Wall clock time and date at job start Tue Mar 31 2020 02:13:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 120.00005 * 2 1
4 4 H 1.48503 * 109.46756 * 239.99477 * 3 2 1
5 5 H 1.48490 * 109.47381 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47117 * 120.00084 * 3 2 1
7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2
11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 7
12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9
13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9
14 14 C 1.47015 * 125.64739 * 359.69531 * 13 11 10
15 15 C 1.54339 * 107.26094 * 178.84648 * 14 13 11
16 16 C 1.55153 * 103.02416 * 338.14031 * 15 14 13
17 17 H 1.09003 * 111.00607 * 277.23600 * 16 15 14
18 18 N 1.46499 * 111.03634 * 153.39731 * 16 15 14
19 19 C 1.47093 * 125.55702 * 127.50988 * 18 16 15
20 20 C 1.54099 * 103.77334 * 179.86691 * 19 18 16
21 21 O 1.45709 * 104.00662 * 0.37383 * 20 19 18
22 22 C 1.33767 * 109.47560 * 359.75171 * 21 20 19
23 23 O 1.21514 * 123.07306 * 179.97438 * 22 21 20
24 24 C 1.47427 * 125.64341 * 180.02562 * 13 11 10
25 25 H 0.97002 * 119.99731 * 0.02562 * 1 2 3
26 26 H 1.09002 * 109.47120 * 59.99671 * 9 7 2
27 27 H 1.08998 * 109.46862 * 300.00473 * 9 7 2
28 28 H 1.09002 * 109.47153 * 59.99773 * 10 9 7
29 29 H 1.09001 * 109.46832 * 299.99964 * 10 9 7
30 30 H 1.08994 * 109.88560 * 298.38860 * 14 13 11
31 31 H 1.08996 * 109.88501 * 59.56171 * 14 13 11
32 32 H 1.09005 * 110.84877 * 219.67465 * 15 14 13
33 33 H 1.08997 * 110.51374 * 96.45720 * 15 14 13
34 34 H 1.09001 * 110.56130 * 298.56355 * 19 18 16
35 35 H 1.08997 * 110.56781 * 61.42318 * 19 18 16
36 36 H 1.08991 * 110.72749 * 241.64004 * 20 19 18
37 37 H 1.08997 * 110.43046 * 118.95426 * 20 19 18
38 38 H 1.09000 * 110.36996 * 322.93056 * 24 13 11
39 39 H 1.08998 * 110.36260 * 85.14936 * 24 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2843 2.7464 -0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 6 1.4916 -4.9672 0.0012
12 8 0.2788 -4.9671 0.0011
13 7 2.1655 -6.1344 0.0008
14 6 3.6285 -6.2791 -0.0066
15 6 3.9393 -7.7906 0.0255
16 6 2.6397 -8.4025 0.6119
17 1 2.6361 -8.3425 1.7003
18 7 2.4615 -9.7860 0.1645
19 6 2.2231 -10.9440 1.0396
20 6 2.1097 -12.1275 0.0592
21 8 2.3032 -11.5200 -1.2509
22 6 2.4945 -10.2038 -1.1084
23 8 2.6817 -9.4554 -2.0472
24 6 1.5574 -7.4775 0.0008
25 1 -0.4850 0.8401 -0.0004
26 1 0.6246 -2.5571 -0.8897
27 1 0.6240 -2.5566 0.8902
28 1 2.8718 -3.6044 0.8905
29 1 2.8718 -3.6044 -0.8895
30 1 4.0405 -5.8331 -0.9118
31 1 4.0532 -5.7965 0.8735
32 1 4.7902 -7.9979 0.6745
33 1 4.1213 -8.1646 -0.9820
34 1 3.0615 -11.0878 1.7211
35 1 1.2937 -10.8192 1.5952
36 1 1.1246 -12.5895 0.1245
37 1 2.8894 -12.8626 0.2584
38 1 0.6584 -7.4870 0.6170
39 1 1.3220 -7.7872 -1.0174
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000855501579.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 02:13:56
Heat of formation + Delta-G solvation = -128.824003 kcal
Electronic energy + Delta-G solvation = -22151.488883 eV
Core-core repulsion = 18672.402351 eV
Total energy + Delta-G solvation = -3479.086532 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 282.141 amu
Computer time = 1.39 seconds
Orbital eigenvalues (eV)
-42.66527 -41.02599 -38.93205 -38.12645 -36.03024 -35.59331 -33.19388 -32.11535
-30.57267 -29.60395 -27.69707 -25.26590 -24.54557 -23.54680 -23.10572 -21.26174
-20.17364 -18.89673 -18.52826 -18.16878 -17.78675 -17.44278 -17.14514 -16.49484
-16.41407 -15.92908 -15.38233 -15.15608 -14.81546 -14.55792 -14.50016 -14.30624
-14.14593 -13.92282 -13.62588 -13.22030 -13.17482 -12.78243 -12.69159 -12.55464
-12.50372 -12.34560 -11.93458 -11.64663 -11.61634 -11.34824 -11.33153 -10.83554
-10.56327 -10.02020 -9.68157 -8.18085 -6.32695 1.24769 1.42172 1.47244
1.54923 1.57767 1.61478 2.02940 2.43457 2.61944 3.14670 3.32150
3.37299 3.41768 3.74617 3.92239 4.05261 4.10041 4.17848 4.26290
4.45269 4.49215 4.52812 4.55739 4.65240 4.73470 4.80695 4.88278
4.92775 5.02829 5.12074 5.23220 5.45409 5.49608 5.60406 5.83706
6.16220 6.32854 6.41450 6.85156 6.90438 7.16825 7.37582 8.94682
Molecular weight = 282.14amu
Principal moments of inertia in cm(-1)
A = 0.046954 B = 0.002978 C = 0.002929
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 596.190466 B = 9398.872168 C = 9555.844988
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.939 5.939
2 C -0.008 4.008
3 Si 0.976 3.024
4 H -0.264 1.264
5 H -0.288 1.288
6 H -0.259 1.259
7 C -0.544 4.544
8 H 0.077 0.923
9 C 0.043 3.957
10 C -0.109 4.109
11 C 0.524 3.476
12 O -0.591 6.591
13 N -0.620 5.620
14 C 0.098 3.902
15 C -0.137 4.137
16 C 0.177 3.823
17 H 0.155 0.845
18 N -0.618 5.618
19 C 0.063 3.937
20 C 0.034 3.966
21 O -0.352 6.352
22 C 0.635 3.365
23 O -0.568 6.568
24 C 0.088 3.912
25 H 0.263 0.737
26 H -0.023 1.023
27 H -0.015 1.015
28 H 0.110 0.890
29 H 0.098 0.902
30 H 0.071 0.929
31 H 0.103 0.897
32 H 0.128 0.872
33 H 0.071 0.929
34 H 0.129 0.871
35 H 0.112 0.888
36 H 0.126 0.874
37 H 0.136 0.864
38 H 0.071 0.929
39 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.973 -27.840 7.740 31.278
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.579 5.579
2 C -0.205 4.205
3 Si 0.800 3.200
4 H -0.188 1.188
5 H -0.213 1.213
6 H -0.183 1.183
7 C -0.581 4.581
8 H 0.096 0.904
9 C 0.005 3.995
10 C -0.149 4.149
11 C 0.316 3.684
12 O -0.471 6.471
13 N -0.354 5.354
14 C -0.024 4.024
15 C -0.175 4.175
16 C 0.075 3.925
17 H 0.172 0.828
18 N -0.365 5.365
19 C -0.058 4.058
20 C -0.039 4.039
21 O -0.262 6.262
22 C 0.390 3.610
23 O -0.456 6.456
24 C -0.036 4.036
25 H 0.072 0.928
26 H -0.004 1.004
27 H 0.004 0.996
28 H 0.128 0.872
29 H 0.116 0.884
30 H 0.089 0.911
31 H 0.121 0.879
32 H 0.146 0.854
33 H 0.089 0.911
34 H 0.147 0.853
35 H 0.130 0.870
36 H 0.144 0.856
37 H 0.153 0.847
38 H 0.089 0.911
39 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 11.243 -27.451 7.073 30.496
hybrid contribution -0.548 0.964 -0.465 1.202
sum 10.696 -26.487 6.608 29.320
Atomic orbital electron populations
1.70185 1.08395 1.27922 1.51374 1.26176 0.95742 1.04061 0.94549
0.85336 0.78021 0.77117 0.79545 1.18833 1.21337 1.18343 1.21669
0.94038 0.91453 1.50990 0.90439 1.18693 0.93674 0.92477 0.94638
1.21597 0.99199 0.89397 1.04702 1.21179 0.87361 0.85631 0.74275
1.90649 1.16626 1.87825 1.51979 1.48463 1.08916 1.04534 1.73528
1.22303 0.78510 0.97740 1.03880 1.23069 0.98208 0.92681 1.03548
1.22043 0.93560 0.76074 1.00848 0.82762 1.47995 1.73671 1.08983
1.05841 1.23272 1.06534 0.82114 0.93901 1.24808 1.07355 0.95940
0.75828 1.87268 1.84838 1.19571 1.34519 1.18780 0.76269 0.81662
0.84277 1.91027 1.55897 1.54789 1.43926 1.22516 0.97745 0.82624
1.00696 0.92824 1.00422 0.99646 0.87160 0.88408 0.91060 0.87919
0.85401 0.91075 0.85336 0.86955 0.85636 0.84654 0.91092 0.93674
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -60.71 13.29 21.45 0.28 -60.43 16
2 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16
3 Si 0.98 44.85 29.54 68.60 2.03 46.87 16
4 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16
5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16
6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16
7 C -0.54 -31.59 9.11 25.60 0.23 -31.35 16
8 H 0.08 4.06 7.74 -2.91 -0.02 4.04 16
9 C 0.04 2.47 4.26 29.85 0.13 2.60 16
10 C -0.11 -4.66 4.83 29.85 0.14 -4.51 16
11 C 0.52 22.35 7.85 87.66 0.69 23.04 16
12 O -0.59 -31.40 16.24 -3.03 -0.05 -31.45 16
13 N -0.62 -19.56 3.33 -811.73 -2.70 -22.26 16
14 C 0.10 2.08 6.49 86.74 0.56 2.64 16
15 C -0.14 -2.23 6.43 31.79 0.20 -2.02 16
16 C 0.18 2.87 3.78 46.39 0.18 3.05 16
17 H 0.15 1.36 8.13 -2.39 -0.02 1.34 16
18 N -0.62 -9.21 2.99 -919.56 -2.75 -11.96 16
19 C 0.06 0.22 7.69 86.64 0.67 0.88 16
20 C 0.03 0.15 8.23 72.35 0.60 0.74 16
21 O -0.35 -6.63 11.09 -47.28 -0.52 -7.15 16
22 C 0.64 15.02 8.16 129.91 1.06 16.08 16
23 O -0.57 -19.33 14.78 19.64 0.29 -19.04 16
24 C 0.09 2.48 6.45 86.86 0.56 3.04 16
25 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16
26 H -0.02 -1.49 8.10 -2.39 -0.02 -1.51 16
27 H -0.01 -0.96 8.10 -2.39 -0.02 -0.98 16
28 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16
29 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16
30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16
31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16
32 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16
33 H 0.07 1.61 6.12 -2.39 -0.01 1.59 16
34 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16
35 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16
36 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16
37 H 0.14 -0.21 8.14 -2.39 -0.02 -0.23 16
38 H 0.07 2.08 8.04 -2.39 -0.02 2.06 16
39 H 0.04 1.56 6.71 -2.39 -0.02 1.55 16
Total: -1.00 -93.19 325.85 3.10 -90.09
By element:
Atomic # 1 Polarization: 0.10 SS G_CDS: 1.04 Total: 1.15 kcal
Atomic # 6 Polarization: 8.69 SS G_CDS: 5.48 Total: 14.17 kcal
Atomic # 7 Polarization: -89.48 SS G_CDS: -5.17 Total: -94.64 kcal
Atomic # 8 Polarization: -57.37 SS G_CDS: -0.28 Total: -57.65 kcal
Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal
Total: -93.19 3.10 -90.09 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000855501579.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.729 kcal
(2) G-P(sol) polarization free energy of solvation -93.195 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.924 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.095 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.39 seconds