Wall clock time and date at job start Tue Mar 31 2020 03:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46865 * 2 1 4 4 C 1.34945 * 126.03783 * 124.97866 * 3 2 1 5 5 C 1.35319 * 107.74610 * 179.74523 * 4 3 2 6 6 C 1.39867 * 107.91938 * 0.39373 * 5 4 3 7 7 C 1.50697 * 125.90058 * 179.86370 * 6 5 4 8 8 C 1.50700 * 109.47266 * 124.71196 * 7 6 5 9 9 O 1.20822 * 119.99958 * 0.02562 * 8 7 6 10 10 O 1.34234 * 120.00068 * 180.02562 * 8 7 6 11 11 C 1.45196 * 116.99938 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47070 * 179.97438 * 11 10 8 13 13 O 1.42899 * 109.47007 * 65.00337 * 12 11 10 14 14 C 1.42908 * 114.00004 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46758 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00495 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99416 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99489 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00382 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47172 * 89.99622 * 19 17 15 21 21 H 1.48493 * 109.47236 * 210.00010 * 19 17 15 22 22 H 1.48502 * 109.46738 * 329.99639 * 19 17 15 23 23 N 1.30839 * 108.20364 * 359.59696 * 6 5 4 24 24 H 1.09007 * 109.46783 * 60.00362 * 1 2 3 25 25 H 1.09004 * 109.46938 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47352 * 300.00260 * 1 2 3 27 27 H 1.09001 * 109.46828 * 239.99711 * 2 1 3 28 28 H 1.08999 * 109.46946 * 119.99448 * 2 1 3 29 29 H 1.08002 * 126.12742 * 359.97438 * 4 3 2 30 30 H 1.07999 * 126.04216 * 180.26827 * 5 4 3 31 31 H 1.09004 * 109.47205 * 4.71290 * 7 6 5 32 32 H 1.08997 * 109.47395 * 244.71782 * 7 6 5 33 33 H 1.08996 * 109.47465 * 299.99911 * 11 10 8 34 34 H 1.08999 * 109.47008 * 59.99921 * 11 10 8 35 35 H 1.09001 * 109.47541 * 185.00107 * 12 11 10 36 36 H 1.09002 * 109.47459 * 305.00456 * 12 11 10 37 37 H 1.08995 * 109.46896 * 299.99942 * 14 13 12 38 38 H 1.09001 * 109.46731 * 60.00092 * 14 13 12 39 39 H 0.96998 * 119.99982 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8727 1.9212 0.8941 5 6 3.0758 3.2122 0.5428 6 6 2.3126 3.4724 -0.6000 7 6 2.2361 4.7880 -1.3309 8 6 2.5938 4.5793 -2.7799 9 8 2.8808 3.4754 -3.1783 10 8 2.5934 5.6199 -3.6279 11 6 2.9485 5.3451 -5.0087 12 6 2.8925 6.6425 -5.8176 13 8 3.8940 7.5440 -5.3420 14 6 3.9268 8.7940 -6.0339 15 6 5.0135 9.6614 -5.4527 16 1 5.6189 9.2947 -4.6369 17 6 5.2356 10.9228 -5.9632 18 7 6.1836 11.6800 -5.4557 19 14 4.1891 11.5568 -7.3747 20 1 2.9973 12.2568 -6.8317 21 1 4.9867 12.5020 -8.1965 22 1 3.7514 10.4154 -8.2178 23 7 1.6809 2.3746 -0.9283 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.3179 1.4131 1.7367 30 1 3.7129 3.9176 1.0556 31 1 2.9350 5.4941 -0.8822 32 1 1.2234 5.1847 -1.2600 33 1 3.9573 4.9343 -5.0496 34 1 2.2458 4.6251 -5.4281 35 1 3.0718 6.4226 -6.8700 36 1 1.9092 7.0992 -5.7043 37 1 4.1274 8.6190 -7.0908 38 1 2.9650 9.2950 -5.9245 39 1 6.3401 12.5672 -5.8150 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845293596.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:18:36 Heat of formation + Delta-G solvation = -81.556439 kcal Electronic energy + Delta-G solvation = -21059.995088 eV Core-core repulsion = 17582.958231 eV Total energy + Delta-G solvation = -3477.036857 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24207 -41.31083 -38.81895 -37.45236 -35.64290 -34.87816 -32.89934 -31.76708 -30.75465 -29.69571 -29.00209 -24.72803 -24.02268 -23.64736 -22.35448 -22.04925 -20.45225 -19.09330 -18.79140 -18.02895 -17.89955 -17.30238 -17.09149 -16.46206 -16.28679 -16.23031 -15.26503 -15.08744 -14.81487 -14.70492 -14.46390 -14.27174 -13.78345 -13.72341 -13.46427 -13.24373 -13.01215 -12.95177 -12.89245 -12.62475 -12.28938 -12.23811 -11.84708 -11.70747 -11.61868 -11.41408 -11.33722 -10.91905 -10.39978 -10.23755 -9.48193 -8.35655 -6.43931 0.93574 1.19959 1.35677 1.39117 1.48795 1.49719 1.65946 2.06232 2.31325 2.95552 2.97097 3.40151 3.78097 3.82357 3.93842 4.04911 4.10497 4.11662 4.26662 4.35193 4.37682 4.46886 4.49956 4.59163 4.65893 4.71363 4.80220 4.86864 4.93936 5.01183 5.09874 5.21518 5.42622 5.44076 5.67735 5.92579 6.21379 6.59600 6.70215 6.75689 6.76944 7.20046 8.81505 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.038807 B = 0.002570 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.338148 B =10893.928338 C =11345.228499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 N -0.377 5.377 4 C 0.058 3.942 5 C -0.282 4.282 6 C 0.055 3.945 7 C -0.028 4.028 8 C 0.462 3.538 9 O -0.532 6.532 10 O -0.357 6.357 11 C 0.075 3.925 12 C 0.052 3.948 13 O -0.406 6.406 14 C 0.178 3.822 15 C -0.547 4.547 16 H 0.028 0.972 17 C 0.011 3.989 18 N -0.942 5.942 19 Si 0.958 3.042 20 H -0.259 1.259 21 H -0.275 1.275 22 H -0.243 1.243 23 N -0.311 5.311 24 H 0.042 0.958 25 H 0.099 0.901 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.134 0.866 29 H 0.216 0.784 30 H 0.167 0.833 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.018 0.982 38 H 0.016 0.984 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 -22.756 11.828 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 N -0.160 5.160 4 C -0.087 4.087 5 C -0.311 4.311 6 C -0.110 4.110 7 C -0.067 4.067 8 C 0.305 3.695 9 O -0.422 6.422 10 O -0.273 6.273 11 C 0.002 3.998 12 C -0.025 4.025 13 O -0.326 6.326 14 C 0.102 3.898 15 C -0.585 4.585 16 H 0.047 0.953 17 C -0.187 4.187 18 N -0.582 5.582 19 Si 0.779 3.221 20 H -0.183 1.183 21 H -0.200 1.200 22 H -0.166 1.166 23 N -0.135 5.135 24 H 0.061 0.939 25 H 0.118 0.882 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.152 0.848 29 H 0.233 0.767 30 H 0.185 0.815 31 H 0.166 0.834 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.840 -23.680 10.999 29.551 hybrid contribution 0.599 0.854 -0.244 1.071 sum -13.241 -22.826 10.755 28.496 Atomic orbital electron populations 1.22004 0.93688 1.03931 1.02042 1.22040 0.96294 0.76120 1.05407 1.49076 1.35780 1.10741 1.20422 1.23215 0.94447 0.94501 0.96578 1.21719 1.09602 0.98273 1.01506 1.21802 0.98333 0.94077 0.96835 1.19782 1.07797 0.94031 0.85067 1.24052 0.73274 0.82002 0.90125 1.90653 1.45541 1.26757 1.79214 1.86580 1.79801 1.39077 1.21875 1.23176 1.01703 0.97157 0.77794 1.22739 0.92943 0.89371 0.97425 1.87924 1.55963 1.27516 1.61218 1.20377 0.95634 0.81645 0.92128 1.21168 1.17862 1.00292 1.19177 0.95346 1.25887 0.96645 0.96026 1.00152 1.70038 1.33447 1.10748 1.43934 0.85571 0.78766 0.79276 0.78491 1.18309 1.19973 1.16589 1.77258 1.24934 0.97513 1.13758 0.93890 0.88231 0.92325 0.90224 0.84782 0.76698 0.81535 0.83411 0.84078 0.91693 0.87677 0.89231 0.91394 0.96456 0.96644 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 10.10 71.98 0.73 -1.12 16 2 C 0.12 1.44 7.23 86.38 0.62 2.06 16 3 N -0.38 -7.62 3.68 -348.05 -1.28 -8.90 16 4 C 0.06 0.95 11.45 83.54 0.96 1.90 16 5 C -0.28 -5.70 10.72 21.99 0.24 -5.46 16 6 C 0.06 1.41 6.02 43.10 0.26 1.67 16 7 C -0.03 -0.65 6.39 29.10 0.19 -0.47 16 8 C 0.46 14.55 7.95 71.24 0.57 15.12 16 9 O -0.53 -19.77 15.31 21.98 0.34 -19.43 16 10 O -0.36 -12.02 10.19 -48.81 -0.50 -12.52 16 11 C 0.08 2.37 5.84 71.98 0.42 2.79 16 12 C 0.05 1.74 6.33 71.98 0.46 2.19 16 13 O -0.41 -19.17 10.30 -145.57 -1.50 -20.67 16 14 C 0.18 8.89 4.76 71.24 0.34 9.23 16 15 C -0.55 -33.62 9.99 25.60 0.26 -33.36 16 16 H 0.03 1.97 8.06 -2.91 -0.02 1.95 16 17 C 0.01 0.64 5.47 84.66 0.46 1.10 16 18 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 19 Si 0.96 43.09 27.47 68.60 1.88 44.97 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 23 N -0.31 -8.76 11.77 -47.39 -0.56 -9.32 16 24 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.13 0.51 8.07 -2.39 -0.02 0.49 16 29 H 0.22 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.15 2.77 8.12 -2.38 -0.02 2.75 16 32 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 34 H 0.11 2.72 8.13 -2.39 -0.02 2.70 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 38 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 39 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -84.75 342.37 5.15 -79.60 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.97 Total: 9.87 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.49 Total: -4.34 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -1.54 Total: -77.47 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -1.66 Total: -52.62 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -84.75 5.15 -79.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845293596.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.957 kcal (2) G-P(sol) polarization free energy of solvation -84.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds