.53894 -14.34791 -14.10888 -13.77501 -13.75092 -13.55700 -13.12604 -12.71991 -12.58231 -12.51911 -12.32039 -11.96137 -11.71187 -11.02716 -10.96030 -10.72793 -10.57747 -10.52974 -10.43752 -10.26985 -9.93508 -9.70848 -9.16754 -9.11831 -8.62900 -8.45485 -7.79633 -6.02658 -4.11455 2.31757 2.81959 3.13101 3.29117 3.37072 3.39205 3.40849 3.73752 4.07162 4.40832 4.53160 4.61082 4.86283 5.07201 5.08956 5.20837 5.23824 5.27950 5.42155 5.44499 5.60794 5.66979 5.92522 6.09221 6.23443 6.25565 6.54910 6.62749 6.81698 6.92956 7.10910 7.23851 7.33420 7.60423 7.83182 7.95822 8.04774 8.20310 8.35580 8.78630 8.92904 9.54557 11.02613 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.004711 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.846088 B = 5942.105523 C = 6699.724601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.107 3.893 14 N -0.604 5.604 15 C 0.486 3.514 16 O -0.527 6.527 17 C 0.129 3.871 18 N -0.613 5.613 19 C 0.066 3.934 20 C 0.044 3.956 21 O -0.329 6.329 22 C 0.650 3.350 23 O -0.522 6.522 24 C 0.112 3.888 25 H 0.263 0.737 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.843 -14.770 -2.273 16.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.022 3.978 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.017 4.017 14 N -0.338 5.338 15 C 0.270 3.730 16 O -0.403 6.403 17 C 0.004 3.996 18 N -0.359 5.359 19 C -0.057 4.057 20 C -0.031 4.031 21 O -0.239 6.239 22 C 0.404 3.596 23 O -0.406 6.406 24 C -0.008 4.008 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.279 -14.106 -1.477 15.942 hybrid contribution 0.602 0.939 -0.294 1.153 sum -6.677 -13.167 -1.771 14.869 Atomic orbital electron populations 1.69882 1.05768 1.26860 1.49320 1.25052 0.94883 0.99304 0.94770 0.86584 0.79847 0.83453 0.78078 1.20676 1.21177 1.19866 1.21081 0.92928 0.90122 1.51908 0.92336 1.18955 0.92583 0.92333 0.93914 0.95406 1.21682 0.98583 0.93958 1.00656 1.22003 0.98660 0.99222 0.97300 1.21675 0.93726 0.87395 0.98903 1.48524 1.05049 1.09153 1.71065 1.20841 0.82931 0.91208 0.77998 1.90725 1.61130 1.39169 1.49297 1.21225 0.76766 0.96612 1.05013 1.47446 1.06578 1.75903 1.06010 1.22835 0.87451 1.04566 0.90835 1.24263 0.96867 1.05169 0.76789 1.87262 1.22639 1.86694 1.27314 1.18351 0.80257 0.75985 0.85005 1.91031 1.68195 1.55341 1.26071 1.22307 0.98717 0.81192 0.98553 0.92662 0.92983 0.93105 0.92039 0.92154 0.91677 0.91374 0.87179 0.86946 0.88466 0.89025 0.87555 0.87735 0.85995 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 11.39 55.43 0.63 -24.91 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -13.96 8.56 -34.44 -0.29 -14.26 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 11 C -0.11 -2.11 5.11 -26.53 -0.14 -2.25 16 12 C -0.13 -1.97 6.11 -26.45 -0.16 -2.13 16 13 C 0.11 1.53 6.33 -3.71 -0.02 1.51 16 14 N -0.60 -11.69 2.97 -172.77 -0.51 -12.20 16 15 C 0.49 9.44 7.77 -10.99 -0.09 9.36 16 16 O -0.53 -12.83 15.84 5.56 0.09 -12.74 16 17 C 0.13 1.76 4.84 -5.19 -0.03 1.74 16 18 N -0.61 -8.65 2.45 -180.22 -0.44 -9.10 16 19 C 0.07 0.63 7.70 -3.15 -0.02 0.61 16 20 C 0.04 0.38 8.23 37.73 0.31 0.69 16 21 O -0.33 -4.74 11.09 -37.83 -0.42 -5.16 16 22 C 0.65 11.07 8.85 53.71 0.48 11.55 16 23 O -0.52 -10.92 17.54 -19.11 -0.34 -11.25 16 24 C 0.11 2.70 5.40 -3.71 -0.02 2.68 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16 32 H 0.11 1.07 7.69 -51.93 -0.40 0.67 16 33 H 0.11 1.43 7.72 -51.93 -0.40 1.03 16 34 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.12 3.46 5.12 -51.93 -0.27 3.20 16 39 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -36.13 320.68 -7.03 -43.16 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.57 Total: -0.70 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: -0.29 Total: 11.91 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.32 Total: -46.21 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.67 Total: -29.15 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -36.13 -7.03 -43.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824381430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.869 kcal (2) G-P(sol) polarization free energy of solvation -36.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds